CANDID: a flexible method for prioritizing candidate genes for complex human traits. (Q35571604)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18613097%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

title

CANDID: a flexible method for prioritizing candidate genes for complex human traits (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18613097%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

1 reference

Aldi T Kraja

2

1 reference

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10 January 2020

Howard L McLeod

series ordinal

3

1 reference

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10 January 2020

publication date

1 December 2008

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10 January 2020

1 reference

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10 January 2020

volume

32

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10 January 2020

issue

8

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10 January 2020

page(s)

779-790

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Newly identified loci that influence lipid concentrations and risk of coronary artery disease

10 January 2020

cites work

1 reference

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A functional polymorphism in COL11A1, which encodes the alpha 1 chain of type XI collagen, is associated with susceptibility to lumbar disc herniation

27 July 2018

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Genetic determinants of hair, eye and skin pigmentation in Europeans

27 July 2018

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An LRP8 variant is associated with familial and premature coronary artery disease and myocardial infarction

27 July 2018

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TRAF1-C5 as a risk locus for rheumatoid arthritis--a genomewide study

27 July 2018

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A genetic risk factor for periodic limb movements in sleep

27 July 2018

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A genomewide screen for late-onset Alzheimer disease in a genetically isolated Dutch population

27 July 2018

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Genome-wide association study identifies novel breast cancer susceptibility loci

27 July 2018

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Update of the G2D tool for prioritization of gene candidates to inherited diseases

27 July 2018

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CHD7 gene polymorphisms are associated with susceptibility to idiopathic scoliosis.

27 July 2018

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Homozygous mutation of AURKC yields large-headed polyploid spermatozoa and causes male infertility.

27 July 2018

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Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis

27 July 2018

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Genetic analysis of 103 candidate genes for coronary artery disease and associated phenotypes in a founder population reveals a new association between endothelin-1 and high-density lipoprotein cholesterol

27 July 2018

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Population-based resequencing of ANGPTL4 uncovers variations that reduce triglycerides and increase HDL.

27 July 2018

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Functional SNP in an Sp1-binding site of AGTRL1 gene is associated with susceptibility to brain infarction

27 July 2018

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A large-scale genetic association study confirms IL12B and leads to the identification of IL23R as psoriasis-risk genes

27 July 2018

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A three-single-nucleotide polymorphism haplotype in intron 1 of OCA2 explains most human eye-color variation

27 July 2018

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The neuronal sortilin-related receptor SORL1 is genetically associated with Alzheimer disease

27 July 2018

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Mutations in the gene encoding the Sigma 2 subunit of the adaptor protein 1 complex, AP1S2, cause X-linked mental retardation

27 July 2018

1 reference

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CGI: a new approach for prioritizing genes by combining gene expression and protein-protein interaction data

27 July 2018

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A genome-wide association study identifies IL23R as an inflammatory bowel disease gene

27 July 2018

1 reference

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Common Kibra alleles are associated with human memory performance

27 July 2018

1 reference

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HTRA1 promoter polymorphism in wet age-related macular degeneration

27 July 2018

1 reference

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Haplotypes spanning SPEC2, PDZ-GEF2 and ACSL6 genes are associated with schizophrenia

27 July 2018

1 reference

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Analysis of protein sequence and interaction data for candidate disease gene prediction

27 July 2018

1 reference

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Heritable germline epimutation of MSH2 in a family with hereditary nonpolyposis colorectal cancer

27 July 2018

1 reference

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Microdeletion encompassing MAPT at chromosome 17q21.3 is associated with developmental delay and learning disability

27 July 2018

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TOM: a web-based integrated approach for identification of candidate disease genes

27 July 2018

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Gene prioritization through genomic data fusion

27 July 2018

1 reference

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Systematic identification of human mitochondrial disease genes through integrative genomics

27 July 2018

1 reference

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Sequence features in regions of weak and strong linkage disequilibrium

27 July 2018

1 reference

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GeneRank: using search engine technology for the analysis of microarray experiments

27 July 2018

1 reference

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An integrative genomics approach to infer causal associations between gene expression and disease

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420475

Speeding disease gene discovery by sequence based candidate prioritization

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420475

Genome-wide identification of genes likely to be involved in human genetic disease

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420475

A gene atlas of the mouse and human protein-encoding transcriptomes

27 July 2018

1 reference

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POCUS: mining genomic sequence annotation to predict disease genes

27 July 2018

1 reference

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A new web-based data mining tool for the identification of candidate genes for human genetic disorders

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420475

Identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics

27 July 2018

1 reference

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Merlin--rapid analysis of dense genetic maps using sparse gene flow trees

27 July 2018

1 reference

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Gene ontology: tool for the unification of biology

27 July 2018

1 reference

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Multipoint quantitative-trait linkage analysis in general pedigrees

27 July 2018

1 reference

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Parametric and nonparametric linkage analysis: a unified multipoint approach

27 July 2018

1 reference

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Evaluation of coverage variation of SNP chips for genome-wide association studies.

27 July 2018

1 reference

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A genomewide association study of skin pigmentation in a South Asian population

26 September 2018

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Replication of genome-wide association signals in UK samples reveals risk loci for type 2 diabetes

26 September 2018

1 reference

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A common variant in the FTO gene is associated with body mass index and predisposes to childhood and adult obesity

26 September 2018

1 reference

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A functional polymorphism in the 5' UTR of GDF5 is associated with susceptibility to osteoarthritis

26 September 2018

1 reference

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A genetic association study of chromosome 11q22-24 in two different samples implicates the FXYD6 gene, encoding phosphohippolin, in susceptibility to schizophrenia

26 September 2018

1 reference

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Genome-wide analysis of genetic alterations in acute lymphoblastic leukaemia

26 September 2018

1 reference

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A common haplotype of the annexin A5 (ANXA5) gene promoter is associated with recurrent pregnancy loss.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420475

A recurrent mutation in PALB2 in Finnish cancer families.

26 September 2018

1 reference

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Mutations in the gene encoding the synaptic scaffolding protein SHANK3 are associated with autism spectrum disorders

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420475

Novel genes identified in a high-density genome wide association study for nicotine dependence

26 September 2018

1 reference

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A functional polymorphism within plasminogen activator urokinase (PLAU) is associated with Alzheimer's disease.

26 September 2018

1 reference

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P2RX7, a gene coding for a purinergic ligand-gated ion channel, is associated with major depressive disorder

26 September 2018

1 reference

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Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420475

Predicting disease genes using protein-protein interactions.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420475

SUSPECTS: enabling fast and effective prioritization of positional candidates

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420475

Putting the 'bio' into bioinformatics

26 September 2018

1 reference

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G2D: a tool for mining genes associated with disease

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420475

A procedure for assessing GO annotation consistency

26 September 2018

1 reference

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Identifying a series of candidate genes for mania and psychosis: a convergent functional genomics approach

26 September 2018

1 reference

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Evidence for unique association signals in SLE at the CD28-CTLA4-ICOS locus in a family-based study

26 September 2018

1 reference

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A genome-wide association study shows that common alleles of SMAD7 influence colorectal cancer risk

15 November 2018

1 reference

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A common coding variant in CASP8 is associated with breast cancer risk

15 November 2018

1 reference

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Truncating mutations in the Fanconi anemia J gene BRIP1 are low-penetrance breast cancer susceptibility alleles

15 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420475

Variation in MICA and MICB genes and enhanced susceptibility to paucibacillary leprosy in South India

15 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420475

Evidence for involvement of the vitamin D receptor gene in idiopathic short stature via a genome-wide linkage study and subsequent association studies

15 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4420475

A nonsynonymous SNP in PRKCH (protein kinase C eta) increases the risk of cerebral infarction

15 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18613097

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A six-nucleotide insertion-deletion polymorphism in the CASP8 promoter is associated with susceptibility to multiple cancers

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18613097

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Gene functional similarity search tool (GFSST)

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18613097

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1002/GEPI.20346

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18613097%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18613097%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

PubMed publication ID

18613097

1 reference