Search Results (254)

This research explores how the availability of substrates affects the regulation of soil microbial communities and the taxonomical composition of bacteria. The goal is to understand the impact of organic matter and substrate availability and quality on the diversity of soil bacteria. The study observed gradual changes in bacterial diversity in response to the addition of different substrate-induced respiration (SIR) substrates. Understanding the structure, dynamics, and functions of soil microbial communities is essential for assessing soil quality in sustainable agriculture. The preference for carbon sources among bacterial phyla is largely influenced by their life history and trophic strategies. Bacterial phyla like Proteobacteria, Bacteroidetes, and Actinobacteria, which thrive in nutrient-rich environments, preferentially utilize glucose. On the other hand, oligotrophic bacterial phyla such as Acidobacteria or Chloroflexi, which are found in lower numbers, have a lower ability to utilize labile C. The main difference between the two lies in their substrate utilization strategies. Understanding these distinct strategies is crucial for uncovering the bacterial functional traits involved in soil organic carbon turnover. Additionally, adding organic matter can promote the growth of copiotrophic bacteria, thus enhancing soil fertility. Full article

Acute lung Injury leads to alterations in surfactant lipid composition and metabolism. Although several mechanisms contribute to dysregulated surfactant metabolism, studies investigating in vivo surfactant metabolism are limited. The aim of this study is to characterise surfactant phospholipid composition and flux utilising a stable isotope labelling technique in mechanically ventilated paediatric patients. Paediatric patients (<16 years of age) received 3.6 mg/kg intravenous methyl-D₉-choline chloride followed by the endotracheal instillation of 100 mg/kg of exogenous surfactant after 24 h. Bronchioalveolar fluid samples were taken at baseline and 12, 24, 36, 48, 72 and 96 h after methyl-D₉-choline infusion. Nine participants (median age of 48 days) were recruited. The primary phosphatidylcholine (PC) composition consisted of PC16:0/16:0 or DPPC (32.0 ± 4.5%). Surfactant supplementation resulted in a 30% increase in DPPC. Methyl-D₉ PC enrichment was detected after 12 h and differed significantly between patients, suggesting variability in surfactant synthesis/secretion by the CDP-choline pathway. Peak enrichment was achieved (0.94 ± 0.15% of total PC) at 24 h after methyl-D₉-choline infusion. There was a trend towards reduced enrichment with the duration of mechanical ventilation prior to study recruitment; however, this was not statistically significant (p = 0.19). In this study, we demonstrated the fractional molecular composition and turnover of surfactant phospholipids, which was highly variable between patients. Full article

Invasive plants have already been observed in the understory of mountain forests, which are often considered a safe shelter for most native plants. Microorganisms might be drivers of plant invasions. Nevertheless, the mechanisms determining variations in microbial community composition (beta diversity) during invasion along altitudinal gradients remain to be elucidated. Here, the elevational patterns and the driving ecological processes (e.g., environmental filtering, co-occurrence patterns, and community assembly processes) of soil bacterial beta diversity were compared between invasive and native plants on the Qinling Mountains. The species turnover dominated bacterial compositional dissimilarities in both invasive and native communities, and its contribution to total beta diversity decreased during invasion. Total soil bacterial dissimilarities and turnover exhibited significant binominal patterns over an altitudinal gradient, with a tipping point of 1413 m. Further analysis showed that the contributions of assembly processes decreased in parallel with an increase in contributions of co-occurrence patterns during the invasion process, indicating that species interdependence rather than niche partitioning is strongly correlated with the bacterial biogeography of invasive communities. Plant invasion affects the relative contributions of stochastic processes and co-occurrence interactions through the regulation of the physiochemical characteristics of soil, and ultimately determines compositional dissimilarities and the components of the bacterial community along altitudinal gradients. Full article

Habitat disturbance driven by human activities poses a major threat to biodiversity and can disrupt ecological interactions. Butterfly–plant mutualisms represent an ideal model system to study such anthropogenic impacts, as butterflies exhibit intimate dependencies on larval host plants and adult nectar sources, rendering them highly sensitive to habitat changes affecting the availability of these floral resources. This study examined flower-visiting butterfly communities and their associations with flowering plants in a landscape altered by anthropogenic factors in central Mexico. The study area encompassed a mosaic of vegetation types, including native juniper forests, agricultural lands, and introduced eucalyptus plantations, representing different degrees of human-induced habitat modification. Monthly surveys were conducted over a single year, covering both rainy and dry seasons, to analyze butterfly and plant diversity, community composition, and interactions. Results showed the highest diversity in juniper forests, followed by eucalyptus and agricultural sites. Seasonal turnover was the primary driver of community changes, with habitat-based segregation persisting within seasons. Butterfly diversity strongly correlated with flower abundance, while plant richness played a secondary role. SIMPER and indicator species analyses identified key taxa contributing to compositional dissimilarities among habitats and associated with specific vegetation types and seasons. Our research provides insights into temporal dynamics structuring butterfly–plant interactions across this forest disturbance spectrum, highlighting how habitat changes and seasonality shape these mutualistic communities in changing landscapes. Full article

The Pinus halepensis (Aleppo pine) forests prevailing in the western part of the Mediterranean Basin are amongst the most severely affected by fire due to their inherent flammability. Our understanding of the environmental factors driving post-fire community dynamics is currently limited by the lack of time-series data at temporal scales. In this present study, we analyzed a chronosequence of Greek Aleppo pine forests spanning a post-fire period of 65 years. Our goal is to explore the role of post-fire age, altitude, exposure, slope level, parent-rock material, rock cover, and cover of evergreen sclerophyllous shrubs (maquis) on plant assemblage diversity (species richness and Menhinick’s diversity index) and composition. Post-fire age had a significant effect on taxonomic distinctness and community turnover but not on species richness. Taxonomic distinctness increased with post-fire age due to a higher prevalence of the families Fabaceae, Asteraceae, and Poaceae during the early post-fire period. Maquis cover was significantly associated with Menhinick’s diversity index, taxonomic distinctness, and community turnover. Exposure and slope influenced only Menhinick’s diversity index. The turnover in species composition was primarily driven by the geographical proximity of the forests and secondarily by post-fire age and the maquis cover. This highlights the importance of the initial floristic composition in the process of autosuccession after a fire in Mediterranean-climate ecosystems. Full article

Mollusca first evolve primitive immune cells (namely, haemocytes), which assemble a notable complex innate immune system, which are continuously produced through proliferation and differentiation and infused in the haemolymph. As a typical E3 ligase, CHIP is critical for immune cell turnover and homeostasis in vertebrates. In this study, a CHIP homolog (CgCHIP) with a high expression in haemocytes was identified in oysters to investigate its role in the proliferation and differentiation of ancient innate immune cells. CgCHIP exhibited a widespread distribution across all haemocyte subpopulations, and the knockdown of CgCHIP altered the composition of haemocytes as examined by flow cytometry. Mechanistically screened with bioinformatics and immunoprecipitation, a key haematopoietic transcription factor CgRunx was identified as a substrate of CgCHIP. Moreover, amino acids in the interacted intervals of CgCHIP and CgRunx were determined by molecular docking. Experimental evidence from an in vitro culture model of an agranulocyte subpopulation and an in vivo oyster model revealed that the knockdown of CgCHIP and CgRunx had opposing effects on agranulocyte (precursor cells) differentiation and granulocyte (effector cells) proliferation. In summary, CgCHIP negatively regulated agranulocyte differentiation and granulocyte proliferation by mediating the ubiquitination and degradation of CgRunx in oysters. These results offer insight into the involvement of ubiquitylation in controlling haemocyte turnover in primitive invertebrates. Full article

Soil bacteria, the predominant microbiota in soil, are subject to the law of minimum and the law of tolerance, but the assembly patterns of soil bacteria in response to environmental factors remain far from clear. Here, we took advantage of an altitudinal gradient (1020–1770 asl) in oak-dominant forests and assessed whether soil bacteria linearly or nonlinearly respond to environmental properties through the changes in the community diversity and composition. We found that soil bacteria decreased with increasing altitude in terms of the species richness and phylogenetic structure, while they were unchanged with increasing altitude in terms of community composition. The species richness was nonlinearly affected by the soil pH (19.9%), C:N ratio (14.3%), SOC (11.4%), and silt + clay content (9.9%). Specifically, the species richness peaked at a pH of 5.5–6.5, and an SOC of 25–50 g kg⁻¹, and it showed abrupt decreases and increases at a C:N ratio of 14.5 and a silt + clay content of 70%. The community composition was significantly affected by the soil pH (28.2%), then by the SOC (3.6%), available phosphorus (1.0%), and silt + clay content (0.5%), and it showed less turnovers at a pH of 6.0, SOC of 50 g kg⁻¹, and available phosphorus > 3.0 g kg⁻¹. These findings imply that environmental filtering processes nonlinearly shape bacterial communities. Full article

Studying the interaction between pesticide contamination in the plant system and the dissolved organic matter (DOM) composition is important to understand the impact of pesticides and plants on the ecological function of DOM. The present study investigated the effects of DOM on the bioaccumulation and biotransformation of carbamates in plants, carbamate exposure on DOM composition, and plant root secretion on the interaction between DOM and carbamates. The concentrations of carbamates and their metabolites in living cabbage plants were continuously tracked through an in vivo analytical method. The presence of DOM was found to reduce the highest bioconcentrations and shorten the time it took to reach the highest bioaccumulated amounts of isoprocarb and carbofuran in plants, while it showed no significant effect on the uptake behavior of carbaryl. DOM profiling results indicated that carbamate exposure substantially decreased the number and molecular diversity of DOM. Notably, plant root secretion alleviated carbamate-induced DOM molecular alterations by inducing a higher turnover rate of DOM compared to that in the uncontaminated group, highlighting the role of plants in mitigating the effects of exogenous pesticide exposure on DOM composition and maintaining DOM molecular homeostasis. Full article

Microbes may play an important role in the sugarcane leaf degradation and nutrient conversion process. Soil bacterial communities are more or less involved in material transformation and nutrient turnover. In order to make better use of the vast sugarcane leaf straw resources and reduce the overuse of chemical fertilizers in the subtropical red soil region of Guangxi, a pot experiment, with three sugarcane leaf return (SLR) amounts [full SLR (FS), 120 g/pot; half SLR (HS), 60 g/pot; and no SLR (NS)] and three fertilizer reduction (FR) levels [full fertilizer (FF), 4.50 g N/pot, 3.00 g P₂O₅/pot, and 4.50 g K₂O/pot; half fertilizer (HF), 2.25 g N/pot, 1.50 g P₂O₅/pot, and 2.25 g K₂O/pot; and no fertilizer (NF)], was conducted to assess the interactions of different SLR amounts and chemical FR levels in the soil bacterial network and the relationship between the soil properties and bacterial network by using Illumina Miseq high-throughput sequencing technology. According to the results of the soil bacterial community compositions and diversity, the soil bacterial network was changed during maize growth. SLR exerted a stronger effect on soil bacterial function than FR. Returning the sugarcane leaf to the field increased the diversity of the soil bacteria network. The bacterial communities were consistently dominated by Acidobacteria, Actinobacteria, and Bacteroidetes across all treatments, among which Actinobacteria was the most abundant bacteria type by almost 50% at the phylum level. The analysis results of the experimental factor on maize growth showed that the effect of SLR was lower than that of FR; however, this was opposite in the soil bacterial community structure and diversity. The soil bacterial network was significantly correlated with the soil total K, available N and organic matter contents, and EC. The soil bacteria community showed different responses to SLR and FR, and the FF in combination with FS partly increased the complexity of the soil bacteria network, which can further benefit crop production and soil health in the red soil region. Full article

Natural products of bee origin, despite their complex composition and difficulties in standardization, have been of high interest among scientists representing various disciplines from basic sciences to industrial and practical implementation. As long as their use is monitored and they do not impact human health, they can be considered valuable sources of many chemical compounds and are potentially useful in medicine, food processing, nutrition, etc. However, apart from honey, the general turnover of bee products lacks precise and detailed legal requirements ensuring their quality. The different residues in these products constitute a problem, which has been reported in numerous studies. All products derived from beekeeping are made by bees, but they are also influenced by the environment. Such a dual pathway requires detailed surveillance of hazards stemming from outside and inside the apiary. This should be ensured via harmonized requirements arising from the binding legal acts, especially in international and intercontinental trade zones. Full article

Topical ocular drug delivery faces several challenges due to the eye’s unique anatomy and physiology. Physiological barriers, tear turnover, and blinking hinder the penetration of drugs through the ocular mucosa. In this context, nanoparticles offer several advantages over traditional eye drops. Notably, they can improve drug solubility and bioavailability, allow for controlled and sustained drug release, and can be designed to specifically target ocular tissues, thus minimizing systemic exposure. This study successfully designed and optimized PLGA and PCL nanoparticles for delivering baricitinib (BTB) to the eye using a factorial design, specifically a three-factor at five-levels central rotatable composite 2³⁺ star design. The nanoparticles were small in size so that they would not cause discomfort when applied to the eye. They exhibited low polydispersity, had a negative surface charge, and showed high entrapment efficiency in most of the optimized formulations. The Challenge Test assessed the microbiological safety of the nanoparticle formulations. An ex vivo permeation study through porcine cornea demonstrated that the nanoparticles enhanced the permeability coefficient of the drug more than 15-fold compared to a plain solution, resulting in drug retention in the tissue and providing a depot effect. Finally, the in vitro ocular tolerance studies showed no signs of irritancy, which was further confirmed by HET-CAM testing. Full article

The environmental filtering hypothesis predicts that abiotic factors restrict communities by selecting species capable of survival and persistence under specific conditions, resulting in variations in beta diversity, phylogenetic clustering, and niche differentiation among communities when studying environmental gradients. Cushion bogs and high-altitude wetlands along the Andes display homogeneous flora contrasting with zonal vegetation. Despite being influenced by microclimatic conditions, these ecosystems are subject to diverse environmental effects. Here, we test the environmental filtering hypothesis on the structure of cushion bog communities along a broad-scale latitudinal gradient from 15° S to 42° S. We analyzed 421 bogs and 293 species across three macroclimatic regions with distinct summer, winter, and transitional arid rainfall regimes. Using variance partitioning and membership-based regionalization models, we examined the impacts of climatic, edaphic, and spatial variables on beta diversity. We also assessed species’ niche overlap and the influence of environmental filters on the communities’ phylogenetic diversity. Results show that species turnover and niche overlap vary with macroclimatic differences, delineating three distinct regions. Notably, phylogenetic clustering in the driest part of the gradient (23° S–24° S) highlights the impact of environmental filtering. Aridity and temperature variations at a broad scale serve as environmental filters shaping the composition of bog communities across southern South America. Full article

The accurate estimation of basal endogenous losses (BEL) of amino acids at the ileum is indispensable to improve nutrient utilization efficiency. This study used a quantitative proteomic approach to identify variations in BEL in the ileal digesta of growing pigs fed a nitrogen-free diet (NFD) or a casein diet (CAS). Eight barrow pigs (39.8 ± 6.3 kg initial body weight (BW)) were randomly assigned to a 2 × 2 crossover design. A total of 348 proteins were identified and quantified in both treatments, of which 101 showed a significant differential abundance between the treatments (p < 0.05). Functional and pathway enrichment analyses revealed that the endogenous proteins were associated with intestinal metabolic function. Furthermore, differentially abundant proteins (DAPs) in the digesta of pigs fed the NFD enriched terms and pathways that suggest intestinal inflammation, the activation of innate antimicrobial host defense, an increase in cellular autophagy and epithelial turnover, and reduced synthesis of pancreatic and intestinal secretions. These findings suggest that casein diets may provide a more accurate estimation of BEL because they promote normal gastrointestinal secretions. Overall, proteomic and bioinformatic analyses provided valuable insights into the composition of endogenous proteins in the ileal digesta and their relationship with the functions, processes, and pathways modified by diet composition. Full article

Phosphorus (P) is an important and irreplaceable macronutrient. It is central to energy and information storage and exchange in living cells. P is an element with a “broken geochemical cycle” since it lacks abundant volatile compounds capable of closing the P cycle. P fertilizers are critical for global food security, but the reserves of minable P are scarce and non-evenly distributed between countries of the world. Accordingly, the risks of global crisis due to limited access to P reserves are expected to be graver than those entailed by competition for fossil hydrocarbons. Paradoxically, despite the scarcity and value of P reserves, its usage is extremely inefficient: the current waste rate reaches 80% giving rise to a plethora of unwanted consequences such as eutrophication leading to harmful algal blooms. Microalgal biotechnology is a promising solution to tackle this challenge. The proposed review briefly presents the relevant aspects of microalgal P metabolism such as cell P reserve composition and turnover, and the regulation of P uptake kinetics for maximization of P uptake efficiency with a focus on novel knowledge. The multifaceted role of polyPhosphates, the largest cell depot for P, is discussed with emphasis on the P toxicity mediated by short-chain polyPhosphates. Opportunities and hurdles of P bioremoval via P uptake from waste streams with microalgal cultures, either suspended or immobilized, are discussed. Possible avenues of P-rich microalgal biomass such as biofertilizer production or extraction of valuable polyPhosphates and other bioproducts are considered. The review concludes with a comprehensive assessment of the current potential of microalgal biotechnology for ensuring the sustainable usage of phosphorus. Full article

Diabetes mellitus (DM) poses a significant challenge to global health, with its prevalence projected to rise dramatically by 2045. This narrative review explores the bidirectional relationship between periodontitis (PD) and type 1 diabetes mellitus (T1DM), focusing on cellular and molecular mechanisms derived from the interplay between oral microbiota and the host immune response. A comprehensive search of studies published between 2008 and 2023 was conducted to elucidate the association between these two diseases. Preclinical and clinical evidence suggests a bidirectional relationship, with individuals with T1DM exhibiting heightened susceptibility to periodontitis, and vice versa. The review includes recent findings from human clinical studies, revealing variations in oral microbiota composition in T1DM patients, including increases in certain pathogenic species such as Porphyromonas gingivalis, Prevotella intermedia, and Aggregatibacter actinomycetemcomitans, along with shifts in microbial diversity and abundance. Molecular mechanisms underlying this association involve oxidative stress and dysregulated host immune responses, mediated by inflammatory cytokines such as IL-6, IL-8, and MMPs. Furthermore, disruptions in bone turnover markers, such as RANKL and OPG, contribute to periodontal complications in T1DM patients. While preventive measures to manage periodontal complications in T1DM patients may improve overall health outcomes, further research is needed to understand the intricate interactions between oral microbiota, host response, periodontal disease, and systemic health in this population. Full article