Sign in to use this feature.

Years

Between: -

Subjects

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Journals

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Article Types

Countries / Regions

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Search Results (9,568)

Search Parameters:
Keywords = rs7574865

Order results
Result details
Results per page
Select all
Export citation of selected articles as:
17 pages, 1565 KiB  
Article
Efficient Separation of Oil/Water by a Biodegradable and Superhydrophobic Composite Based on Loofah and Rice Straw
by Mamadou Souare, Changqing Dong, Tong Xing, Junjiao Zhang and Xiaoying Hu
Membranes 2024, 14(11), 243; https://doi.org/10.3390/membranes14110243 - 18 Nov 2024
Abstract
Membrane filtration is one of the preferred choices for petroleum wastewater disposal due to its simplicity and low energy consumption. In this paper, a biodegradable superhydrophobic membrane based on loofah and rice straw (LF-RS) was prepared and modified with dodecyltriethoxysilane to improve its [...] Read more.
Membrane filtration is one of the preferred choices for petroleum wastewater disposal due to its simplicity and low energy consumption. In this paper, a biodegradable superhydrophobic membrane based on loofah and rice straw (LF-RS) was prepared and modified with dodecyltriethoxysilane to improve its stability, morphology, and performance. The membrane showed an efficiency of 99.06% for oil/water separation with an average water flux of 2057.37 Lm−2h−1 and a tensile strength of 11.19 MPa. The tensile strength of the LF-RS membrane was 322.47% higher than that of the PVDF membrane and 126.58% higher than that of the commercially available nitrocellulose membrane. Through molecular simulations, we showed a 96.3% reduction in interaction energy between water and membrane post-modification, which is beneficial for increasing the contact angle and separation performance. This study provides an option for the large-scale, cost-effective fabrication of eco-friendly membranes for pollutant removal. Full article
(This article belongs to the Special Issue Membrane Separation and Water Treatment: Modeling and Application)
16 pages, 5131 KiB  
Article
Agronomic Performance and Technological Attributes of Sugarcane Cultivars Under Split-Irrigation Management
by Henrique Fonseca Elias de Oliveira, Fernando Henrique Arriel, Frederico Antônio Loureiro Soares, Edson Cabral da Silva, Marcio Mesquita, Thiago Dias Silva, Jhon Lennon Bezerra da Silva, Cleiton Mateus Sousa, Marcos Vinícius da Silva, Ailton Alves de Carvalho and Thieres George Freire da Silva
AgriEngineering 2024, 6(4), 4337-4352; https://doi.org/10.3390/agriengineering6040245 (registering DOI) - 18 Nov 2024
Abstract
In addition to being an important instrument in the search for increasingly greater productivity, agricultural production with adequate use of irrigation systems significantly minimizes the impact on water resources. To meet high productivity and yield, as well as industrial quality, a series of [...] Read more.
In addition to being an important instrument in the search for increasingly greater productivity, agricultural production with adequate use of irrigation systems significantly minimizes the impact on water resources. To meet high productivity and yield, as well as industrial quality, a series of studies on sugarcane cultivation are necessary. Despite being able to adapt to drought, sugarcane is still a crop highly dependent on irrigation to guarantee the best quality standards. Our study aimed to analyze the agronomic performance and technological attributes of two sugarcane cultivars, evaluating the vegetative and productive pattern, as well as the industrial quality of the cultivars RB92579 and SP80–1816, which were cultivated under split-irrigation management in the Sugarcane Research Unit of IF Goiano—Campus Ceres, located in the state of Goiás in the Central-West region of Brazil. A self-propelled sprinkler irrigation system (IrrigaBrasil) was used, duly equipped with Twin 120 Komet sprinklers (Fremon, USA). The cultivars were propagated vegetatively and planted in 0.25 m deep furrows with 1.5 m between rows. The experiment was conducted in a completely randomized design (CRD), with a bifactorial split-plot scheme (5 × 2), with four replications, where the experimental plots were subjected to one of the following five split-irrigation management systems: 00 mm + 00 mm; 20 mm + 40 mm; 30 mm + 30 mm; 40 mm + 20 mm; or 60 mm + 00 mm. At 60 and 150 days after planting (DAP), the following respective irrigation management systems were applied: 00 mm + 00 mm and 20 mm + 40 mm. Biometric and technological attributes, such as plant height (PH) and stem diameter (SD), were evaluated in this case at 30-day intervals, starting at 180 DAP and ending at 420 DAP. Measurements of soluble solids content (°Brix), apparent sucrose content (POL), fiber content (Fiber), juice purity (PZA), broth POL (BP), reducing sugars (RS), and total recoverable sugars (TRS) were made by sampling stems at harvest at 420 DAP. RB92579 showed total recoverable sugar contents 11.89% and 8.86% higher than those recorded for SP80–1816 under split-irrigation with 40 mm + 20 mm and 60 mm + 00 mm, respectively. Shoot productivity of RB92579 reached 187.15 t ha−1 under split-irrigation with 60 mm + 00 mm, which was 42.16% higher than the shoot productivity observed for SP80–1816. Both cultivars showed higher qualitative and quantitative indices in treatments that applied higher volumes of water in the initial phase of the culture, coinciding with the dry season. Sugarcane cultivar RB92579 showed a better adaptation to the prevailing conditions in the study than the SP80–1816 cultivar. Full article
(This article belongs to the Section Agricultural Irrigation Systems)
Show Figures

Figure 1

9 pages, 583 KiB  
Article
Family’s Caregiving Status and Post-Stroke Functional Recovery During Subacute Period from Discharge to Home: A Retrospective Study
by Jungmin So and Moon-Ho Park
J. Clin. Med. 2024, 13(22), 6923; https://doi.org/10.3390/jcm13226923 (registering DOI) - 17 Nov 2024
Viewed by 252
Abstract
Background/Objectives: Family members, often informal caregivers, play a crucial role in providing home care for stroke survivors. The period following discharge to home after receiving acute stroke management in a hospital includes the subacute phase of stroke and remains critical to the [...] Read more.
Background/Objectives: Family members, often informal caregivers, play a crucial role in providing home care for stroke survivors. The period following discharge to home after receiving acute stroke management in a hospital includes the subacute phase of stroke and remains critical to the recovery of stroke patients. This study evaluated the association between family caregiving and post-stroke functional recovery after discharge to home. Methods: Data from 402 patients with stroke were obtained from the Korea University Ansan Hospital Stroke Center from January 2019 to May 2022. The family’s caregiving status was evaluated for family burden and supportable environment in the home. This study’s outcome of interest was the modified Rankin Scale (mRS) at discharge to home and three months after stroke onset. The repeated mRS scores were analyzed using the Linear Mixed Model. Results: Median days from discharge to 3 months after stroke onset was 81.0 days. The median score of mRS at discharge was 2.0, and the score at three months after stroke onset was 2.0. The distribution of mRS score 0–2 was 60.9% at discharge and 72.1% at three months after stroke onset. In Linear Mixed Models after adjustments with covariables, the family’s caregiving status was positively associated with repeated mRS scores (β = 0.17; 95% confidence interval = 0.11, 0.23; p < 0.001). Conclusions: These findings suggest that family caregiving to patients with stroke might be associated with post-stroke functional recovery within the period from discharge to home until three months after stroke onset. Full article
(This article belongs to the Section Clinical Neurology)
Show Figures

Figure 1

11 pages, 878 KiB  
Article
Effects of Different Exercise Doses Through an Augmented Reality Exergame in Older Adults: A Pilot Randomized Controlled Trial
by Javier Bravo-Aparicio, Patricia Domínguez-López, Cristina Díaz-González, Diego Martín-Caro Álvarez, David Martín-Caro Álvarez and Hector Beltran-Alacreu
Appl. Sci. 2024, 14(22), 10592; https://doi.org/10.3390/app142210592 - 17 Nov 2024
Viewed by 280
Abstract
(1) Background: Growth in the use of video games has spurred innovations in the health sector, especially through exergames, which promote physical activity using interactive technologies like augmented reality. Exergames are shown to enhance exercise motivation and engagement, yet enjoyment remains inconsistent across [...] Read more.
(1) Background: Growth in the use of video games has spurred innovations in the health sector, especially through exergames, which promote physical activity using interactive technologies like augmented reality. Exergames are shown to enhance exercise motivation and engagement, yet enjoyment remains inconsistent across studies. This pilot study aims to provide evidence on how different exergaming doses affect exercise heart rate, perceived exertion, adverse effects, and enjoyment in older adults. (2) Methods: A pilot randomized controlled trial was conducted to compare different doses of exercise through video games (13 vs. 28 min) in older adults living in a nursing home. A single bout of exergaming was provided to assess the outcomes: heart rate, rate of perceived exertion, physical activity enjoyment scale score, and adverse effects. (3) Results: Thirty-two older adults were recruited. This study revealed no significant differences in heart rate between groups (p = 0.1). There is a weak correlation between the rate of perceived exertion and the level of enjoyment (rs = −0.193) and between the total time of the intervention and the incidence of adverse effects (rs = 0.295). (4) Conclusions: The use of a higher dose of exergaming is effective in achieving moderate physical intensity. Also, the results suggest the intervention was generally well tolerated and enjoyed by older adults, with no serious adverse effects reported. Full article
(This article belongs to the Special Issue Advances in Assessment of Physical Performance)
Show Figures

Figure 1

20 pages, 19658 KiB  
Article
Chemical Composition, In Silico Investigations and Evaluation of Antifungal, Antibacterial, Insecticidal and Repellent Activities of Eucalyptus camaldulensis Dehn. Leaf Essential Oil from ALGERIA
by Ghozlane Barboucha, Noureddine Rahim, Houssem Boulebd, Amina Bramki, Anna Andolfi, Maria Michela Salvatore and Marco Masi
Plants 2024, 13(22), 3229; https://doi.org/10.3390/plants13223229 - 17 Nov 2024
Viewed by 287
Abstract
This study investigated the phytochemical profile and evaluated the antimicrobial and insecticidal properties of Eucalyptus camaldulensis Dehn. essential oil (EC-EO) from Algeria, using in vitro and in silico approaches. The yield of EC-EO was 0.27%, with gas chromatography-mass spectrometry (GC-MS) revealing spathulenol (58.24%), [...] Read more.
This study investigated the phytochemical profile and evaluated the antimicrobial and insecticidal properties of Eucalyptus camaldulensis Dehn. essential oil (EC-EO) from Algeria, using in vitro and in silico approaches. The yield of EC-EO was 0.27%, with gas chromatography-mass spectrometry (GC-MS) revealing spathulenol (58.24%), cryptone (17.22%), and o-cymene (15.53%) as the major compounds. EC-EO exhibited notable antibacterial activity, particularly against Salmonella typhimurium (14 ± 1.00 mm) and Staphylococcus aureus (14.5 ± 0.50 mm). It also showed effective antifungal activity against Penicillium sp. (11.5 ± 0.49 mm), Candida albicans (11.2 ± 0.29 mm), and Aspergillus fumigatus (9.8 ± 0.27 mm). Insecticidal assays against Tribolium castaneum were conducted using contact toxicity, fumigation toxicity, and repellent activity methods. The median lethal concentration (LC50) for contact toxicity was 0.011 μL/insect after 72 h, while the fumigation test had an LC50 of 122.29 μL/L air. Repellent activity tests showed percentage repellency (PR) values exceeding 80% after 6 h. The molecular geometry and electronic properties of the main compounds were studied using density functional theory (DFT) calculations. In addition, the interaction mode and binding affinity of these molecules with three key enzymes involved in antimicrobial activity, DNA gyrase, dihydrofolate reductase (DHFR) and Tyrosyl-tRNA synthetase (TyrRS), were explored by molecular docking. Full article
Show Figures

Figure 1

18 pages, 2502 KiB  
Article
Effects of Co-Exposure to Benzene, Toluene, and Xylene, Polymorphisms of microRNA Genes, and Their Interactions on Genetic Damage in Chinese Petrochemical Workers
by Shuangqi Li, Xiaojing Liao, Rui Ma, Na Deng, Haimei Wu, Zhaorui Zhang, Liping Chen, Qing Wang, Qilong Liao, Qianxi Li, Xinyi Ouyang, Yongmei Xiao and Qifei Deng
Toxics 2024, 12(11), 821; https://doi.org/10.3390/toxics12110821 (registering DOI) - 16 Nov 2024
Viewed by 287
Abstract
Benzene, toluene, and xylene (BTX) co-exist in human environments, yet their individual and combined effects on genetic damage at low exposure levels are not fully understood. Additionally, single nucleotide polymorphisms in microRNAs (mirSNPs) might be involved in cancer etiology by affecting the related [...] Read more.
Benzene, toluene, and xylene (BTX) co-exist in human environments, yet their individual and combined effects on genetic damage at low exposure levels are not fully understood. Additionally, single nucleotide polymorphisms in microRNAs (mirSNPs) might be involved in cancer etiology by affecting the related early health damage. To investigate the influence of BTX exposure, mirSNPs, and their interactions on genetic damage, we conducted a cross-sectional study in 1083 Chinese petrochemical workers, quantifying the BTX cumulative exposure levels and multiple genetic damage biomarkers. Additionally, we genotyped multiple common mirSNPs. Benzene and a BTX mixture were positive associated with the olive tail moment (OTM) and tail DNA% (p < 0.05). Higher levels of toluene and xylene enhanced the association of benzene with genetic damage levels. Genotypes and/or mutant allele counts of miR-4482-related rs11191980, miR-4433-related rs136547, miR-27a-related rs2594716, miR-3130-related rs725980, and miR-3928-related rs878718 might significantly influence genetic damage levels. Stronger effect estimates of benzene/BTX exposure were found in carriers of miR-196a-2-related rs11614913 heterozygotes and of wild homozygotes of miR-1269b-related rs12451747, miR-612-related rs12803915, and miR-4804-related rs266437. Our findings provide further support of the involvement of BTX co-exposure, mirSNPs, and their gene–environment interactions in determining the severity of DNA strand break in a complex manner. Full article
(This article belongs to the Special Issue Health Effects of Exposure to Environmental Pollutants)
Show Figures

Graphical abstract

21 pages, 2135 KiB  
Article
Physiological Response of Lettuce (Lactuca sativa L.) Grown on Technosols Designed for Soil Remediation
by Mateo González-Quero, Antonio Aguilar-Garrido, Mario Paniagua-López, Carmen García-Huertas, Manuel Sierra-Aragón and Begoña Blasco
Plants 2024, 13(22), 3222; https://doi.org/10.3390/plants13223222 - 16 Nov 2024
Viewed by 179
Abstract
This study focuses on the physiological response of lettuce grown on Technosols designed for the remediation of soils polluted by potentially harmful elements (PHEs: As, Cd, Cu, Fe, Pb, and Zn). Lettuce plants were grown in five treatments: recovered (RS) and polluted soil [...] Read more.
This study focuses on the physiological response of lettuce grown on Technosols designed for the remediation of soils polluted by potentially harmful elements (PHEs: As, Cd, Cu, Fe, Pb, and Zn). Lettuce plants were grown in five treatments: recovered (RS) and polluted soil (PS) as controls, and three Technosols (TO, TS, and TV) consisting of 60% PS mixed with 2% iron sludge, 20% marble sludge, and 18% organic wastes (TO: composted olive waste, TS: composted sewage sludge, and TV: vermicompost of garden waste). The main soil properties and PHE solubility were measured, together with physiological parameters related to phytotoxicity in lettuce such as growth, photosynthetic capacity, oxidative stress, and antioxidant defence. All Technosols improved unfavourable conditions of PS (i.e., neutralised acidity and enhanced OC content), leading to a significant decrease in Cd, Cu, and Zn mobility. Nevertheless, TV was the most effective as the reduction in PHEs mobility was higher. Furthermore, lettuce grown on TV and TO showed higher growth (+90% and +41%) than PS, while no increase in TS. However, lower oxidative stress and impact on photosynthetic rate occurred in all Technosols compared to PS (+344% TV, +157% TO, and +194% TS). This physiological response of lettuce proves that PHE phytotoxicity is reduced by Technosols. Thus, this ecotechnology constitutes a potential solution for soil remediation, with effectiveness of Technosols depending largely on its components. Full article
(This article belongs to the Special Issue Potential Hazardous Elements Accumulation in Plants)
Show Figures

Figure 1

18 pages, 3865 KiB  
Article
Rapid Authentication of Intact Stingless Bee Honey (SBH) by Portable LED-Based Fluorescence Spectroscopy and Chemometrics
by Diding Suhandy, Dimas Firmanda Al Riza, Meinilwita Yulia, Kusumiyati Kusumiyati, Mareli Telaumbanua and Hirotaka Naito
Foods 2024, 13(22), 3648; https://doi.org/10.3390/foods13223648 - 16 Nov 2024
Viewed by 433
Abstract
Indonesian stingless bee honey (SBH) of Geniotrigona thoracica is popular and traded at an expensive price. Brown rice syrup (RS) is frequently used as a cheap adulterant for an economically motivated adulteration (EMA) in SBH. In this study, authentic Indonesian Geniotrigona thoracica SBH [...] Read more.
Indonesian stingless bee honey (SBH) of Geniotrigona thoracica is popular and traded at an expensive price. Brown rice syrup (RS) is frequently used as a cheap adulterant for an economically motivated adulteration (EMA) in SBH. In this study, authentic Indonesian Geniotrigona thoracica SBH of Acacia mangium (n = 100), adulterated SBH (n = 120), fake SBH (n = 100), and RS (n = 200) were prepared. In short, 2 mL of each sample was dropped directly into an innovative sample holder without any sample preparation including no dilution. Fluorescence intensity was acquired using a fluorescence spectrometer. This portable instrument is equipped with a 365 nm LED lamp as the fixed excitation source. Principal component analysis (PCA) was calculated for the smoothed spectral data. The results showed that the authentic SBH and non-SBH (adulterated SBH, fake SBH, and RS) samples could be well separated using the smoothed spectral data. The cumulative percentage variance of the first two PCs, 98.4749% and 98.4425%, was obtained for calibration and validation, respectively. The highest prediction accuracy was 99.5% and was obtained using principal component analysis–linear discriminant analysis (PCA-LDA). The best partial least square (PLS) calibration was obtained using the combined interval with R2cal = 0.898 and R2val = 0.874 for calibration and validation, respectively. In the prediction, the developed model could predict the adulteration level in the adulterated honey samples with an acceptable ratio of prediction to deviation (RPD) = 2.282, and range error ratio (RER) = 6.612. Full article
(This article belongs to the Section Food Analytical Methods)
Show Figures

Figure 1

11 pages, 2093 KiB  
Article
An Improved Process for Solving the Sintering Problem of Al-Si Alloy Powder Metallurgy
by Hexin Tian, Fachang Zhao, Dongmei Ma, Xingming Zhao, Jingran Meng, Guangan Zhang and Fufa Wu
Metals 2024, 14(11), 1295; https://doi.org/10.3390/met14111295 - 16 Nov 2024
Viewed by 269
Abstract
The Al-Si alloy prepared by the traditional powder metallurgy method has the problems of difficult sintering and low mechanical properties. In this paper, rotary extrusion combined with rapid solidification/powder metallurgy technology (RS/PM) is proposed and designed to produce an Al-10Si alloy. In subsequent [...] Read more.
The Al-Si alloy prepared by the traditional powder metallurgy method has the problems of difficult sintering and low mechanical properties. In this paper, rotary extrusion combined with rapid solidification/powder metallurgy technology (RS/PM) is proposed and designed to produce an Al-10Si alloy. In subsequent sintering at different temperatures, better metallurgical bonding between particles can be achieved to fulfil the aim of improving the mechanical properties of the material. Additionally, the continuous preparation of materials can be achieved. Finally, it is verified that the density of the Al-10Si alloy sintered at 525 °C is 2.61 g/cm3, reaching 97.0% of the theoretical density, and the tensile strength reaches 336 MPa, which is much higher than that of the alloy prepared by the traditional casting method and powder metallurgy method. Full article
Show Figures

Figure 1

17 pages, 8788 KiB  
Article
Effects of Deep Tillage on Rhizosphere Soil and Microorganisms During Wheat Cultivation
by Junkang Sui, Chenyu Wang, Feifan Hou, Xueting Shang, Qiqi Zhao, Yuxuan Zhang, Yongqiang Hou, Xuewen Hua and Pengfei Chu
Microorganisms 2024, 12(11), 2339; https://doi.org/10.3390/microorganisms12112339 - 16 Nov 2024
Viewed by 368
Abstract
The production of wheat is fundamentally interconnected with worldwide food security. The practice of deep tillage (DT) cultivation has shown advantages in terms of soil enhancement and the mitigation of diseases and weed abundance. Nevertheless, the specific mechanisms behind these advantages are unclear. [...] Read more.
The production of wheat is fundamentally interconnected with worldwide food security. The practice of deep tillage (DT) cultivation has shown advantages in terms of soil enhancement and the mitigation of diseases and weed abundance. Nevertheless, the specific mechanisms behind these advantages are unclear. Accordingly, we aimed to clarify the influence of DT on rhizosphere soil (RS) microbial communities and its possible contribution to the improvement of soil quality. Soil fertility was evaluated by analyzing several soil characteristics. High-throughput sequencing techniques were utilized to explore the structure and function of rhizosphere microbial communities. Despite lowered fertility levels in the 0–20 cm DT soil layer, significant variations were noted in the microbial composition of the DT wheat rhizosphere, with Acidobacteria and Proteobacteria being the most prominent. Furthermore, the abundance of Bradyrhizobacteria, a nitrogen-fixing bacteria within the Proteobacteria phylum, was significantly increased. A significant increase in glycoside hydrolases within the DT group was observed, in addition to higher abundances of amino acid and carbohydrate metabolism genes in the COG and KEGG databases. Moreover, DT can enhance soil quality and boost crop productivity by modulating soil microorganisms’ carbon and nitrogen fixation capacities. Full article
(This article belongs to the Special Issue Advances in Soil Microbial Ecology, 2nd Edition)
Show Figures

Figure 1

15 pages, 4973 KiB  
Article
Chondrogenic Cancer Grading by Combining Machine and Deep Learning with Raman Spectra of Histopathological Tissues
by Gianmarco Lazzini and Mario D’Acunto
Appl. Sci. 2024, 14(22), 10555; https://doi.org/10.3390/app142210555 - 15 Nov 2024
Viewed by 295
Abstract
Raman spectroscopy (RS) is a promising tool for cancer diagnosis. In particular, in the last years several studies have demonstrated how the diagnostic performances of RS can be significantly improved by employing machine learning (ML) algorithms for the interpretation of Raman-based data. Recently, [...] Read more.
Raman spectroscopy (RS) is a promising tool for cancer diagnosis. In particular, in the last years several studies have demonstrated how the diagnostic performances of RS can be significantly improved by employing machine learning (ML) algorithms for the interpretation of Raman-based data. Recently, it has been demonstrated that RS can perform an accurate classification of chondrosarcoma tissues. Chondrosarcoma is a cancer of bones, that can occur in the soft tissues near the bones. It is normally characterized by three different malignant degrees and a benign counterpart, knows as enchondroma. In line with these findings, in this paper, we exploited ML algorithms to distinguish, as well as possible, between the three grades of chondrosarcoma and to distinguish between chondrosarcoma and enchondroma. We obtained a high level of accuracy of classification by analyzing a dataset composed of a relatively small number of Raman spectra, collected in a previous study by one of the authors of this paper. Such spectra were acquired from micrometric tissue sections with a confocal Raman microscope. We tested the classification performances of a support vector machine (SVM) and a random forest classifier (RFC), as representatives of ML algorithms, and two versions of the multi-layer perceptron (MLPC) as representatives of deep learning (DL). These models, especially RFC and MLPC, showed excellent classification performances, with accuracy reaching 99.7%. This outcome makes the aforementioned models a promising route for future improvements of diagnostic devices focused on detecting cancerous bone tissues. Alongside the diagnostic purpose, the aforementioned approach allowed us to identify characteristic molecules, i.e., amino acids, nucleic acids, and bioapatites, relevant for obtaining the final diagnostic response, through the use of a tool named by us Raman Band Identification (RBI). The method to evaluate RBI is the most important contribution of this paper, because RBI could represent a relevant parameter for the identification of biochemical processes on the basis of the tumor progression and associated malignant degree. In turn, the spectral bands highlighted by RBI could provide precious indicators in an attempt to restrict the spectral acquisition to specific Raman bands. This last objective could help to reduce the amount of experimental data needed to obtain an accurate final grading outcome, with a consequent reduction in the computational cost. Full article
Show Figures

Figure 1

33 pages, 432 KiB  
Article
Are the Common Genetic 3′UTR Variants in ADME Genes Playing a Role in Tolerance of Breast Cancer Chemotherapy?
by Karolina Tęcza, Magdalena Kalinowska-Herok, Dagmara Rusinek, Artur Zajkowicz, Aleksandra Pfeifer, Małgorzata Oczko-Wojciechowska and Jolanta Pamuła-Piłat
Int. J. Mol. Sci. 2024, 25(22), 12283; https://doi.org/10.3390/ijms252212283 - 15 Nov 2024
Viewed by 194
Abstract
We studied the associations between 3′UTR genetic variants in ADME genes, clinical factors, and the risk of breast cancer chemotherapy toxicity. Those variants and factors were tested in relation to seven symptoms belonging to myelotoxicity (anemia, leukopenia, neutropenia), gastrointestinal side effects (vomiting, nausea), [...] Read more.
We studied the associations between 3′UTR genetic variants in ADME genes, clinical factors, and the risk of breast cancer chemotherapy toxicity. Those variants and factors were tested in relation to seven symptoms belonging to myelotoxicity (anemia, leukopenia, neutropenia), gastrointestinal side effects (vomiting, nausea), nephrotoxicity, and hepatotoxicity, occurring in overall, early, or recurrent settings. The cumulative risk of overall symptoms of anemia was connected with AKR1C3 rs3209896 AG, ERCC1 rs3212986 GT, and >6 cycles of chemotherapy; leukopenia was determined by ABCC1 rs129081 allele G and DPYD rs291593 allele T; neutropenia risk was correlated with accumulation of genetic variants of DPYD rs291583 allele G, ABCB1 rs17064 AT, and positive HER2 status. Risk of nephrotoxicity was determined by homozygote DPYD rs291593, homozygote AKR1C3 rs3209896, postmenopausal age, and negative ER status. Increased risk of hepatotoxicity was connected with NR1/2 rs3732359 allele G, postmenopausal age, and with present metastases. The risk of nausea and vomiting was linked to several genetic factors and premenopausal age. We concluded that chemotherapy tolerance emerges from the simultaneous interaction of many genetic and clinical factors. Full article
(This article belongs to the Section Molecular Biology)
25 pages, 8187 KiB  
Article
Climate Response and Radial Growth Dynamics of Pedunculate Oak (Quercus robur L.) Plus Trees and Their Half-Sib Progeny in Periods of Severe Droughts in the Forest-Steppe Zone of Eastern Europe
by Daria A. Litovchenko, Anna A. Popova, Konstantin A. Shestibratov and Konstantin V. Krutovsky
Plants 2024, 13(22), 3213; https://doi.org/10.3390/plants13223213 - 15 Nov 2024
Viewed by 240
Abstract
The dendrochronological parameters of 97 pedunculate oak (Quercus robur L.) trees including 20 plus trees (142-year-old on average) and four half-sib families for four of them were analyzed considering also specifically years of the most severe droughts that were identified using average [...] Read more.
The dendrochronological parameters of 97 pedunculate oak (Quercus robur L.) trees including 20 plus trees (142-year-old on average) and four half-sib families for four of them were analyzed considering also specifically years of the most severe droughts that were identified using average monthly air temperature and precipitation data. The tree-ring width (TRW) was mostly affected by air temperature that had the largest cross-dating indices (CDI), up to 78% maximum. However, the 32-year Brückner–Egeson–Lockyer cycle (a climatic cycle of approximately 30–40 years that correlates with sunspot activity) was more reflected in the TRW dynamics in plus trees than precipitation and air temperature. A high-frequency of abnormal TRW was clearly observed during drought periods and in the following 2–3 years. Tree radial-growth reduction due to drought stress varied significantly between families. The resistance to drought based on TRW was higher in the maternal plus oak trees than in progeny. Drought resulted in reduced growth during the subsequent year(s); hence, the minimum growth occurred after the actual climate event. Autumn–winter precipitation and weather conditions were of the greatest importance at the onset of active vegetation in April and May. The influence of air temperature on oak growth was the largest in March (r = 0.39, p < 0.05). The strongest positive correlation between precipitation and growth (with r up to 0.38) was observed in May 2023. Plus trees had a high adaptive potential due to the stability of radial growth during drought with high resistance (Rt = 1.29) and resilience (Rs = 1.09) indexes. The offspring of families 1 (Rt = 0.89, Rs = 0.89) and 2 (Rt = 1.04, Rs = 0.87) had similar resistance and resilience, but the recovery indices (Rc) for offspring in families 1, 2 and 3 exceeded the recovery values for plus trees. For offspring in families 3 and 4, the index values were lower. The revealed responses of wood growth of plus trees to climatic parameters estimated as resistance (Rt), resilience (Rs) and recovery (Rc) indexes and similar responses in their progeny can be used in breeding pedunculate oak for wood growth productivity and drought resistance. Full article
Show Figures

Figure 1

20 pages, 3991 KiB  
Article
Chemical Landscape of Adipocytes Derived from 3T3-L1 Cells Investigated by Fourier Transform Infrared and Raman Spectroscopies
by Karolina Augustyniak, Monika Lesniak, Maciej P. Golan, Hubert Latka, Katarzyna Wojtan, Robert Zdanowski, Jacek Z. Kubiak and Kamilla Malek
Int. J. Mol. Sci. 2024, 25(22), 12274; https://doi.org/10.3390/ijms252212274 (registering DOI) - 15 Nov 2024
Viewed by 260
Abstract
Adipocytes derived from 3T3-L1 cells are a gold standard for analyses of adipogenesis processes and the metabolism of fat cells. A widely used histological and immunohistochemical staining and mass spectrometry lipidomics are mainly aimed for examining lipid droplets (LDs). Visualizing other cellular compartments [...] Read more.
Adipocytes derived from 3T3-L1 cells are a gold standard for analyses of adipogenesis processes and the metabolism of fat cells. A widely used histological and immunohistochemical staining and mass spectrometry lipidomics are mainly aimed for examining lipid droplets (LDs). Visualizing other cellular compartments contributing to the cellular machinery requires additional cell culturing for multiple labeling. Here, we present the localization of the intracellular structure of the 3T3-L1-derived adipocytes utilizing vibrational spectromicroscopy, which simultaneously illustrates the cellular compartments and provides chemical composition without extensive sample preparation and in the naïve state. Both vibrational spectra (FTIR—Fourier transform infrared and RS—Raman scattering spectroscopy) extended the gathered chemical information. We proved that both IR and RS spectra provide distinct chemical information about lipid content and their structure. Despite the expected presence of triacylglycerols and cholesteryl esters in lipid droplets, we also estimated the length and unsaturation degree of the fatty acid acyl chains that were congruent with known MS lipidomics of these cells. In addition, the clustering of spectral images revealed that the direct surroundings around LDs attributed to lipid-associated proteins and a high abundance of mitochondria. Finally, by using quantified markers of biomolecules, we showed that the fixative agents, paraformaldehyde and glutaraldehyde, affected the cellular compartment differently. We concluded that PFA preserves LDs better, while GA fixation is better for cytochromes and unsaturated lipid analysis. The proposed analysis of the spectral images constitutes a complementary tool for investigations into the structural and molecular features of fat cells. Full article
(This article belongs to the Special Issue Molecular Biology of Stem Cells)
Show Figures

Figure 1

11 pages, 1039 KiB  
Article
The C/C Genotype of rs1231760 in RGS2 Is a Risk Factor for the Progression of H. pylori-Positive Atrophic Gastritis by Increasing RGS2 Expression
by Naoyuki Yamaguchi, Takuki Sakaguchi, Jing-Jing Wei, Yuna Tazoe, Tatsuo Inamine, Daisuke Fukuda, Ken Ohnita, Tatsuro Hirayama, Hajime Isomoto, Kayoko Matsushima and Kazuhiro Tsukamoto
Diagnostics 2024, 14(22), 2563; https://doi.org/10.3390/diagnostics14222563 - 15 Nov 2024
Viewed by 266
Abstract
Background: Chronic gastritis caused by Helicobacter pylori (H. pylori) infection can progress to gastric cancer through atrophic gastritis (AG). The risk of gastric cancer increases with the progression of AG. Therefore, investigating the risk factors for the progression of AG is [...] Read more.
Background: Chronic gastritis caused by Helicobacter pylori (H. pylori) infection can progress to gastric cancer through atrophic gastritis (AG). The risk of gastric cancer increases with the progression of AG. Therefore, investigating the risk factors for the progression of AG is important. Methods: Using the GTEx and GEO databases, we extracted thirty-four candidate genes involved in the progression of AG. Then, with in silico analysis using HaploReg v4.1 and JASPAR (Matrix ID: MA0113.3), we extracted rs1231760 of RGS2 as a key single-nucleotide polymorphism (SNP) that could be involved in the functional change in the candidate gene. A correlation analysis between the selected SNP and AG in 200 H. pylori-positive and 302 H. pylori-negative participants was conducted. For functional analysis of the SNP, a dual-luciferase assay using reporter plasmids with a major or minor allele sequence was carried out. Results: The frequency of the C/C genotype of rs1231760 was higher in the AG group than in the non-AG group (p = 0.0471). Functional analysis showed that the transcriptional activities were higher at the dexamethasone-stimulating C allele than at the others (p < 0.05). Conclusions: The C/C genotype of rs1231760 in RGS2 could be a biomarker of high-risk H. pylori-positive AG because of an increase in RGS2 expression. Full article
(This article belongs to the Section Pathology and Molecular Diagnostics)
Show Figures

Figure 1

Back to TopTop