Local supercoil-stabilized DNA structures (Q34922005)

5 August 2017

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title

Local supercoil-stabilized DNA structures (English)

1 reference

5 August 2017

Palecek E

1

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5 August 2017

publication date

1 January 1991

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Critical Reviews in Biochemistry and Molecular Biology

5 August 2017

published in

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5 August 2017

volume

26

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5 August 2017

issue

2

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5 August 2017

page(s)

151-226

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The double helix: a personal view

5 August 2017

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Structural variation in d(CTCTAGAG). Implications for protein-DNA interactions

21 January 2018

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Structure of a B-DNA dodecamer: conformation and dynamics

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A note on crystal packing and global helix structure in short A-DNA duplexes.

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21 January 2018

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21 January 2018

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21 January 2018

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Electrophoretic behavior of d(GGAAAAAAGG)n, d(CCAAAAAACC)n, and (CCAAAAAAGG)n and implications for a DNA bending model

21 January 2018

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The influence of exocyclic substituents of purine bases on DNA curvature

21 January 2018

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DNA curvature in native and modified EcoRI recognition sites and possible influence upon the endonuclease cleavage reaction

21 January 2018

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Effect of the methyl group on DNA bending and curvature: structure of d(GA4U4C)2 in solution

21 January 2018

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21 January 2018

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DNA bending at adenine . thymine tracts

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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A stochastic model for helix bending in B-DNA.

21 January 2018

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21 January 2018

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A bifurcated hydrogen-bonded conformation in the d(A.T) base pairs of the DNA dodecamer d(CGCAAATTTGCG) and its complex with distamycin

21 January 2018

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Crystal lattice packing is important in determining the bend of a DNA dodecamer containing an adenine tract

21 January 2018

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Sequence-directed bent DNA helix is the specific binding site for Crithidia fasciculata nicking enzyme

21 January 2018

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Bent DNA structures associated with several origins of replication are recognized by a unique enzyme from trypanosomatids

21 January 2018

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Influence of the sequence-dependent flexure of DNA on transcription in E. coli

21 January 2018

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Functional replacement of a protein-induced bend in a DNA recombination site

21 January 2018

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Phasing of protein-induced DNA bends in a recombination complex.

21 January 2018

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Specific cleavage of kinetoplast minicircle DNA from Leishmania tarentolae by mung bean nuclease and identification of several additional minicircle sequence classes

21 January 2018

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The twisted circular form of polyoma viral DNA

21 January 2018

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The denaturation and the renaturation of the DNA of polyoma virus

21 January 2018

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Through the looking glass: the discovery of supercoiled DNA.

21 January 2018

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VIRUS-CELL INTERACTION WITH A TUMOR-PRODUCING VIRUS

21 January 2018

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THE CYCLIC HELIX AND CYCLIC COIL FORMS OF POLYOMA VIRAL DNA

21 January 2018

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The Folded Genome of Escherichia coli Isolated in a Protein-DNA-RNA Complex

21 January 2018

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On the structure of the folded chromosome of Escherichia coli

21 January 2018

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Structure and reactions of closed duplex DNA

21 January 2018

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DNA: sequence, structure and supercoiling. The twentieth Colworth medal lecture

21 January 2018

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The writhing number of a space curve

21 January 2018

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Physical and topological properties of circular DNA.

21 January 2018

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Early and late helix-coil transitions in closed circular DNA. The number of superhelical turns in polyoma DNA.

21 January 2018

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Temperature dependence of the gel electrophoretic mobility of superhelical DNA.

21 January 2018

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Calculation of the twist and the writhe for representative models of DNA.

21 January 2018

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Superhelical DNA with local substructures. A generalization of the topological constraint in terms of the intersection number and the ladder-like correspondence surface

21 January 2018

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Molecular mechanics model of supercoiled DNA.

21 January 2018

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Folding of the DNA double helix in chromatin-like structures from simian virus 40

21 January 2018

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21 January 2018

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21 January 2018

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Neutron and light-scattering studies of DNA gyrase and its complex with DNA.

21 January 2018

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X-ray diffraction studies of circular superhelical DNA at 300-10,000-A resolution

21 January 2018

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21 January 2018

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Change of conformation and internal dynamics of supercoiled DNA upon binding of Escherichia coli single-strand binding protein.

21 January 2018

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Deformational dynamics and NMR relaxation of supercoiled DNAs

21 January 2018

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Dynamics of superhelical DNA studied by photon correlation spectroscopy

21 January 2018

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Influence of supercoiling on DNA structure: laser Raman spectroscopy of the plasmid pBR322.

21 January 2018

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Raman spectrum of a closed-circular DNA.

21 January 2018

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Raman spectroscopy of supercoiled and nicked ColE1 plasmid

21 January 2018

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The P22 bacteriophage DNA molecule. II. Circular intracellular forms

21 January 2018

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Structure of plectonemically supercoiled DNA.

21 January 2018

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Unwinding of double-stranded DNA helix by dehydration

21 January 2018

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Separation of yeast chromosome-sized DNAs by pulsed field gradient gel electrophoresis

21 January 2018

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Migration properties of circular DNAs using orthogonal-field-alternation gel electrophoresis

21 January 2018

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Transverse alternating field electrophoresis and applications to mammalian genome mapping

21 January 2018

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Pulsed field electrophoresis in contour-clamped homogeneous electric fields for the resolution of DNA by size or topology

21 January 2018

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Temperature-gradient gel electrophoresis. Thermodynamic analysis of nucleic acids and proteins in purified form and in cellular extracts

21 January 2018

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Temperature-gradient gel electrophoresis of nucleic acids: analysis of conformational transitions, sequence variations, and protein-nucleic acid interactions.

21 January 2018

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Early melting of supercoiled DNA.

21 January 2018

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Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis

21 January 2018

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A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: application to components of the Escherichia coli lactose operon regulatory system

21 January 2018

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21 January 2018

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Hysteretic behaviour of a Z-DNA-antibody complex

21 January 2018

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Studies of DNA-protein interactions by gel electrophoresis

21 January 2018

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Measurement of protein-DNA interaction parameters by electrophoresis mobility shift assay

21 January 2018

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Immunological detection of lesions in DNA.

21 January 2018

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A monoclonal antibody to triplex DNA binds to eucaryotic chromosomes

21 January 2018

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Poly(pyrimidine) . poly(purine) synthetic DNAs containing 5-methylcytosine form stable triplexes at neutral pH

21 January 2018

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Triplex DNA in plasmids and chromosomes

21 January 2018

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Purification and Further Properties of Single-Strand-Specific Nuclease from Aspergillus oryzae

21 January 2018

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Action of single-strand specific nucleases on model DNA heteroduplexes of defined size and sequence

21 January 2018

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Single base mismatches in DNA. Long- and short-range structure probed by analysis of axis trajectory and local chemical reactivity

21 January 2018

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Mung bean nuclease cleavage of a dA + dT-rich sequence or an inverted repeat sequence in supercoiled PM2 DNA depends on ionic environment

21 January 2018

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Changes in site specificity of single-strand-specific endonucleases on supercoiled PM2 DNA with temperature and ionic environment

21 January 2018

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Altered DNA conformations detected by mung bean nuclease occur in promoter and terminator regions of supercoiled pBR322 DNA.

21 January 2018

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Osmium tetroxide: a new probe for site-specific distortions in supercoiled DNAs

21 January 2018

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Immunochemical approaches to DNA structure investigation--I. Immunochemical identification of the product of cytosine modification with bisulphite and O-methylhydroxylamine mixture

21 January 2018

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Immunoassays for carbodiimide modified DNA-detection of unpairing transitions in supercoiled ColE1 DNA.

21 January 2018

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Molecular microscopy of labeled polynucleotides: Stability of osmium atoms

21 January 2018

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Base-specific reactions useful for DNA sequencing: methylene blue – sensitized photooxidation of guanine and osmium tetraoxide modification of thymine

21 January 2018

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Chemical probes of DNA conformation: detection of Z-DNA at nucleotide resolution.

21 January 2018

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Stabilization of Z DNA in vivo by localized supercoiling.

21 January 2018

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A two-state conformational equilibrium for alternating (A-T)n sequences in negatively supercoiled DNA.

21 January 2018

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The contrasting structures of mismatched DNA sequences containing looped-out bases (bulges) and multiple mismatches (bubbles).

21 January 2018

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Chemical reactivity of matched cytosine and thymine bases near mismatched and unmatched bases in a heteroduplex between DNA strands with multiple differences

21 January 2018

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Reactivity of cytosine and thymine in single-base-pair mismatches with hydroxylamine and osmium tetroxide and its application to the study of mutations

21 January 2018

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(A-T)n tracts embedded in random sequence DNA--formation of a structure which is chemically reactive and torsionally deformable

21 January 2018

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Localized chemical hyperreactivity in supercoiled DNA: evidence for base unpairing in sequences that induce low-salt cruciform extrusion.

21 January 2018

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Chemical modification of Escherichia coli RNA polymerase by diethyl pyrocarbonate: evidence of histidine requirement for enzyme activity and intrinsic zinc binding

21 January 2018

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Chemical modification of 3 alpha,20 beta-hydroxysteroid dehydrogenase with diethyl pyrocarbonate. Evidence for an essential, highly reactive, lysyl residue

21 January 2018

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Chemical probes for higher-order structure in RNA

21 January 2018

1 reference

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Nucleotide sequence of the 3′ half of AKV

21 January 2018

1 reference

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Diethyl pyrocarbonate: a chemical probe for secondary structure in negatively supercoiled DNA.

21 January 2018

1 reference

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Diethyl pyrocarbonate: a chemical probe for DNA cruciforms

21 January 2018

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Highly selective chemical modification of cruciform loops by diethyl pyrocarbonate

21 January 2018

1 reference

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Chemical footprinting of the interaction between left-handed Z-DNA and anti-Z-DNA antibodies by diethylpyrocarbonate carbethoxylation

21 January 2018

1 reference

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Fine mapping of DNA single-stranded regions using base-specific chemical probes: study of an open complex formed between RNA polymerase and the lac UV5 promoter.

21 January 2018

1 reference

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The reaction of adenine and cytosine residues in tRNA with chloroacetaldehyde

21 January 2018

1 reference

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Detection of an altered DNA conformation at specific sites in chromatin and supercoiled DNA

21 January 2018

1 reference

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Structural perturbation in supercoiled DNA: hypersensitivity to modification by a single-strand-selective chemical reagent conferred by inverted repeat sequences

21 January 2018

1 reference

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Transition of a cloned d(AT)n-d(AT)n tract to a cruciform in vivo.

21 January 2018

1 reference

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Magnesium ion-dependent triple-helix structure formed by homopurine-homopyrimidine sequences in supercoiled plasmid DNA.

21 January 2018

1 reference

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Distortions induced in double-stranded oligonucleotides by the binding of cis- or trans-diammine-dichloroplatinum(II) to the d(GTG) sequence

21 January 2018

1 reference

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DNA bending induced by covalently bound drugs. Gel electrophoresis and chemical probe studies

21 January 2018

1 reference

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Echinomycin-induced hypersensitivity to osmium tetroxide of DNA fragments incapable of forming Hoogsteen base pairs

21 January 2018

1 reference

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The MerR heavy metal receptor mediates positive activation in a topologically novel transcription complex.

21 January 2018

1 reference

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DNA supercoiling promotes formation of a bent repression loop in lac DNA.

21 January 2018

1 reference

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Detection of intercalation-induced changes in DNA structure by reaction with diethyl pyrocarbonate or potassium permanganate Evidence against the induction of Hoogsteen base pairing by echinomycin

21 January 2018

1 reference

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Diethylpyrocarbonate and permanganate provide evidence for an unusual DNA conformation induced by binding of the antitumour antibiotics bleomycin and phleomycin

21 January 2018

1 reference

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Determination of base sequence in nucleic acids with the electron microscope. V. The thymine-specific reactions of osmium tetroxide with deoxyribonucleic acid and its components

21 January 2018

1 reference

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Unusual conformational effect exerted by Z-DNA upon its neighboring sequences

21 January 2018

1 reference

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Cationic metal-specific structures adopted by the poly(dG) region and the direct repeats in the chicken adult beta A globin gene promoter

21 January 2018

1 reference

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Structure- and sequence-specificity of ozone degradation of supercoiled plasmid DNA.

21 January 2018

1 reference

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Chemical and photochemical probing of DNA complexes

21 January 2018

1 reference

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Footprinting analysis of sequence-specific DNA-drug interactions.

21 January 2018

1 reference

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Chemical nucleases: new reagents in molecular biology

21 January 2018

1 reference

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21 January 2018

1 reference

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Genomic sequencing and in vivo footprinting

21 January 2018

1 reference

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Contacts between Escherichia coli RNA polymerase and an early promoter of phage T7.

21 January 2018

1 reference

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Tet repressor-tet operator contacts probed by operator DNA-modification interference studies

21 January 2018

1 reference

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57 Sequencing end-labeled DNA with base-specific chemical cleavages

21 January 2018

1 reference

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Construction and analysis of monomobile DNA junctions.

21 January 2018

1 reference

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Use of the hydroxyl radical and gel electrophoresis to study DNA structure.

21 January 2018

1 reference

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Psoralens as photoactive probes of nucleic acid structure and function: organic chemistry, photochemistry, and biochemistry

21 January 2018

1 reference

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High resolution psoralen mapping reveals an altered DNA helical structure in the SV40 regulatory region

21 January 2018

1 reference

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Rh(DIP)3(3+): a shape-selective metal complex which targets cruciforms

21 January 2018

1 reference

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Tris(tetramethylphenanthroline)ruthenium(II): a chiral probe that cleaves A-DNA conformations

21 January 2018

1 reference

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STRAND SEPARATION AND SPECIFIC RECOMBINATION IN DEOXYRIBONUCLEIC ACIDS: BIOLOGICAL STUDIES

21 January 2018

1 reference

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STRAND SEPARATION AND SPECIFIC RECOMBINATION IN DEOXYRIBONUCLEIC ACIDS: PHYSICAL CHEMICAL STUDIES

21 January 2018

1 reference

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The 1988 Walter Hubert lecture. Artificial control of gene expression by oligodeoxynucleotides covalently linked to intercalating agents

21 January 2018

1 reference

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Sequence-targeted chemical modifications of nucleic acids by complementary oligonucleotides covalently linked to porphyrins

21 January 2018

1 reference

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Sequence-specific cleavage of double helical DNA by triple helix formation.

21 January 2018

1 reference

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A stable complex between homopyrimidine oligomers and the homologous regions of duplex DNAs.

21 January 2018

1 reference

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Comparative inhibition of chloramphenicol acetyltransferase gene expression by antisense oligonucleotide analogues having alkyl phosphotriester, methylphosphonate and phosphorothioate linkages

21 January 2018

1 reference

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Oligo(alpha-deoxynucleotide)s covalently linked to intercalating agents: differential binding to ribo- and deoxyribopolynucleotides and stability towards nuclease digestion

21 January 2018

1 reference

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Inhibition of restriction endonuclease cleavage via triple helix formation by homopyrimidine oligonucleotides

21 January 2018

1 reference

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Interactions of the dimethyldiazaperopyrenium dication with nucleic acids. 2. Binding to double-stranded polynucleotides

21 January 2018

1 reference

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Sequence-specific artificial photo-induced endonucleases based on triple helix-forming oligonucleotides

21 January 2018

1 reference

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Comparative inhibition of rabbit globin mRNA translation by modified antisense oligodeoxynucleotides

21 January 2018

1 reference

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Conversion of a helix-turn-helix motif sequence-specific DNA binding protein into a site-specific DNA cleavage agent

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Genomic footprinting in mammalian cells with ultraviolet light

21 January 2018

1 reference

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Recent aspects of the photochemistry of nucleic acids and related model compounds

21 January 2018

1 reference

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UV-induced formation of pyrimidine dimers in nucleosome core DNA is strongly modulated with a period of 10.3 bases

21 January 2018

1 reference

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Thymine dimer formation as a probe of the path of DNA in and between nucleosomes in intact chromatin

21 January 2018

1 reference

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Irradiation of the template with high-intensity (pulse-laser) ultraviolet light results in DNA-polymerase termination events at deoxyguanosine residues

21 January 2018

1 reference

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Determination of three-dimensional structures of proteins and nucleic acids in solution by nuclear magnetic resonance spectroscopy

21 January 2018

1 reference

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Direct observation of native DNA structures with the scanning tunneling microscope

21 January 2018

1 reference

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Molecular structure of DNA by scanning tunneling microscopy

21 January 2018

1 reference

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POSSIBLE SEPARATION OF INTERTWINED NUCLEIC ACID CHAINS BY TRANSFER-TWIST.

21 January 2018

1 reference

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Further analysis of the altered secondary structure of superhelical DNA. Sensitivity to methylmercuric hydroxide a chemical probe for unpaired bases.

21 January 2018

1 reference

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Thermodynamic properties of superhelical DNAs

21 January 2018

1 reference

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Statistical mechanics of supercoils and the torsional stiffness of the DNA double helix

21 January 2018

1 reference

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Effects of base sequence on the loop folding in DNA hairpins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

On loop folding in nucleic acid hairpin-type structures

21 January 2018

1 reference

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NMR analysis of DNA junctions: imino proton NMR studies of individual arms and intact junction.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

The anomalous gel migration of a stable cruciform: temperature and salt dependence, and some comparisons with curved DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

The stereochemistry of a four-way DNA junction: a theoretical study

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

The tertiary structure of the four-way DNA junction affords protection against DNase I cleavage

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Duplex-hairpin transitions in DNA: NMR studies on CGCGTATACGCG.

21 January 2018

1 reference

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X-ray structure of a DNA hairpin molecule

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Slow cruciform transitions in palindromic DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

The kinetic properties of cruciform extrusion are determined by DNA base-sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Base methylation and local DNA helix stability. Effect on the kinetics of cruciform extrusion.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Molecular cloning and sequence of the concatemer junction from vaccinia virus replicative DNA. Viral nuclease cleavage sites in cruciform structures

21 January 2018

1 reference

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Influence of cation size and charge on the extrusion of a salt-dependent cruciform

21 January 2018

1 reference

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Helix stability and the mechanism of cruciform extrusion in supercoiled DNA molecules

21 January 2018

1 reference

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Intermediate range effects in DNA. I: Low pH/stress induced conformational changes in the vicinity of an extruded d(AT)n.d(AT) in cruciform

21 January 2018

1 reference

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A structural transition in d(AT)n.d(AT)n inserts within superhelical DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Nature of the open state in long polynucleotide double helices: possibility of soliton excitations

21 January 2018

1 reference

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A Z-like form of poly(dA-dC).poly(dG-dT) in solution?

21 January 2018

1 reference

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Z form of poly d(A-C).poly d(G-T) in solution studied by Raman spectroscopy

21 January 2018

1 reference

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A left-handed (Z) conformation of poly(dA-dC).poly(dG-dT) induced by polyamines

21 January 2018

1 reference

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Salt-induced conformational changes of poly(dA-dT)

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Structural interconversion of alternating purine-pyrimidine inverted repeats cloned in supercoiled plasmids.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

AAF linked to the guanine amino group: a B-Z junction

21 January 2018

1 reference

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DNA structural dynamics: longitudinal breathing as a possible mechanism for the B in equilibrium Z transition

21 January 2018

1 reference

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Reaction conditions affect the specificity of bromoacetaldehyde as a probe for DNA cruciforms and B-Z junctions

21 January 2018

1 reference

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Preliminary spectroscopic characterization of a synthetic DNA oligomer containing a B-Z junction at high salt

21 January 2018

1 reference

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Poly(dG).poly(dC) at neutral and alkaline pH: the formation of triple stranded poly(dG).poly(dG). poly(dC)

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

A molecular model for gene repression

21 January 2018

1 reference

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Protonated polynucleotides structures - 23. The acid-base hysteresis of poly(dG).poly(dC)

21 January 2018

1 reference

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Structures for the polynucleotide complexes poly(dA) with poly (dT) and poly(dT) with poly(dA) with poly (dT).

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Helix formation by guanylic acid

21 January 2018

1 reference

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Physico-chemical properties of nucleosides. 4. Gel formation by quanosine and its analogues

21 January 2018

1 reference

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Nucleoside conformations. IX. A calorimetric study of gel formation by guanylic acids.

21 January 2018

1 reference

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Self-assembled 5'-guanosine monophosphate, nuclear magnetic resonance evidence for a regular, ordered structure and slow chemical exchange

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

The structures of polyinosinic acid.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

DNA structure. The turn of the quadruplex?

21 January 2018

1 reference

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Four-stranded nucleic acid structures 25 years later: from guanosine gels to telomer DNA.

21 January 2018

1 reference

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Association of an S1 nuclease-sensitive structure with short direct repeats 5' of Drosophila heat shock genes

21 January 2018

1 reference

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Possible structures of homopurine-homopyrimidine S1-hypersensitive sites

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Complexes formed by (pyrimidine)n·(purine)nDNAs on lowering the pH are three-stranded

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

An unusually long poly(purine)-poly(pyrimidine) sequence is located upstream from the human thyroglobulin gene

21 January 2018

1 reference

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Structures of homopurine-homopyrimidine tract in superhelical DNA.

21 January 2018

1 reference

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Energetics of the B-H transition in supercoiled DNA carrying d(CT)x.d(AG)x and d(C)n.d(G)n inserts

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Intramolecular DNA triplexes, bent DNA and DNA unwinding elements in the initiation region of an amplified dihydrofolate reductase replicon

21 January 2018

1 reference

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DNA H form requires a homopurine-homopyrimidine mirror repeat.

21 January 2018

1 reference

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Complex structural behavior of oligopurine-oligopyrimidine sequence cloned within the supercoiled plasmid.

21 January 2018

1 reference

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Dam methyltransferase sites located within the loop region of the oligopurine-oligopyrimidine sequences capable of forming H-DNA are undermethylated in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Long (dA)n.(dT)n tracts can form intramolecular triplexes under superhelical stress

21 January 2018

1 reference

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Topology and formation of triple-stranded H-DNA.

21 January 2018

1 reference

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Multiple non-B-DNA conformations of polypurine.polypyrimidine sequences in plasmids

21 January 2018

1 reference

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DNA-sequence and metal-ion specificity of the formation of *H-DNA

21 January 2018

1 reference

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Formation of the triple-stranded polynucleotide helix, poly(A.A.U)

21 January 2018

1 reference

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Protonated polynucleotides structures - 22.CD study of the acid-base titration of poly(dG).poly(dC)

21 January 2018

1 reference

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A long polypyrimidine/polypurine tract induces an altered DNA conformation on the 3' coding region of the adjacent myosin heavy chain gene

21 January 2018

1 reference

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CD of six different conformational rearrangements of poly[d(A-G).d(C-T)] induced by low pH.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Magnesium-dependent supercoiling-induced transition in (dG)n.(dC)n stretches and formation of a new G-structure by (dG)n strand

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Interaction of oligoribocytidylates with T7 DNA in neutral and acid media

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Site-specific oligonucleotide binding represses transcription of the human c-myc gene in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Site-specific cleavage of a yeast chromosome by oligonucleotide-directed triple-helix formation

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

NMR studies of triple-strand formation from the homopurine-homopyrimidine deoxyribonucleotides d(GA)4 and d(TC)4.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Triple-strand formation in the homopurine:homopyrimidine DNA oligonucleotides d(G-A)4 and d(T-C)4

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Structural analysis of the (dA)10.2(dT)10 triple helix

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Formation of a stable triplex from a single DNA strand

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Triple helix formation by oligopurine-oligopyrimidine DNA fragments. Electrophoretic and thermodynamic behavior

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Spectroscopic and calorimetric investigation on the DNA triplex formed by d(CTCTTCTTTCTTTTCTTTCTTCTC) and d(GAGAAGAAAGA) at acidic pH

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

The complex of poly(dG).poly(dC) with arginine: stabilization of the B form and transition to multistranded structures

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

The molecular structure of centromeres and telomeres

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Telomeric DNA oligonucleotides form novel intramolecular structures containing guanine-guanine base pairs

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

S1 nuclease sensitivity of a double-stranded telomeric DNA sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

An unusual DNA structure detected in a telomeric sequence under superhelical stress and at low pH.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Telomeric DNA dimerizes by formation of guanine tetrads between hairpin loops

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Monovalent cation-induced structure of telomeric DNA: the G-quartet model

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

G-DNA: a twice-folded DNA structure adopted by single-stranded oligo(dG) and its implications for telomeres

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Telomere G-strand structure and function analyzed by chemical protection, base analogue substitution, and utilization by telomerase in vitro.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Altered DNA conformations in the gene regulatory region of torsionally-stressed SV40 DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Yeast regulatory sequences preferentially adopt a non-B conformation in supercoiled DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Stable DNA unwinding, not "breathing," accounts for single-strand-specific nuclease hypersensitivity of specific A+T-rich sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

The ease of DNA unwinding as a determinant of initiation at yeast replication origins

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Torsional stress stabilizes extended base unpairing in suppressor sites flanking immunoglobulin heavy chain enhancer

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

21 January 2018

Parallel stranded DNA.

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Relative stability of parallel- and antiparallel-stranded duplex DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Parallel stranded duplex DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Helix-coil transition of parallel-stranded DNA. Thermodynamics of hairpin and linear duplex oligonucleotides

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Characterization of a parallel-stranded DNA hairpin

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Length-dependent formation of parallel-stranded DNA in alternating AT segments

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Parallel DNA: generation of a duplex between two Drosophila sequences in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Can the double helix be parallel?

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

alpha-DNA-V. Parallel annealing, handedness and conformation of the duplex of the unnatural alpha-hexadeoxyribonucleotide alpha-[d(CpApTpGpCpG)] with its beta-complement beta-[d(GpTpApCpGpC)] deduced from high field 1H-NMR.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

An E. coli promoter that regulates transcription by DNA superhelix-induced cruciform extrusion

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Tetracycline promoter mutations decrease non-B DNA structural transitions, negative linking differences and deletions in recombinant plasmids in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Bacterial chromatin. A new twist to an old story

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

RecBC, sbcB independent, (AT)n-mediated deletion of sequences flanking a Xenopus laevis beta globin gene on propagation in E. coli

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

The B- to Z-DNA equilibrium in vivo is perturbed by biological processes

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Osmium tetroxide, N,N,N',N'-tetramethylethylendiamine. A new probe of DNA structure in the cell.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Detection in vivo of protein-DNA interactions within the lac operon of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Intracellular oxidative cleavage of DNA in Escherichia coli by the copper-1,10-phenanthroline complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

An improved method for photofootprinting yeast genes in vivo using Taq polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Superhelical torsion in cellular DNA responds directly to environmental and genetic factors

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Evolutionary selection for perfect hairpin structures in viral DNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Perfect palindromic lac operator DNA sequence exists as a stable cruciform structure in supercoiled DNA in vitro but not in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Eucaryotic DNA: organization of the genome for replication

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

The dynamic distribution and quantification of DNA cruciforms in eukaryotic nuclei

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Specific binding of cruciform DNA structures by a protein from human extracts

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Specific recognition of cruciform DNA by nuclear protein HMG1.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Transcription regulation in vitro by an E. coli promoter containing a DNA cruciform in the '-35' region

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Effect of in vitro transcription on cruciform stability

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Supercoil-induced unusual DNA structures as transcriptional block

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

DNA supercoiling and prokaryotic transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Left-handed Z-DNA in bands of acid-fixed polytene chromosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Z-DNA in transcriptionally active chromosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Z-DNA-forming sequences are spontaneous deletion hot spots

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

The level of Z-DNA in metabolically active, permeabilized mammalian cell nuclei is regulated by torsional strain

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Location of B- and Z-DNA in the chromosomes of a primitive eukaryote dinoflagellate

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

The obtention of simian virus 40 recombinants carrying d(CG.GC)n, d(CA.GT)n and d(CT.GA)n sequences. Stability of the inserted simple repeating sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

In vivo assessment of the Z-DNA-forming potential of d(CA.GT)n and d(CG.GC)n sequences cloned into SV40 minichromosomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Studying single living cells and chromosomes by confocal Raman microspectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Searching for potential Z-DNA in genomic Escherichia coli DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Site of unequal sister chromatid exchange contains a potential Z-DNA-forming tract

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Isolation of Z-DNA binding proteins from SV40 minichromosomes: evidence for binding to the viral control region

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Identification of homologous pairing and strand-exchange activity from a human tumor cell line based on Z-DNA affinity chromatography

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Z-DNA-binding proteins in Escherichia coli purification, generation of monoclonal antibodies and gene isolation

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Detection of Z DNA binding proteins in tissue culture cells

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Insertion of d(pCpG)n.d(pCpG)n into the lacZ gene of Escherichia coli inhibits expression of beta-galactosidase in vivo.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

d(TG)n.d(CA)n sequences upstream of the rat prolactin gene form Z-DNA and inhibit gene transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Supercoiled induced transition to the Z-DNA conformation affects the ability of a d(CG/GC)12 sequence to be organized into nucleosome-cores

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Abundance and degree of dispersion of genomic d(GA)n.d(TC)n sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Distribution of Polypyrimidine . Polypurine Segments in DNA from Diverse Organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Simple sequences are ubiquitous repetitive components of eukaryotic genomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Locations and contexts of sequences that hybridize to poly(dG-dT).(dC-dA) in mammalian ribosomal DNAs and two X-linked genes

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Simple DNA sequences and dispersed repetitive elements in the vicinity of mouse immunoglobulin K light chain genes

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Human globin psi B2 is not a globin-related sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Highly recurring sequence elements identified in eukaryotic DNAs by computer analysis are often homologous to regulatory sequences or protein binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

An oligopurine sequence bias occurs in eukaryotic viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

The DNA sequence of the human beta-globin region is strongly biased in favor of long strings of contiguous purine or pyrimidine residues

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Identification of a long stretch of homopurine.homopyrimidine sequence in a cluster of retroposons in the human genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Nucleosome cores reconstituted from poly (dA-dT) and the octamer of histones

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Chromatin and core particles formed from the inner histones and synthetic polydeoxyribonucleotides of defined sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Immunofluorescent staining of mammalian nuclei and chromosomes with a monoclonal antibody to triplex DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

A cis-acting transcription element of the c-myc gene can assume an H-DNA conformation

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

(dT-dC)n and (dG-dA)n tracts arrest single stranded DNA replication in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Unusual DNA structures at the integration site of an HIV provirus

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Transcription factors that activate the Ultrabithorax promoter in developmentally staged extracts

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Drosophila nuclear proteins bind to regions of alternating C and T residues in gene promoters

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Inhibition of DNA binding proteins by oligonucleotide-directed triple helix formation

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Site-specific inhibition of EcoRI restriction/modification enzymes by a DNA triple helix

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

21 January 2018

DNA supercoiling in vivo

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

High-resolution analysis of lac transcription complexes inside cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Slipped DNA structures within the enhancer region of the Moloney murine leukemia virus

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Sequence signals in eukaryotic upstream regions

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Water: an integral part of nucleic acid structure

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Theoretical analysis of conformational equilibria in superhelical DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Pulsed-field gel electrophoresis of very large DNA molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Physical studies of protein-DNA complexes by footprinting

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

FORMATION OF A THREE-STRANDED POLYNUCLEOTIDE MOLECULE

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

DNA structural alterations in the SV40 enhancer region are retained in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Protonated triplex DNA in E. coli cells as detected by chemical probing

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Cruciform structures in supercoiled DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Left-handed DNA in restriction fragments and a recombinant plasmid

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Coexistence of A- and B-form DNA in a single crystal lattice

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Positively supercoiled DNA in a virus-like particle of an archaebacterium

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Left-handed Z-DNA is induced by supercoiling in physiological ionic conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Chemical probing of homopurine-homopyrimidine mirror repeats in supercoiled DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Protection against UV-induced pyrimidine dimerization in DNA by triplex formation

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Model for DNA and Protein Interactions and the Function of the Operator

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Fluorescence energy transfer shows that the four-way DNA junction is a right-handed cross of antiparallel molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Facile transition of poly[d(TG)·d(CA)] into a left-handed helix in physiological conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

G-strings at chromosome ends

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

A sodium-potassium switch in the formation of four-stranded G4-DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

In vivo consequences of plasmid topology

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Waves of DNA supercoiling

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Antibodies to left-handed Z-DNA bind to interband regions of Drosophila polytene chromosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

Dependence of Z-DNA antibody binding to polytene chromosomes on acid fixation and DNA torsional strain

21 January 2018

1 reference

https://api.crossref.org/works/10.3109%2F10409239109081126

10.3109/10409239109081126

21 January 2018

Identifiers

DOI

1 reference

5 August 2017

1 reference