The contrasting structures of mismatched DNA sequences containing looped-out bases (bulges) and multiple mismatches (bubbles). (Q40453370)

20 September 2017

The contrasting structures of mismatched DNA sequences containing looped-out bases (bulges) and multiple mismatches (bubbles). (English)

1 reference

20 September 2017

A Bhattacharyya

1

1 reference

PMC publication ID

318415

20 September 2017

D M Lilley

series ordinal

2

1 reference

20 September 2017

1 September 1989

1 reference

20 September 2017

Nucleic Acids Research

1 reference

20 September 2017

17

1 reference

20 September 2017

17

1 reference

20 September 2017

6821-6840

1 reference

Bent helical structure in kinetoplast DNA.

20 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

Model for the participation of quasi-palindromic DNA sequences in frameshift mutation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

Polymer support oligonucleotide synthesis XVIII: use of beta-cyanoethyl-N,N-dialkylamino-/N-morpholino phosphoramidite of deoxynucleosides for the synthesis of DNA fragments simplifying deprotection and isolation of the final product

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

The locus of sequence-directed and protein-induced DNA bending

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

A new pair of M13 vectors for selecting either DNA strand of double-digest restriction fragments

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

High sequence specificity of micrococcal nuclease

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

The inverted repeat as a recognizable structural feature in supercoiled DNA molecules

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

57 Sequencing end-labeled DNA with base-specific chemical cleavages

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

DNA bending at adenine . thymine tracts

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

Diethyl pyrocarbonate: a chemical probe for secondary structure in negatively supercoiled DNA.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

(A-T)n tracts embedded in random sequence DNA--formation of a structure which is chemically reactive and torsionally deformable

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

Diethyl pyrocarbonate: a chemical probe for DNA cruciforms

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

The three-dimensional structure of a DNA duplex containing looped-out bases

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

22 September 2017

DNA mismatch correction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

RNA binding site of R17 coat protein

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

Reactivity of cytosine and thymine in single-base-pair mismatches with hydroxylamine and osmium tetroxide and its application to the study of mutations

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

Highly selective chemical modification of cruciform loops by diethyl pyrocarbonate

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

Deletions of bases in one strand of duplex DNA, in contrast to single-base mismatches, produce highly kinked molecules: possible relevance to the folding of single-stranded nucleic acids

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

Local destabilisation of a DNA double helix by a T--T wobble pair

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

Synthesis and thermal melting behavior of oligomer.polymer complexes containing defined lengths of mismatched dA·dG and dG·dG nucleotides

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

DNA sequencing with chain-terminating inhibitors

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

Polynucleotide kinase exchange reaction: quantitave assay for restriction endonuclease-generated 5'-phosphoroyl termini in DNA.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

Initiation of heteroduplex-loop repair by T4-encoded endonuclease VII in vitro

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

The supercoil-stabilised cruciform of ColE1 is hyper-reactive to osmium tetroxide

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

Association of an S1 nuclease-sensitive structure with short direct repeats 5' of Drosophila heat shock genes

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

Sequence dependence of the curvature of DNA: a test of the phasing hypothesis

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

Chemical probes of DNA conformation: detection of Z-DNA at nucleotide resolution.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

Extrahelical adenosine stacks into right-handed DNA: solution conformation of the d(C-G-C-A-G-A-G-C-T-C-G-C-G) duplex deduced from distance geometry analysis of nuclear Overhauser effect spectra.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

Structure, dynamics, and thermodynamics of mismatched DNA oligonucleotide duplexes d(CCCAGGG)2 and d(CCCTGGG)2.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

Construction of a systematic set of tRNA mutants by ligation of synthetic oligonucleotides into defined single-stranded gaps.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

Fine mapping of DNA single-stranded regions using base-specific chemical probes: study of an open complex formed between RNA polymerase and the lac UV5 promoter.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

Trans-complementable copy-number mutants of plasmid ColE1.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=318415

Structural model for an oligonucleotide containing a bulged guanosine by NMR and energy minimization

20 August 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/2780311

12 December 2020

Detection of single base substitutions in total genomic DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/2780311

12 December 2020

Cruciform structures in supercoiled DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/2780311

12 December 2020

Dynamic, Sequence-dependent DNA Structure as Exemplified by Cruciform Extrusion from Inverted Repeats in Negatively Supercoiled DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/2780311

12 December 2020

A pH-dependent structural transition in the homopurine-homopyrimidine tract in superhelical DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/2780311

12 December 2020

Pyrimidine.pyrimidine base-pair mismatches in DNA. A nuclear magnetic resonance study of T.T pairing at neutral pH and C.C pairing at acidic pH in dodecanucleotide duplexes

1 reference

https://pubmed.ncbi.nlm.nih.gov/2780311

12 December 2020

Crystal structure of 15-mer DNA duplex containing unpaired bases

1 reference

https://pubmed.ncbi.nlm.nih.gov/2780311

12 December 2020

On the sequence determinants and flexibility of the kinetoplast DNA fragment with abnormal gel electrophoretic mobilities

1 reference

https://pubmed.ncbi.nlm.nih.gov/2780311

12 December 2020

DNA bending induced by cruciform formation

1 reference

https://pubmed.ncbi.nlm.nih.gov/2780311

12 December 2020

Reaction of diethyl pyrocarbonate with nucleic acid components. Adenosine

1 reference

https://pubmed.ncbi.nlm.nih.gov/2780311

12 December 2020

Conformational perturbation due to an extra adenosine in a self-complementary oligodeoxynucleotide duplex

1 reference

https://pubmed.ncbi.nlm.nih.gov/2780311

12 December 2020

Kinetics for exchange of imino protons in the d(C-G-C-G-A-A-T-T-C-G-C-G) double helix and in two similar helices that contain a G.cntdot.T base pair, d(C-G-T-G-A-A-T-T-C-G-C-G), and an extra adenine, d(C-G-C-A-G-A-A-T-T-C-G-C-G)

1 reference

https://pubmed.ncbi.nlm.nih.gov/2780311

12 December 2020

A structural basis for S1 nuclease sensitivity of double-stranded DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/2780311

12 December 2020

DNA bending by the bulge defect

1 reference

https://pubmed.ncbi.nlm.nih.gov/2780311

12 December 2020

Reaction of diethyl pyrocarbonate with nucleic acid components. Bases and nucleosides derived from guanine, cytosine, and uracil

1 reference

https://pubmed.ncbi.nlm.nih.gov/2780311

12 December 2020

Extra adenosine stacks into the self-complementary d(CGCAGAATTCGCG) duplex in solution

1 reference

https://pubmed.ncbi.nlm.nih.gov/2780311

12 December 2020

Identifiers

DOI

10.1093/NAR/17.17.6821

1 reference

20 September 2017

1 reference

PMC publication ID

318415

20 September 2017

PubMed publication ID

2780311

1 reference

PMC publication ID

318415