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  Analysis of copy number variants and segmental duplications in the human genome: Evidence for a change in the process of formation in recent evolutionary history

  • Philip M. Kim,
  • Hugo Y.K. Lam,
  • Alexander E. Urban,
  • Jan O. Korbel,
  • Jason Affourtit,
  • Fabian Grubert,
  • Xueying Chen,
  • Sherman Weissman,
  • Michael Snyder,
  • and Mark B. Gerstein

  Genome Res. December 2008 18: 1865-1874; Published in Advance October 8, 2008, doi:10.1101/gr.081422.108
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  Active Alu retrotransposons in the human genome

  • E. Andrew Bennett,
  • Heiko Keller,
  • Ryan E. Mills,
  • Steffen Schmidt,
  • John V. Moran,
  • Oliver Weichenrieder,
  • and Scott E. Devine

  Genome Res. December 2008 18: 1875-1883; Published in Advance October 3, 2008, doi:10.1101/gr.081737.108
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  Characterization of the bovine pseudoautosomal boundary: Documenting the evolutionary history of mammalian sex chromosomes

  • Anne-Sophie Van Laere,
  • Wouter Coppieters,
  • and Michel Georges

  Genome Res. December 2008 18: 1884-1895; Published in Advance November 3, 2008, doi:10.1101/gr.082487.108
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  Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif

  • Yong Cheng,
  • David C. King,
  • Louis C. Dore,
  • Xinmin Zhang,
  • Yuepin Zhou,
  • Ying Zhang,
  • Christine Dorman,
  • Demesew Abebe,
  • Swathi A. Kumar,
  • Francesca Chiaromonte,
  • Webb Miller,
  • Roland D. Green,
  • Mitchell J. Weiss,
  • and Ross C. Hardison

  Genome Res. December 2008 18: 1896-1905; Published in Advance September 25, 2008, doi:10.1101/gr.083089.108
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  Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding

  • A. Gordon Robertson,
  • Mikhail Bilenky,
  • Angela Tam,
  • Yongjun Zhao,
  • Thomas Zeng,
  • Nina Thiessen,
  • Timothee Cezard,
  • Anthony P. Fejes,
  • Elizabeth D. Wederell,
  • Rebecca Cullum,
  • Ghia Euskirchen,
  • Martin Krzywinski,
  • Inanc Birol,
  • Michael Snyder,
  • Pamela A. Hoodless,
  • Martin Hirst,
  • Marco A. Marra,
  • and Steven J.M. Jones

  Genome Res. December 2008 18: 1906-1917; Published in Advance September 11, 2008, doi:10.1101/gr.078519.108
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  Pathogen corruption and site-directed recombination at a plant disease resistance gene cluster

  • Ervin D. Nagy and
  • Jeffrey L. Bennetzen

  Genome Res. December 2008 18: 1918-1923; Published in Advance August 21, 2008, doi:10.1101/gr.078766.108
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  Many or most genes in Arabidopsis transposed after the origin of the order Brassicales

  • Michael Freeling,
  • Eric Lyons,
  • Brent Pedersen,
  • Maqsudul Alam,
  • Ray Ming,
  • and Damon Lisch

  Genome Res. December 2008 18: 1924-1937; Published in Advance October 3, 2008, doi:10.1101/gr.081026.108
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  DNA methylation and heterochromatinization in the male-specific region of the primitive Y chromosome of papaya

  • Wenli Zhang,
  • Xiue Wang,
  • Qingyi Yu,
  • Ray Ming,
  • and Jiming Jiang

  Genome Res. December 2008 18: 1938-1943; Published in Advance July 1, 2008, doi:10.1101/gr.078808.108
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