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18 pages, 2447 KiB  
Article
Effects of Acorns on Fatty Acid Composition and Lipid Metabolism in Adipose Tissue of Yuxi Black Pigs
by Zhe Sun, Dongyang Liu, Siyuan An, Xuejia Wu, Jinzhou Zhang and Zhiguo Miao
Animals 2024, 14(22), 3271; https://doi.org/10.3390/ani14223271 - 13 Nov 2024
Viewed by 296
Abstract
The objective of the present research was the examination of how varying proportions of an acorn diet affects the deposition of subcutaneous fat and the composition of fatty acids (FAs) in Yuxi black pigs. Ninety pigs (with a balanced sex ratio and a [...] Read more.
The objective of the present research was the examination of how varying proportions of an acorn diet affects the deposition of subcutaneous fat and the composition of fatty acids (FAs) in Yuxi black pigs. Ninety pigs (with a balanced sex ratio and a similar weight 99.60 ± 2.32 kg) were stochastically assigned to the control group (CON) and the dietary acorn experimental groups (AEG). The CON was fed basal diets and the AEG1, AEG2, AEG3, and AEG4 groups were provided with dietary regimens comprising twenty, thirty, forty, and fifty per cent acorns, respectively. Each group consisted of six pigs, with three replicates. The breeding cycle was four months. The results demonstrated that, in comparison with the CON group, the lean meat rate was significantly increased in all test groups (p < 0.05), while in backfat thickness, loin eye area, carcass weight and slaughter rate was no significant difference (p > 0.05). The serum TC/HDL (total cholesterol divided by high-density lipoprotein-cholesterol) and TG/HDL (Triglyceride divided by high-density lipoprotein-cholesterol) levels in the AEG1 and AEG2 groups were significantly lower than the CON group (p < 0.05). There was no significant effect on the composition of FAs (p > 0.05). The number of fat cells in subcutaneous back fat and subcutaneous abdominal fat was significantly increased, and the area of fat cells was decreased (p < 0.05). Furthermore, the levels of ATGL and HSL expression in the subcutaneous back fat, as well as ACC, FAS, ATGL, PPARγ, and HSL expression in the subcutaneous abdominal fat, were significantly increased in the AEG2 group compared to the CON group (p < 0.05). Additionally, the expression of ACC, FAS, FABP4, PPARγ, C/EBPα, and FAS/HSL in the subcutaneous back fat, as well as FABP4, C/EBPα, and FAS/HSL in the subcutaneous abdominal fat, were significantly lower in the AEG2 group compared to the CON group (p < 0.05). In conclusion, it has been found that a 30% acorn diet can inhibit subcutaneous fat deposition and enhance the nutritional value of pork and the health of Yuxi black pigs. Full article
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20 pages, 1439 KiB  
Article
Development of a Novel Gluten-Free Cookie Premix Enriched with Natural Flours Using an Extreme Vertices Design: Physical, Sensory, Rheological, and Antioxidant Characteristics
by Sabrina Ferradji, Hayat Bourekoua, Fairouz Djeghim, Radia Ayad, Marta Krajewska and Renata Różyło
Appl. Sci. 2024, 14(22), 10391; https://doi.org/10.3390/app142210391 - 12 Nov 2024
Viewed by 365
Abstract
This work aimed to develop novel alternative gluten-free premixes for use in the production of cookies by optimizing the formulation of three different starches (corn, potato, and tapioca starch) in a rice/corn formula and then enriching the optimized formula with various natural flours [...] Read more.
This work aimed to develop novel alternative gluten-free premixes for use in the production of cookies by optimizing the formulation of three different starches (corn, potato, and tapioca starch) in a rice/corn formula and then enriching the optimized formula with various natural flours (acorn, soy, chestnut, chickpea, millet, and quinoa). An extreme vertices mixture design was used to optimize the mixing sub-part consisting of 30% (w/w) of starches. The enriched gluten-free cookies were characterized by physical, rheological, antioxidant, color, and sensory properties. An optimum was obtained by mixing 18.5084 g of corn starch, 6 g of potato starch, and 5.4916 g of tapioca starch. The enrichment results indicated that soy-enriched gluten-free cookies have a high specific volume (2.428 cm3/g) with the highest spread ratio (12.25) compared to other cookies. The rheological properties of enriched gluten-free doughs indicated a higher value of the consistency coefficient (K) of soy-enriched gluten-free cookies. The antioxidant characteristics were enhanced by replacing corn with several types of flours, with higher TPC for acorn (2.83 mg GAE/g dw) and soy-enriched cookies (2.49 mg GAE/g dw) with better antioxidant activities (DPPH, ABTS, and RED). The tasters gave all the cookies favorable ratings for overall acceptability. With an average rating of 7.09, cookies enhanced with chickpea flour have a high acceptability compared to the other cookies. Considering all the tested parameters, PCA analysis clustered millet, corn, quinoa, and chestnut gluten-free enriched cookies into the same group. However, acorn and soy cookies were placed in a separate group, and chickpea-enriched cookies were classified separately. Full article
(This article belongs to the Special Issue Bio-Based Products and Co-products Applications)
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14 pages, 376 KiB  
Review
Acorns: From an Ancient Food to a Modern Sustainable Resource
by Leonardo G. Inácio, Raul Bernardino, Susana Bernardino and Clélia Afonso
Sustainability 2024, 16(22), 9613; https://doi.org/10.3390/su16229613 - 5 Nov 2024
Viewed by 592
Abstract
Acorns, the seeds of oak trees, are pivotal in the Mediterranean region, historically serving as vital sustenance for wildlife and humans. Although traditionally used for livestock, in times of scarcity, acorns were also used in human diets together with their use in traditional [...] Read more.
Acorns, the seeds of oak trees, are pivotal in the Mediterranean region, historically serving as vital sustenance for wildlife and humans. Although traditionally used for livestock, in times of scarcity, acorns were also used in human diets together with their use in traditional medicine. In this review, we explore and deepen the multifaceted significance of oak species, consolidating nutritional data while emphasizing sustainable practices for modern dietary integration and potential applications in other areas, promoting long-term ecological balance. In the Mediterranean region, notable species are Quercus ilex, Q. faginea, Q. suber, and Q. coccifera, which differ in flavor, texture, and nutritional content. Rich in carbohydrates, acorns can contain up to 50% starch as well as amino acids, proteins, and lipids. This nutritional composition favors the preparation of flour for use in bread doughs or even diverse types of processing such as roasting, which makes it a substitute for coffee. Furthermore, acorn by-products, containing tannins, find applications in leather processing. This review highlights and summarizes in detail the nutritional potential, culinary adaptability, and diverse applications of acorns, emphasizing the need to preserve and utilize natural resources sustainably. In doing so, it sheds light on the often-overlooked value of these humble seeds. Full article
18 pages, 1192 KiB  
Article
Effects of Acorns on Meat Quality and Lipid Metabolism-Related Gene Expression in Muscle Tissues of Yuxi Black Pigs
by Zhe Sun, Yadi Chang, Luyao Huang, Siyuan An, Dongyang Liu, Jinzhou Zhang and Zhiguo Miao
Metabolites 2024, 14(11), 578; https://doi.org/10.3390/metabo14110578 - 26 Oct 2024
Viewed by 510
Abstract
Objectives: The aim of this study was to investigate the effects of acorn diets on the composition of fatty acid (FA) and the intramuscular fat (IMF) content in Yuxi black pigs. Methods: Ninety Yuxi black pigs with similar body weight (99.60 ± 2.32 [...] Read more.
Objectives: The aim of this study was to investigate the effects of acorn diets on the composition of fatty acid (FA) and the intramuscular fat (IMF) content in Yuxi black pigs. Methods: Ninety Yuxi black pigs with similar body weight (99.60 ± 2.32 kg) were randomly divided into five groups. The control group was fed a basal diet, and the AD20, AD30, AD40, and AD50 groups were fed experimental diets which contained 20%, 30%, 40%, and 50% acorns, respectively. The feeding experiment lasted for 120 days. Results: The results showed that compared with the control group, the content of SFA in longissimus dorsi and biceps femoris tissues in the AD30 group decreased by 8.57% and 20.10%, and the content of MUFA increased by 5.40% and 15.83%, respectively, while the PUFA content of biceps femoris increased by 5.40% (p < 0.05). Meanwhile, the IMF content of the AD30 group was significantly higher than that of the control group in the longissimus dorsi and biceps femoris. In addition, the mRNA expression levels of the ATGL, PPARγ, and FABP4 genes in longissimus dorsi (p < 0.05) were up-regulated, and HSL were down-regulated (p < 0.05) in the AD30 group. In the biceps femoris of the AD30 group, it was observed that the expression levels of the ACC and FAS genes were up-regulated (p < 0.05), while HSL and ATGL genes were down-regulated (p < 0.05). Conclusions: These results demonstrated that the addition of appropriate amounts of acorn to the diet (a 30% acorn diet) could improve the nutritional value of pork. Full article
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18 pages, 2803 KiB  
Article
Photosynthetic Traits of Quercus coccifera Green Fruits: A Comparison with Corresponding Leaves during Mediterranean Summer
by Dimitrios Kalachanis, Christos Chondrogiannis and Yiola Petropoulou
Plants 2024, 13(20), 2867; https://doi.org/10.3390/plants13202867 - 14 Oct 2024
Viewed by 594
Abstract
Fruit photosynthesis occurs in an internal microenvironment seldom encountered by a leaf (hypoxic and extremely CO2-enriched) due to its metabolic and anatomical features. In this study, the anatomical and photosynthetic traits of fully exposed green fruits of Quercus coccifera L. were [...] Read more.
Fruit photosynthesis occurs in an internal microenvironment seldom encountered by a leaf (hypoxic and extremely CO2-enriched) due to its metabolic and anatomical features. In this study, the anatomical and photosynthetic traits of fully exposed green fruits of Quercus coccifera L. were assessed during the period of fruit production (summer) and compared to their leaf counterparts. Our results indicate that leaf photosynthesis, transpiration and stomatal conductance drastically reduced during the summer drought, while they recovered significantly after the autumnal rainfalls. In acorns, gas exchange with the surrounding atmosphere is hindered by the complete absence of stomata; hence, credible CO2 uptake measurements could not be applied in the field. The linear electron transport rates (ETRs) in ambient air were similar in intact leaves and pericarps (i.e., when the physiological internal atmosphere of each tissue is maintained), while the leaf NPQ was significantly higher, indicating enhanced needs for harmless energy dissipation. The ETR measurements performed on leaf and pericarp discs at different CO2/O2 partial pressures in the supplied air mixture revealed that pericarps displayed significantly lower values at ambient gas levels, yet they increased by ~45% under high CO2/O2 ratios (i.e., at gas concentrations simulating the fruit’s interior). Concomitantly, NPQ declined gradually in both tissues as the CO2/O2 ratio increased, yet the decrease was more pronounced in pericarps. Furthermore, net CO2 assimilation rates for both leaf and pericarp segments were low in ambient air and increased almost equally at high CO2, while pericarps exhibited significantly higher respiration. It is suggested that during summer, when leaves suffer from photoinhibition, acorns could contribute to the overall carbon balance, through the re-assimilation of respiratory CO2, thereby reducing the reproductive cost. Full article
(This article belongs to the Section Plant Physiology and Metabolism)
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14 pages, 9639 KiB  
Article
Extraction Condition Optimization, Quantitative Analysis, and Anti-AD Bioactivity Evaluation of Acorn Polyphenols from Quercus variabilis, Quercus aliena, and Quercus dentata
by Jianing Du, Zhengkun Han, Longyi Ran, Taiyu Zhang, Junru Li and Huiying Li
Int. J. Mol. Sci. 2024, 25(19), 10536; https://doi.org/10.3390/ijms251910536 - 30 Sep 2024
Viewed by 526
Abstract
In the present study, Quercus variabilis (Q. variabilis), Quercus aliena (Q. aliena), and Quercus dentata (Q. dentata) acorn kernels were taken as the research objects, and the free polyphenols and bound polyphenols in acorn kernels were extracted using improved ultrasound-assisted ethanolic and alkaline [...] Read more.
In the present study, Quercus variabilis (Q. variabilis), Quercus aliena (Q. aliena), and Quercus dentata (Q. dentata) acorn kernels were taken as the research objects, and the free polyphenols and bound polyphenols in acorn kernels were extracted using improved ultrasound-assisted ethanolic and alkaline extraction methods, after which the contents of gallic acid, quercetin, azelaic acid, ellagic acid, and ferulic acid were quantified by LC-MC/MS. The results demonstrated that Q. variabilis and Q. aliena acorns were suitable as raw materials to extract ellagic acid, the contents of ferulic acid and bound gallic acid in them were different, and Q. aliena acorns were more suitable for the research of gallic acid, but not for azelaic acid. Results on APP/PS1 transgenic mice verified that five polyphenols significantly suppressed the progression of AD. This study provides a theoretical basis for the drug development of acorn polyphenols. Full article
(This article belongs to the Section Bioactives and Nutraceuticals)
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17 pages, 3247 KiB  
Article
Quercus glauca Acorn Seed Coat Extract Promotes Wound Re-Epithelialization by Facilitating Fibroblast Migration and Inhibiting Dermal Inflammation
by Shin-Hye Kim, Hye-Lim Shin, Tae Hyun Son, So-An Lim, Dongsoo Kim, Jun-Hyuck Yoon, Hyunmo Choi, Hwan-Gyu Kim and Sik-Won Choi
Biology 2024, 13(10), 775; https://doi.org/10.3390/biology13100775 - 28 Sep 2024
Viewed by 630
Abstract
The skin, recognized as the largest organ in the human body, serves a vital function in safeguarding against external threats. Severe damage to the skin can pose significant risks to human health. There is an urgent requirement for safe and effective therapies for [...] Read more.
The skin, recognized as the largest organ in the human body, serves a vital function in safeguarding against external threats. Severe damage to the skin can pose significant risks to human health. There is an urgent requirement for safe and effective therapies for wound healing. While phytotherapy has been widely utilized for various health conditions, the potential of Quercus glauca in promoting wound healing has not been thoroughly explored. Q. glauca is a cultivated crop known for its abundance of bioactive compounds. This study examined the wound-healing properties of Quercus glauca acorn seed coat water extract (QGASE). The findings from the study suggest that QGASE promotes wound closure in HF cells by upregulating essential markers related to the wound-healing process. Additionally, QGASE demonstrates antioxidant effects, mitigating oxidative stress and aiding in recovery from injuries induced by H2O2. In vivo experiments provide additional substantiation supporting the efficacy of QGASE in enhancing wound healing. The collective results indicate that QGASE may be a promising candidate for the development of innovative therapeutic strategies aimed at enhancing skin wound repair. Full article
(This article belongs to the Special Issue Plant Natural Products: Mechanisms of Action for Promoting Health)
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8 pages, 1201 KiB  
Article
Slit in a Nest Site Influences the Nest Site Selection in Cavity Nesting Ant Colonies
by Anna Gruszka, Mateusz Rolski, Mariia Marczak and Sławomir Mitrus
Insects 2024, 15(9), 638; https://doi.org/10.3390/insects15090638 - 26 Aug 2024
Viewed by 754
Abstract
For ants, nests provide a refuge against predators and protection from environmental factors. Thus, choosing a good nest site is important for an ant colony, but nest sites are limited resources. Ants of the genus Temnothorax inhabit small cavities in, e.g., acorns, twigs [...] Read more.
For ants, nests provide a refuge against predators and protection from environmental factors. Thus, choosing a good nest site is important for an ant colony, but nest sites are limited resources. Ants of the genus Temnothorax inhabit small cavities in, e.g., acorns, twigs and under rocks. Earlier, it was shown that the ants are able to choose a superior site. In this study, using binary choice tests, we studied the nest site selection by Temnothorax crassispinus ant colonies that typically inhabit empty acorns. For this purpose, we used artificial nest sites without and with an additional slit in the nest wall, mimicking the cracks in potential nest sites under natural conditions. We found that the ant colonies preferred artificial nest sites without these slits. However, no difference in the number of colonies inhabited nest sites with a slit vs. those without a slit was found when the slits were closed using transparent food foil, which prevented the air flow while keeping an inflow of light. What is more, additional light through the hole in the red filter covering the artificial nest sites had no influence on the nest site selection. The results of this study suggest that the air flow through a slit in the nest site wall, rather than additional light, influences the nest site selection. The absence of cracks, e.g., in acorns, could be an indication of the durability of potential nest sites. Thus, choosing a cavity without such damage could be beneficial for the ant colonies. Full article
(This article belongs to the Section Insect Ecology, Diversity and Conservation)
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19 pages, 6169 KiB  
Article
The Antioxidant and Anti-Inflammatory Properties of Bee Pollen from Acorn (Quercus acutissima Carr.) and Darae (Actinidia arguta)
by Jeong-Eun Kwak, Joo-Yeon Lee, Ji-Yoon Baek, Sun Wook Kim and Mok-Ryeon Ahn
Antioxidants 2024, 13(8), 981; https://doi.org/10.3390/antiox13080981 - 13 Aug 2024
Viewed by 1045
Abstract
Aging is a complex biological process characterized by a progressive decline in physical function and an increased risk of age-related chronic diseases. Additionally, oxidative stress is known to cause severe tissue damage and inflammation. Pollens from acorn and darae are extensively produced in [...] Read more.
Aging is a complex biological process characterized by a progressive decline in physical function and an increased risk of age-related chronic diseases. Additionally, oxidative stress is known to cause severe tissue damage and inflammation. Pollens from acorn and darae are extensively produced in Korea. However, the underlying molecular mechanisms of these components under the conditions of inflammation and oxidative stress remain largely unknown. This study aimed to investigate the effect of bee pollen components on lipopolysaccharide (LPS)-induced RAW 264.7 mouse macrophages. This study demonstrates that acorn and darae significantly inhibit the LPS-induced production of inflammatory mediators, such as nitric oxide (NO) and prostaglandin E2 (PGE2), in RAW 264.7 cells. Specifically, bee pollen from acorn reduces NO production by 69.23 ± 0.04% and PGE2 production by 44.16 ± 0.08%, while bee pollen from darae decreases NO production by 78.21 ± 0.06% and PGE2 production by 66.23 ± 0.1%. Furthermore, bee pollen from acorn and darae reduced active oxygen species (ROS) production by 47.01 ± 0.5% and 60 ± 0.9%, respectively. It increased the nuclear potential of nuclear factor erythroid 2-related factor 2 (Nrf2) in LPS-stimulated RAW 264.7 cells. Moreover, treatment with acorn and darae abolished the nuclear potential of nuclear factor κB (NF-κB) and reduced the expression of extracellular signal-associated kinase (ERK) and c-Jun N-terminal kinase (JNK) phosphorylation in LPS-stimulated RAW 264.7 cells. Specifically, acorn decreased NF-κB nuclear potential by 90.01 ± 0.3%, ERK phosphorylation by 76.19 ± 1.1%, and JNK phosphorylation by 57.14 ± 1.2%. Similarly, darae reduced NF-κB nuclear potential by 92.21 ± 0.5%, ERK phosphorylation by 61.11 ± 0.8%, and JNK phosphorylation by 59.72 ± 1.12%. These results suggest that acorn and darae could be potential antioxidants and anti-inflammatory agents. Full article
(This article belongs to the Special Issue Bee Products as a Source of Natural Antioxidants: Second Edition)
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14 pages, 3282 KiB  
Article
Comparative Assessment of Shell Structural, Mechanical, and Elemental Properties in Adult Acorn Barnacles
by Jazmine Shaw, Yeram Kang, Callie Triano, Corin J. Hoppe, Nick Aldred, Rebecca A. Metzler and Gary H. Dickinson
Diversity 2024, 16(8), 482; https://doi.org/10.3390/d16080482 - 8 Aug 2024
Viewed by 860
Abstract
Balanomorph (acorn) barnacles are found throughout the world’s coastal oceans, and their success is dependent on a hard, mineralized, outer shell. Although macro-scale morphology of barnacle shells has been studied extensively, relatively little is known about shell properties at the micron-scale and if [...] Read more.
Balanomorph (acorn) barnacles are found throughout the world’s coastal oceans, and their success is dependent on a hard, mineralized, outer shell. Although macro-scale morphology of barnacle shells has been studied extensively, relatively little is known about shell properties at the micron-scale and if such properties vary among species. We assessed shell structure, mechanics, and composition in seven species of balanomorph barnacles from five genera. Three species, Amphibalanus amphitrite, Amphibalanus improvisus, and Austrominius modestus, were laboratory-reared, enabling direct comparison of shell properties of barnacles grown under the same conditions for the same duration. Four other species, Semibalanus balanoides, Amphibalanus eburneus, Chthamalus stellatus, and Tetraclita rubescens, were field-collected. At the macro- and meso-scales, shell properties varied markedly among species, with differences in the number of shell plates, the presence of canals within the plates, mineralization of the base, and shell plate thickness. At the micron-scale, however, structure was remarkably similar among species. Plates of all species were constructed of irregular micron-scale crystallites, with a broad range of crystallite dimensions observed within the same shell. Similarly, micromechanical properties did not vary among species, regardless of testing orientation. Calcium carbonate was identified as calcite in all species assessed with no other mineral phases present, and calcium content did not vary among species. Hence, despite variation in the overall macro- and meso-scale morphology of barnacles, all appear to be built using the same, evolutionarily conserved, mineralization pathway. Full article
(This article belongs to the Special Issue Diversity in 2024)
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21 pages, 2080 KiB  
Article
Physicochemical, Functional, Antioxidant, Pasting and FT-IR Spectroscopic Properties of Fermented Acorns and Sorghum Using Traditional Algerian Processes
by Rayene Belmouloud, Hayat Bourekoua, Agnieszka Wójtowicz, Hamida Mahroug, Radia Ayad, Marta Krajewska and Renata Różyło
Processes 2024, 12(8), 1647; https://doi.org/10.3390/pr12081647 - 5 Aug 2024
Viewed by 1117
Abstract
The fermentation of acorns and sorghum is an ancient practice among the inhabitants of northeastern Algeria. This study aimed to establish the traditional fermentation processes of acorns and sorghum through a regional survey conducted in Algeria. Additionally, it investigated the impact of fermentation [...] Read more.
The fermentation of acorns and sorghum is an ancient practice among the inhabitants of northeastern Algeria. This study aimed to establish the traditional fermentation processes of acorns and sorghum through a regional survey conducted in Algeria. Additionally, it investigated the impact of fermentation on the physicochemical, functional, antioxidant, and pasting properties, as well as the FT-IR spectroscopic profiles of the flours derived from these fermented materials. Characteristics of fermented sorghum and acorn flours were compared with those of non-fermented flours. The study included a survey that was carried out in Algeria at the regional level to establish the traditional processes for fermented acorns and sorghum. The key findings reveal the existence of two production methods: the first, the oldest, involves fermentation in underground pits called Matmor, while the second, more recent, is conducted outside the Matmor. Most manufacturers employed the new process outside of the Matmor, usually in various sized and shaped containers to meet market demand. Acorns and sorghum flour, obtained by drying and grinding fermented acorns and fermented sorghum grains according to the process carried out outside the Matmor, are characterized by a unique biochemical, functional, and structural composition. Detailed analysis of the flours showed a significant decrease in their physicochemical properties after fermentation, with a simultaneous overall increase in antioxidant activity. Moreover, FT-IR spectroscopy suggests that fermentation differentially affects protein secondary structure and starch crystallinity. Full article
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14 pages, 2771 KiB  
Article
RNA Sequencing Reveals Transcription Factors and Genes in Phenylpropanoid Biosynthesis That Positively Regulate Size and Weight of Oak Tree Seeds
by Siyeon Byeon, Kyungmi Lee, Kyeong-Seong Cheon, Michael Immanuel Jesse Denison, Tae-Lim Kim, Danbe Park and Hyemin Lim
Horticulturae 2024, 10(8), 829; https://doi.org/10.3390/horticulturae10080829 - 5 Aug 2024
Viewed by 839
Abstract
Acorn size is of great importance, both ecologically and economically. However, the long lifespan is an obstacle to improvement in breeding. Keumsura1ho is a recently bred cultivar of oak (Quercus acutissima Carruth) selected after eight years of selection due to its larger [...] Read more.
Acorn size is of great importance, both ecologically and economically. However, the long lifespan is an obstacle to improvement in breeding. Keumsura1ho is a recently bred cultivar of oak (Quercus acutissima Carruth) selected after eight years of selection due to its larger acorns and higher weight compared to the control. In the present study, we investigated the transcriptional mechanisms underlying the outstanding morphological characteristics of Keumsura1ho. For this purpose, one- and two-year-old acorns from the control and Keumsura1ho groups were used for comparative transcriptome analyses of their seeds. Among morphological characteristics, the Keumsura1ho seeds were 18.3% longer than those of the control. Seed width and depth were 33.9% greater than those of the control. In the transcriptome analysis, genes related to seed size were further enriched, with biennial Keumsura1ho showing higher enrichment in comparison to control genes. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis revealed that the upregulated genes of the two-year-old Keumsura1ho seeds showed higher enrichment in phenylpropanoid metabolism compared to the control, with OMT1 and PRXs exhibiting high expression levels. This pathway has a significant impact on seed coat lignification and size in Keumsura1ho. The results of this study will benefit the development of breeding techniques by identifying marker genes for seed size. Full article
(This article belongs to the Section Genetics, Genomics, Breeding, and Biotechnology (G2B2))
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22 pages, 2495 KiB  
Review
Current and Future Insect Threats to Oaks of the Midwest, Great Lakes, and Northeastern United States and Canada
by Amanda J. Stump, Katie Bershing, Tara L. Bal and Carsten Külheim
Forests 2024, 15(8), 1361; https://doi.org/10.3390/f15081361 - 4 Aug 2024
Viewed by 2152
Abstract
Increasing temperatures, prolonged drought, the increased severity and intensity of storms, and other effects of climate change are being felt globally, and long-lived forest tree species may struggle in their current ranges. Oaks (Quercus spp.) have evolved a range of adaptations to [...] Read more.
Increasing temperatures, prolonged drought, the increased severity and intensity of storms, and other effects of climate change are being felt globally, and long-lived forest tree species may struggle in their current ranges. Oaks (Quercus spp.) have evolved a range of adaptations to dry and hot conditions and are believed to be a “climate change winner” by increasing their suitable habitat. However, a mixture of life history traits and increasing susceptibility to herbivores and xylovores as well as secondary pathogen infections still put oaks at risk of decline. Oak species found in the Midwestern, Great Lakes, and Northeastern United States and Canada are important keystone species with high ecological and economical importance. They are also vulnerable to existing, new, and emerging threats that have the potential to cause mortality across entire stands quickly. Current examples of insect threats include the Lymantria dispar (spongy moth), Agrilus bilineatus (twolined chestnut borer), and Nitidulidae (sap beetles) as disease vectors. Examples of emerging insects of concern include Cynipidae (oak gall wasps) and Enaphalodes rufulus (red oak borer). This study describes these insects, explains their mechanisms of action and the effects on oaks, and explores mitigation strategies for each. Full article
(This article belongs to the Special Issue Forest Pathology and Entomology—Series II)
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9 pages, 3256 KiB  
Article
Wood Mice Utilize Understory Vegetation of Leafless Dead Dwarf Bamboo Culms as a Habitat and Foraging Site
by Rui Kajita and Hisashi Kajimura
Diversity 2024, 16(8), 458; https://doi.org/10.3390/d16080458 - 1 Aug 2024
Viewed by 590
Abstract
In this study, we conducted a field survey in Aichi Prefecture, central Japan, to clarify whether rodent activity is affected by the presence or absence of dead culms of the dwarf bamboo Sasa borealis, a species characterized by a 120-year cycle of [...] Read more.
In this study, we conducted a field survey in Aichi Prefecture, central Japan, to clarify whether rodent activity is affected by the presence or absence of dead culms of the dwarf bamboo Sasa borealis, a species characterized by a 120-year cycle of large-scale flowering, seeding, and dying. We found that a relatively larger number of wood mice, Apodemus speciosus and Apodemus argenteus, were caught using Sherman live traps in areas with dead S. borealis culms than in areas lacking the culms, thereby indicating that S. borealis culms, even if dead and leafless, can function as shelters in which the mice can evade predation. However, in the years when A. speciosus was abundant, A. argenteus avoided areas inhabited by A. speciosus and was restricted to areas lacking dead culms, which were devoid of shelter. A feeding experiment using Castanea crenata acorns clearly revealed that a larger number of acorns were foraged by mice in areas containing dead culms. Moreover, in the area with dead culms, the mice preferentially removed sound acorns prior to taking acorns that had been vacated by infesting moth larvae. These findings indicate that the shelter function of dead culms enables mice to carefully select sound acorns, which are nutritionally more beneficial than those that have been infested by moth larvae. Full article
(This article belongs to the Special Issue Wildlife in Natural and Altered Environments)
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17 pages, 3320 KiB  
Article
Genomic Analysis of Aspergillus Section Terrei Reveals a High Potential in Secondary Metabolite Production and Plant Biomass Degradation
by Sebastian Theobald, Tammi C. Vesth, Elena Geib, Jane L. Nybo, Jens C. Frisvad, Thomas O. Larsen, Alan Kuo, Kurt LaButti, Ellen K. Lyhne, Inge Kjærbølling, Line Ledsgaard, Kerrie Barry, Alicia Clum, Cindy Chen, Matt Nolan, Laura Sandor, Anna Lipzen, Stephen Mondo, Jasmyn Pangilinan, Asaf Salamov, Robert Riley, Ad Wiebenga, Astrid Müller, Roland S. Kun, Ana Carolina dos Santos Gomes, Bernard Henrissat, Jon K. Magnuson, Blake A. Simmons, Miia R. Mäkelä, Uffe H. Mortensen, Igor V. Grigoriev, Matthias Brock, Scott E. Baker, Ronald P. de Vries and Mikael R. Andersenadd Show full author list remove Hide full author list
J. Fungi 2024, 10(7), 507; https://doi.org/10.3390/jof10070507 - 22 Jul 2024
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Abstract
Aspergillus terreus has attracted interest due to its application in industrial biotechnology, particularly for the production of itaconic acid and bioactive secondary metabolites. As related species also seem to possess a prosperous secondary metabolism, they are of high interest for genome mining and [...] Read more.
Aspergillus terreus has attracted interest due to its application in industrial biotechnology, particularly for the production of itaconic acid and bioactive secondary metabolites. As related species also seem to possess a prosperous secondary metabolism, they are of high interest for genome mining and exploitation. Here, we present draft genome sequences for six species from Aspergillus section Terrei and one species from Aspergillus section Nidulantes. Whole-genome phylogeny confirmed that section Terrei is monophyletic. Genome analyses identified between 70 and 108 key secondary metabolism genes in each of the genomes of section Terrei, the highest rate found in the genus Aspergillus so far. The respective enzymes fall into 167 distinct families with most of them corresponding to potentially unique compounds or compound families. Moreover, 53% of the families were only found in a single species, which supports the suitability of species from section Terrei for further genome mining. Intriguingly, this analysis, combined with heterologous gene expression and metabolite identification, suggested that species from section Terrei use a strategy for UV protection different to other species from the genus Aspergillus. Section Terrei contains a complete plant polysaccharide degrading potential and an even higher cellulolytic potential than other Aspergilli, possibly facilitating additional applications for these species in biotechnology. Full article
(This article belongs to the Section Fungal Genomics, Genetics and Molecular Biology)
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