High resolution psoralen mapping reveals an altered DNA helical structure in the SV40 regulatory region (Q40536420)

21 September 2017

High resolution psoralen mapping reveals an altered DNA helical structure in the SV40 regulatory region (English)

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21 September 2017

1

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21 September 2017

R A Karty

2

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21 September 2017

L M Hallick

series ordinal

3

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21 September 2017

language of work or name

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1 January 1988

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21 September 2017

Nucleic Acids Research

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21 September 2017

16

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21 September 2017

1

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21 September 2017

213-227

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Effect of the B--Z transition in poly(dG-m5dC) . poly(dG-m5dC) on nucleosome formation

21 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334622

Mapping the in vivo arrangement of nucleosomes on simian virus 40 chromatin by the photoaddition of radioactive hydroxymethyltrimethylpsoralen

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334622

The appearance of DNase I hypersensitive sites at the 5′ end of the late SV40 genes is correlated with the transcriptional switch

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334622

Simian virus 40 tandem repeated sequences as an element of the early promoter

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334622

In vivo sequence requirements of the SV40 early promoter region

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334622

57 Sequencing end-labeled DNA with base-specific chemical cleavages

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334622

Termination sites of the in vitro nick-translation reaction on DNA that had photoreacted with psoralen

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334622

The adenine-thymine domain of the simian virus 40 core origin directs DNA bending and coordinately regulates DNA replication

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334622

Psoralens as photoactive probes of nucleic acid structure and function: organic chemistry, photochemistry, and biochemistry

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334622

Staphylococcal nuclease makes a single non-random cut in the simian virus 40 viral minichromosome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334622

Preferential in vitro assembly of nucleosome cores on some AT-rich regions of SV40 DNA

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334622

A stretch of “late” SV40 viral DNA about 400 bp long which includes the origin of replication is specifically exposed in SV40 minichromosomes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334622

Origin of DNA replication in papovavirus chromatin is recognized by endogenous endonuclease

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334622

Sites in simian virus 40 chromatin which are preferentially cleaved by endonucleases

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334622

SV40 viral minichromosome: preferential exposure of the origin of replication as probed by restriction endonucleases

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334622

Photochemical addition of the cross-linking reagent 4,5', 8-trimethylpsoralen (trioxaslen) to intracellular and viral simian virus 40 DNA-histone complexes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334622

The photoaddition of trimethylpsoralen to Drosophila melanogaster nuclei: a probe for chromatin substructure

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334622

SV40 virus particles lack a psoralen-accessible origin and contain an altered nucleoprotein structure

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334622

Sequence-specific interaction of histones with the simian virus 40 enhancer region in vitro

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334622

Cross-linking of DNA in situ as a probe for chromatin structure

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334622

Cross-linking of DNA with trimethylpsoralen is a probe for chromatin structure

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334622

Induction of altered chromatin structures by simian virus 40 enhancer and promoter elements

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334622

Negatively supercoiled simian virus 40 DNA contains Z-DNA segments within transcriptional enhancer sequences

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334622

A nucleosome-free region in SV40 minichromosomes

20 August 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/2829116

12 December 2020

Absence of nucleosomes in a fraction of SV40 chromatin between the origin of replication and the region coding for the late leader RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/2829116

12 December 2020

Torsional tension in the DNA double helix measured with trimethylpsoralen in living E. coli cells: analogous measurements in insect and human cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/2829116

12 December 2020

Phasing of Nucleosomes in SV40 Chromatin Reconstituted In Vitro1

1 reference

https://pubmed.ncbi.nlm.nih.gov/2829116

12 December 2020

-Kinked DNA--a Structure That Gives Rise to Drug Intercalation and DNA Breathing--and Its Wider Significance in Determining the Premelting and Melting Behavior of DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/2829116

12 December 2020

Use of light for footprinting DNA in vivo

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https://pubmed.ncbi.nlm.nih.gov/2829116

12 December 2020

Efficient formation of a crosslinkable HMT monoadduct at the Kpn I recognition site

1 reference

https://pubmed.ncbi.nlm.nih.gov/2829116

12 December 2020

An altered DNA conformation in origin region I is a determinant for the binding of SV40 large T antigen

1 reference

https://pubmed.ncbi.nlm.nih.gov/2829116

12 December 2020

THE SITE-SPECIFIC INHIBITION OF Bgl I CLEAVAGE BY PSORALEN PHOTOADDUCTS

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https://pubmed.ncbi.nlm.nih.gov/2829116

12 December 2020

Site specificity of psoralen-DNA interstrand cross-linking determined by nuclease Bal31 digestion

1 reference

https://pubmed.ncbi.nlm.nih.gov/2829116

12 December 2020

Identifiers

DOI

10.1093/NAR/16.1.213

1 reference

journals/nar/OstranderKH88

21 September 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

21 September 2017

PubMed publication ID

2829116

1 reference