Probing the structure of RNAs in solution (Q38181797)

30 August 2017

1 reference

title

Probing the structure of RNAs in solution (English)

1 reference

30 August 2017

Ehresmann C

1

1 reference

30 August 2017

Baudin F

2

1 reference

30 August 2017

Mougel M

3

1 reference

30 August 2017

Romby P

4

1 reference

30 August 2017

Ebel JP

5

1 reference

30 August 2017

Ehresmann B

6

1 reference

30 August 2017

language of work or name

English

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publication date

1 November 1987

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30 August 2017

Nucleic Acids Research

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30 August 2017

15

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30 August 2017

22

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30 August 2017

9109-9128

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The reaction of mono- and di-functional alkylating agents with nucleic acids

30 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306456

The tRNA-like structure of turnip yellow mosaic virus RNA: structural organization of the last 159 nucleotides from the 3' OH terminus.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306456

Crystal structure analysis of a complete turn of B-DNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306456

The tRNA-like structure at the 3' terminus of turnip yellow mosaic virus RNA. Differences and similarities with canonical tRNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306456

A "bulged" double helix in a RNA-protein contact site.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306456

Mapping tRNA structure in solution using double-strand-specific ribonuclease V1 from cobra venom

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306456

Partial digestion of tRNA--aminoacyl-tRNA synthetase complexes with cobra venom ribonuclease.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306456

RNA splicing: Three themes with variations

6 September 2017

1 reference

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Crystallization of a tRNA . aminoacyl-tRNA synthetase complex. Characterization and first crystallographic data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306456

Self-splicing RNA: Autoexcision and autocyclization of the ribosomal RNA intervening sequence of tetrahymena

6 September 2017

1 reference

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Secondary structure of Bombyx mori and Dictyostelium discoideum 5S rRNA from S1 nuclease and cobra venom ribonuclease susceptibility, and computer assisted analysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306456

Secondary structure model for the complete simian virus 50 late precursor mRNA

6 September 2017

1 reference

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RNA structure analysis using methidiumpropyl-EDTA.Fe(II): a base-pair-specific RNA structure probe

6 September 2017

1 reference

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Interactions between avian myeloblastosis reverse transcriptase and tRNATrp. Mapping of complexed tRNA with chemicals and nucleases

6 September 2017

1 reference

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The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme

6 September 2017

1 reference

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Three-dimensional structural model of eubacterial 5S RNA that has functional implications

6 September 2017

1 reference

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The conformation of chicken, rat and human U1A RNAs in solution

6 September 2017

1 reference

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Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

6 September 2017

1 reference

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Chemical probes for higher-order structure in RNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306456

The reaction of guanine derivatives with 1,2-dicarbonyl compounds

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306456

Self-splicing RNA: implications for evolution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306456

Localization of the binding site for protein S4 on 16 S ribosomal RNA by chemical and enzymatic probing and primer extension

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306456

Xenopus transcription factor IIIA binds primarily at junctions between double helical stems and internal loops in oocyte 5S RNA.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306456

Interaction of antibiotics with functional sites in 16S ribosomal RNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306456

Secondary structure of the circular form of the Tetrahymena rRNA intervening sequence: a technique for RNA structure analysis using chemical probes and reverse transcriptase

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306456

On the recognition of helical RNA by cobra venom V1 nuclease.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306456

Characterization of the RNA binding properties of transcription factor IIIA of Xenopus laevis oocytes

6 September 2017

1 reference

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Hydrogen bonding in yeast phenylalanine transfer RNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306456

All oxygens in nucleic acids react with carcinogenic ethylating agents

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306456

Mapping adenines, guanines, and pyrimidines in RNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306456

Direct chemical method for sequencing RNA

6 September 2017

1 reference

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Crystal structure of yeast phenylalanine transfer RNA. I. Crystallographic refinement

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306456

Structural analysis of spermine and magnesium ion binding to yeast phenylalanine transfer RNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306456

RNA - ligand interactions:(I) magnesium binding sites in yeast tRNAPhe

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306456

DNA sequencing with chain-terminating inhibitors

6 September 2017

1 reference

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A new method for sequencing DNA

6 September 2017

1 reference

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The use of nuclease P1in sequence analysis of end group labeled RNA

6 September 2017

1 reference

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Specificity of different classes of ethylating agents toward various sites in RNA

6 September 2017

1 reference

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Sites of alkylation of poly(U) by agents of varying carcinogenicity and stability of products

6 September 2017

1 reference

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Bisulfite Modification of Nucleic Acids and their Constituents

6 September 2017

1 reference

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Diethyl Pyrocarbonate in Nucleic Acid Research

6 September 2017

1 reference

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Conformational changes of yeast tRNAPhe and E. coli tRNA2Glu as indicated by different nuclease digestion patterns

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306456

The Structure of Ribosomal RNA and Its Organization Relative to Ribosomal Protein

14 September 2017

1 reference

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Comparative structural analysis of cytoplasmic and chloroplastic 5S rRNA from spinach

14 September 2017

1 reference

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RNA structure analysis using T2 ribonuclease: detection of pH and metal ion induced conformational changes in yeast tRNAPhe

14 September 2017

1 reference

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Improved methods for structure probing in large RNAs: a rapid ‘heterologous’ sequencing approach is coupled to the direct mapping of nudease accessible sites. Application to the 5′nal domain of eukaryotic 28S rRNA

14 September 2017

1 reference

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Comparative anatomy of 16-S-like ribosomal RNA.

14 September 2017

1 reference

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Evolutionary changes in the higher order structure of the ribosomal 5S RNA.

14 September 2017

1 reference

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Conformation of yeast 18S rRNA. Direct chemical probing of the 5' domain in ribosomal subunits and in deproteinized RNA by reverse transcriptase mapping of dimethyl sulfate-accessible.

14 September 2017

1 reference

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Isolation of highly purified ribonuclease from cobra (Naja oxiana) venom

14 September 2017

1 reference

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End group labelling of RNA and double stranded DNA by phosphate exchange catalyzed by bacteriophage T4 induced polynucleotide kinase

14 September 2017

1 reference

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Inhibition of a nuclease contaminant in the commercial preparations of escherichia coli alkaline phosphatase

14 September 2017

1 reference

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Yeast transfer RNAAsp: A new high-resolution X-ray diffracting crystal form of a transfer RNA

28 September 2017

1 reference

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A crystallographic study of metal-binding to yeast phenylalanine transfer RNA

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306456

3-D graphics modelling of the tRNA-like 3'-end of turnip yellow mosaic virus RNA: structural and functional implications

28 September 2017

1 reference

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A model for the tertiary structure of mammalian mitochondrial transfer RNAs lacking the entire 'dihydrouridine' loop and stem

28 September 2017

1 reference

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23 June 2018

Specificity of RNase U2.

1 reference

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Studies on tRNA Nucleotidyltransferase from Baker's Yeast. 1. Purification of the Enzyme. Protection against Thermal Inactivation and Inhibition by Several Substrates

23 June 2018

1 reference

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Detection of high-affinity intercalator sites in a ribosomal RNA fragment by the affinity cleavage intercalator methidiumpropyl-EDTA-iron(II).

23 June 2018

1 reference

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RNA structural dynamics: pre-melting and melting transitions in E. coli 5S rRNA.

23 June 2018

1 reference

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Secondary structure of a 345-base RNA fragment covering the S8/S15 protein binding domain of Escherichia coli 16S ribosomal RNA.

23 June 2018

1 reference

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The RNA required in the first step of chlorophyll biosynthesis is a chloroplast glutamate tRNA.

23 June 2018

1 reference

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Comparison of the tertiary structure of yeast tRNA(Asp) and tRNA(Phe) in solution. Chemical modification study of the bases

23 June 2018

1 reference

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Unusual priming mechanism of RNA-directed DNA synthesis in copia retrovirus-like particles of Drosophila.

23 June 2018

1 reference

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Reaction of DNA with alkylating agents. Quantitation of alkylation by ethylnitrosourea of oxygen and nitrogen sites on poly[dA-dT] including phosphotriester formation

23 June 2018

1 reference

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EFFECTS OF ALKYLATING AGENTS ON T2 AND T4 BACTERIOPHAGES

23 June 2018

1 reference

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A nuclease specific for heat-denatured DNA in isolated from a product of Aspergillus oryzae.

31 August 2018

1 reference

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DNA primase of human mitochondria is associated with structural RNA that is essential for enzymatic activity

31 August 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Specific inhibition by ATP and other properties of an endonuclease of Neurospora crassa

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Tertiary structure of tRNAs in solution monitored by phosphodiester modification with ethylnitrosourea

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Crystallographic refinement of yeast phenylalanine transfer RNA at 2-5A resolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Tertiary structure of the eukaryotic ribosomal 5 S RNA. Accessibility of phosphodiester bonds to ethylnitrosourea modification

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Molecular weight distribution of hydrolysis products of polyuridylic acid by cobra venom ribonuclease. Preparation of polynucleotides of required molecular weight

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Tertiary structure interactions of 7-methylguanosine in yeast tRNA Phe as studied by borohydride reduction

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Reaction of guanine with glyoxal, pyruvaldehyde, and kethoxal, and the structure of the acylguanines. Synthesis of N2-alkylguanines

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Comparison of transfer ribonucleic acid structures using cobra venom and S1 endonucleases

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

A new theoretical index of biochemical reactivity combining steric and electrostatic factors. An application to yeast tRNAPhe

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Identification of a cytidine-specific ribonuclease from chicken liver

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Ribonuclease T1 catalyzed degradation of transfer RNA: an unusual alteration induced by urea

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

A theoretical study of the effect of structural variations on the biochemical reactivity of yeast tRNAPhe and yeast tRNAAsp

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Reaction of diethyl pyrocarbonate with nucleic acid components. Adenosine

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Crystallographic refinement of yeast aspartic acid transfer RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Three-dimensional structure of Escherichia coli initiator tRNAfMet

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Yeast tRNAAsp tertiary structure in solution and areas of interaction of the tRNA with aspartyl-tRNA synthetase. A comparative study of the yeast phenylalanine system by phosphate alkylation experiments with ethylnitrosourea

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Cleavage of DNA with methidiumpropyl-EDTA-iron(II): reaction conditions and product analyses

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

The purification and properties of chicken liver RNase: An enzyme which is useful in distinguishing between cytidylic and uridylic acid residues

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Tertiary structure of animal tRNATrp in solution and interaction of tRNATrp with tryptophanyl-tRNA synthetase

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Rapid chemical probing of conformation in 16 S ribosomal RNA and 30 S ribosomal subunits using primer extension

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Heterogeneous nuclear ribonucleoproteins: role in RNA splicing

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Selective chemical modifications of uridine and pseudouridine in polynucleotides and their effect on the specificities of ribonuclease and phosphodiesterases

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Studies on anticodon-anticodon interactions: hemi-protonation of cytosines induces self-pairing through the GCC anticodon of E. coli tRNA-Gly

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Reaction of diethyl pyrocarbonate with nucleic acid components. Bases and nucleosides derived from guanine, cytosine, and uracil

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

AN ENDONUCLEASE FROM NEUROSPORA CRASSA SPECIFIC FOR POLYNUCLEOTIDES LACKING AN ORDERED STRUCTURE. II. STUDIES OF ENZYME SPECIFICITY

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Crystal structure of yeast tRNAAsp: atomic coordinates

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Comparison of the hydrolysis patterns of several tRNAs by cobra venom ribonuclease in different steps of the aminoacylation reaction

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Interaction of tRNAPhe and tRNAVal with aminoacyl-tRNA synthetases. A chemical modification study

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Chemical probing of conformation in large RNA molecules. Analysis of 16 S ribosomal RNA using diethylpyrocarbonate

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Specific protein-nucleic acid recognition in ribonuclease T1–2′-guanylic acid complex: an X-ray study

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Structure of eukaryotic 5S ribonucleic acid: a study of Saccharomyces cerevisiae 5S ribonucleic acid with ribonucleases

1 reference

https://pubmed.ncbi.nlm.nih.gov/2446263

12 December 2020

Identifiers

DOI

10.1093/NAR/15.22.9109

1 reference

30 August 2017

1 reference

30 August 2017

PubMed publication ID

2446263

1 reference