Search Results (343)

This study investigated the occurrence and dynamics of oral Staphylococcus species in patients with orofacial clefts undergoing surgical rehabilitation treatment. Patients (n = 59) were statistically stratified and analyzed (age, gender, types of orofacial clefts, surgical history, and types of previous surgical rehabilitation). Salivary samples were obtained between hospitalization and the return to the specialized medical center. Microbiological diagnosis was performed by classical methods, and MALDI-TOF MS. MRSA strains (SCCmec type II, III, and IV) were characterized by the Decision Tree method. A total of 33 (55.9%) patients showed oral staphylococcal colonization in one, two, or three sampling steps. A high prevalence has been reported for S. aureus (including HA-, MRSA and CA-MRSA), followed by S. saprophyticus, S. epidermidis, S. sciuri, S. haemolyticus, S. lentus, S. arlettae, and S. warneri. The dynamics of oral colonization throughout surgical treatment and medical follow-up may be influenced by (i) imbalances in staphylococcal maintenance, (ii) efficiency of surgical asepsis or break of the aseptic chain, (iii) staphylococcal neocolonization in newly rehabilitated anatomical oral sites, and (iv) total or partial maintenance of staphylococcal species. The highly frequent clinical periodicity in specialized medical and dental centers may contribute to the acquisition of MRSA in these patients. Full article

In this study we focused on the need to fill a knowledge gap among Italian botanical studies namely that of ornamental species census. In particular, we addressed one of the regions in southern Italy with less knowledge in the field of such studies and with an obvious presence of non-native species. A widespread census of the Apulian territory was carried out between 2021 and 2024 in both urban and suburban areas including street trees, parks, and private and historic gardens. The inventory of ornamental trees, shrubs, and succulents of Apulia (southern Italy) was carried out in six provinces, i.e., Bari, Barletta-Andria-Trani, Brindisi, Foggia, Lecce, and Taranto. The checklist comprises 287 taxa (including 265 species, 6 varieties, 5 subspecies, and 11 forms) included in 179 genera belonging to 78 families. We evaluated the number of taxa per families and genera, the presence of each taxa in the provinces of Apulia, the number of taxa per occurrence status, growth forms, geographical origin, and the number of native and alien taxa and also the artificial hybrids. Remarks of the most significant taxa and evaluation of geographical distribution in Italy were also taken into consideration. A large number of surveyed taxa (51.74%) are comprised in the list reported in the recent study on allochthonous vascular flora in Italy with a marked prevalence of Neophyte Casual Alien and Neophyte Naturalized Alien species. Full article

In a long-term monoculture with fruit trees and tree nurseries, it is necessary to regenerate the soil due to the risk of apple replant disease (ARD). The occurrence of ARD is manifested in the structure of the mycobiome. The assumption of our experiment was that the use of oil radish (Raphanus sativus var. oleifera), white mustard (Sinapis alba), and marigold (Tagetes patula L.) as phytosanitary plants for biofumigation would provide crops with nutrients, improve soil physicochemical properties, and influence the diversity of microbiota, including fungal networks, towards a beneficial mycobiome. Metagenomic analysis of fungal populations based on the hypervariable ITS1 region was used for assessing changes in the soil mycobiome. It showed that biofumigation, mainly with a forecrop of marigold (Tagetes patula L.) (R3), caused an improvement in soil physicochemical properties (bulk density and humus) and the highest increase in the abundance of operational taxonomic units (OTUs) of the Fungi kingdom, which was similar to that of agriculturally undegraded soils, and amounted to 54.37%. In this variant of the experiment, the most OTUs were identified at the phylum level, for Ascomycota (39.82%) and Mortierellomycota beneficial fungi (7.73%). There were no such dependencies in the soils replanted with forecrops of oilseed radish (Raphanus sativus var. oleifera) and white mustard (Sinapis alba). Biofumigation with marigold and oil radish contributed to a reduction in the genus Fusarium, which contains several significant plant-pathogenic species. The percentages of operational taxonomic units (OTUs) of Fusarium spp. decreased from 1.57% to 0.17% and 0.47%, respectively. Full article

Our investigation centered on the tropical dry forests along the Pacific coast of Honduras, aiming to elucidate the presence and abundance of minuscule grey moths during the dry season. Through specimen dissections and the taxonomic identification of the collected material, we have described three new species: Acalyptris podenasi sp. nov., A. palpiformis sp. nov., and A. tortoris sp. nov. Additionally, we documented two species previously known from neighboring countries, A. lascuevella Puplesis & Robinson and A. basicornis Remeikis & Stonis. The females of A. lascuevella were previously unknown and are documented here for the first time. Morphological examinations were complemented by DNA barcoding, particularly highlighting variation in A. lascuevella. The paper’s primary significance lies not only in the description of new species but also in uncovering their taxonomic, morphological, and molecular importance. We found that these species are unique and indicative of the previously unstudied dry forests as a distinct ecosystem. Our findings revealed several novel atypical morphological traits within the studied Nepticulidae, including unusually large signum cells in the female genitalia, a dorso-ventrally divided uncus, and asymmetrical valvae in the male genitalia. These discoveries underscore the morphological diversity of Acalyptris Meyrick and their significance in evolutionary biology. Consequently, the paper addresses a previously unknown phenomenon of the occurrence and astonishing abundance of minuscule plant-mining micromoths in dry deciduous forests during the peak of the dry season. We hope that this paper will encourage Lepidoptera taxonomists to explore micromoths in other tropical dry forests, which, while limited in distribution, hold global importance. The paper is extensively illustrated with photographs of Acalyptris adults and their genitalia, along with maps, habitats, and molecular phylogenetic trees. Full article

Quaternary ammonium compounds (QACs) are active ingredients in hundreds of disinfectants for controlling the epidemic of infectious diseases like SARS-CoV-2 (COVID-19), and are also widely used in shale gas exploitation. The occurrence of QAC-resistant bacteria in the environment could enlarge the risk of sterilization failure, which is not fully understood. In this study, QAC-resistant bacteria were enumerated and characterized in 25 soils collected from shale gas exploitation areas. Total counts of QAC-resistant bacteria ranged from 6.81 × 10³ to 4.48 × 10⁵ cfu/g, accounting for 1.59% to 29.13% of the total bacteria. In total, 29 strains were further purified and identified as Lysinibacillus, Bacillus, and Klebsiella genus. There, bacteria covering many pathogenic bacteria showed different QACs tolerance with MIC (minimum inhibition concentration) varying from 4 mg/L to 64 mg/L and almost 58.6% of isolates have not previously been found to tolerate QACs. Meanwhile, the QAC-resistant strains in the produced water of shale gas were also identified. Phylogenetic trees showed that the resistant species in soil and produced water are distinctly different. That is the first time the distribution and characterization of QAC-resistant bacteria in the soil environment has been analyzed. Full article

(1) Background: Plant diversity has long been assumed to predict soil microbial diversity. The mutualistic symbiosis between forest trees and ectomycorrhizal (EM) fungi favors strong correlations of EM fungal diversity with host density in terrestrial ecosystems. Nevertheless, in contrast with host tree effects, neighboring plant effects are less well studied. (2) Methods: In the study presented herein, we examined the α-diversity, community composition, and co-occurrence patterns of EM fungi in Quercus acutissima across different forest types (pure forests, mixed forests with Pinus tabuliformis, and mixed forests with other broadleaved species) to ascertain how the EM fungi of focal trees are related to their neighboring plants and to identify the underlying mechanisms that contribute to this relationship. (3) Results: The EM fungal community exhibited an overall modest but positive correlation with neighboring plant richness, with the associations being more pronounced in mixed forests. This neighboring effect was mediated by altered abiotic (i.e., SOC, TN, LC, and LP) and biotic (i.e., bacterial community) factors in rhizosphere soil. Further analysis revealed that Tomentella_badia, Tomentella_galzinii, and Sebacina_incrustans exhibited the most significant correlations with plant and EM fungal diversity. These keystone taxa featured low relative abundance and clear habitat preferences and shared similar physiological traits that promote nutrient uptake through contact, short-distance and medium-distance smooth contact-based exploration types, thereby enhancing the potential correlations between EM fungi and the neighboring plant community. (4) Conclusions: Our findings contribute to the comprehension of the effect of neighboring plants on the EM fungal community of focal trees of different forest communities and the biodiversity sensitivity to environmental change. Full article

Plants interact with both antagonistic and mutualistic animals during reproduction, with the outcomes of these interactions significantly influencing plant reproductive success, population dynamics, and the evolution of plant traits. Here, we investigated the spatial and temporal variations in the interactions between Juniperus thurifera, its seed-dispersing birds, and three specific arthropod species that attack the fleshy cones during the predispersal period. We assessed how plant traits affect levels of cone damage by arthropods and seed dispersal by birds, the occurrence of competition among arthropod species, and the impact of seed predators on the activity of frugivores. Plant traits, cone damage by arthropods, and seed dispersal by birds showed spatiotemporal variability. Fluctuation in cone abundance was the leading factor determining damage by arthropods and bird dispersal with a secondary role of cone traits. Large crops satiated predispersal seed predators, although the amount of frugivory did not increase significantly, suggesting a potential satiation of bird dispersers. Crop size and cone traits at individual trees determined preferences by seed predator species and the foraging activity of bird dispersers. Competition among arthropods increased during years of low cone production, and seed predators sometimes negatively affected bird frugivory. High supra-annual variations in cone production appear to be a key evolutionary mechanism enhancing J. thurifera reproductive success. This strategy reduces the impact of specialized seed predators during years of high seed production, despite the potential drawback of satiating seed dispersers. Full article

Serpula himantioides is a globally distributed wood decay fungus that causes heartwood decay in several tree species. We investigated the occurrence of S. himantioides fruiting bodies in Japan for two years and six months to characterize their biology. The fruiting bodies matured in autumn and occurred on living Chamaecyparis pisifera, Chamaecyparis obtusa, Larix kaempferi, and Cryptomeria japonica trees, as well as on dead trees and soil. Assessing three circular plots, the incidence of living trees with S. himantioides fruiting bodies was lowest in the plot with the most advanced heartwood decay. Furthermore, fruiting bodies occurred more frequently in the lower slope direction of the trunk. Analysis using the pair correlation function suggested that the spatial distribution pattern of living trees with fruiting bodies may change from intensive to random with heartwood decay progress. Finally, according to generalized linear and generalized linear mixed models, which were used to investigate the factors affecting the development of fruiting bodies in C. pisifera, C. obtusa, and L. kaempferi, no clear relationship was found between the presence or absence of fruiting bodies and heartwood decay. Thus, we suggest that fruiting bodies can occur in healthy living trees as well as in living trees in the early stages of heartwood decay. Full article

Liver transplantation is known to generate significant inflammation in the entire organ based on the metabolic profile and the tissue’s ability to recover from the ischemia-reperfusion injury (IRI). This cascade contributes to post-transplant complications, affecting both the synthetic liver function (immediate) and the scar development in the biliary tree. The new occurrence of biliary strictures, and the recurrence of malignant and benign liver diseases, such as cholangiocarcinoma (CCA) and primary sclerosing cholangitis (PSC), are direct consequences linked to this inflammation. The accumulation of toxic metabolites, such as succinate, causes undirected electron flows, triggering the releases of reactive oxygen species (ROS) from a severely dysfunctional mitochondrial complex 1. This initiates the inflammatory IRI cascade, with subsequent ischemic biliary stricturing, and the upregulation of pro-tumorigenic signaling. Such inflammation is both local and systemic, promoting an immunocompromised status that can lead to the recurrence of underlying liver disease, both malignant and benign in nature. The traditional treatment for CCA was resection, when possible, followed by cytotoxic chemotherapy. Liver transplant oncology is increasingly recognized as a potentially curative approach for patients with intrahepatic (iCCA) and perihilar (pCCA) cholangiocarcinoma. The link between IRI and disease recurrence is increasingly recognized in transplant oncology for hepatocellular carcinoma. However, smaller numbers have prevented similar analyses for CCA. The mechanistic link may be even more critical in this disease, as IRI causes the most profound damage to the intrahepatic bile ducts. This article reviews the underlying mechanisms associated with biliary inflammation and biliary pathology after liver transplantation. One main focus is on the link between transplant-related IRI-associated inflammation and the recurrence of cholangiocarcinoma and benign liver diseases of the biliary tree. Risk factors and protective strategies are highlighted. Full article

This research investigates the exposure of plant species to extreme drought events in the Brazilian Atlantic Forest, employing an extensive dataset collected from 205 automatic weather stations across the region. Meteorological indicators derived from hourly data, encompassing precipitation and maximum and minimum air temperature, were utilized to quantify past, current, and future drought conditions. The dataset, comprising 10,299,236 data points, spans a substantial temporal window and exhibits a modest percentage of missing data. Missing data were excluded from analysis, aligning with the decision to refrain from using imputation methods due to potential bias. Drought quantification involved the computation of the aridity index, the analysis of consecutive hours without precipitation, and the classification of wet and dry days per month. Mann–Kendall trend analysis was applied to assess trends in evapotranspiration and maximum air temperature, considering their significance. The hazard assessment, incorporating environmental factors influencing tree growth dynamics, facilitated the ranking of meteorological indicators to identify regions most exposed to drought events. The results revealed consistent occurrences of extreme rainfall events, indicated by positive outliers in monthly precipitation values. However, significant trends were observed, including an increase in daily maximum temperature and consecutive hours without precipitation, coupled with a decrease in daily precipitation across the Brazilian Atlantic Forest. No significant correlation between vulnerability ranks and weather station latitudes and elevation were found, suggesting that geographical location and elevation do not strongly influence observed dryness trends. Full article

Mexico ranks second in the world for Persian lime (Citrus latifolia) exports, making it the principal citrus exporter within the national citrus industry, exporting over 600,000 tons per year. However, diseases are the main factor reducing production, resulting in significant economic losses. Among these diseases, fungal diseases like dieback, caused by species of Lasiodiplodia, are an emerging issue in Persian lime. Symptoms include gummosis, twig and branch dieback, cankers, the necrosis of bark and wood, fruit mummification, and tree decline. The aim of this study was to investigate the occurrence and pathogenicity of the fungal species associated with twig and branch dieback, cankers, and decline of Persian lime trees in southern Mexico, and to elucidate the current status of the Lasiodiplodia species causing the disease in Mexico. During June, July, and August of 2023, a total of the 9229 Persian lime trees were inspected across 230 hectares of Persian lime orchards in southern Mexico, and symptoms of the disease were detected in 48.78% of the trees. Branches from 30 of these Persian lime trees were collected. Fungal isolates were obtained, resulting in a collection of 40 strains. The isolates were characterized molecularly and phylogenetically through the partial regions of four loci: the internal transcribed spacer region (ITS), the β-tubulin gene (tub2), the translation elongation factor 1-alpha gene (tef1-α), and the DNA-directed RNA polymerase II second largest subunit (rpb2). Additionally, pathogenicity was assessed, successfully completing Koch’s postulates on both detached Persian lime branches and certified 18-month-old Persian lime plants. Through multilocus molecular phylogenetic identification, pathogenicity, and virulence tests, five species were identified as causal agents: L. iraniensis, L. lignicola, L. mexicanensis, L. pseudotheobromae, and L. theobromae. This study demonstrates that in southern Mexico, at least five species of the genus Lasiodiplodia are responsible for dieback in Persian lime. Additionally, this is the first report of L. lignicola and L. mexicanensis as causal agents of the disease in citrus, indicating novel host interactions between species of Lasiodiplodia and C. latifolia. Full article

Rubus includes a group of important plants with medicinal and culinary significance, as well as ornamental value. However, due to its status as one of the largest genera in the Rosaceae family and frequent occurrences of apomixis, hybridization, and polyploidy among its species, the morphological identification of this genus is highly challenging. The plastid genome serves as a valuable tool for studying the evolutionary relationships among plants. Therefore, based on the raw data of the whole genomes from six popular Rubus taxa, the complete Cp genomes were assembled, annotated, and subjected to comparative and phylogenetic analyses. In this research, six newly complete Cp genomes were reported, which all had a representative quadripartite formation, with a similar GC content (37.06%–37.26%), and their size ranged from 155,493 bp to 156,882 bp. They all encode 111 unique genes, containing 79 PCGs, 28 tRNA, and 4 rRNA. The analysis of gene structure of different groups showed that the sequence and content of genes were relatively conservative, and there was no gene rearrangement. Most of their PCGs had a high frequency codon usage bias and all genes were in purifying selection states. A nucleotide variable analysis revealed that the IR areas had less variation than the SC areas, and there was the greatest diversity in the SSC area. Eleven hypervariable areas were identified, containing rpl32-trnL, rpl32, rps16-trnQ, trnT-trnL, trnQ-psbK, trnK-rps16, and rps15-ycf1, which could be used as labels for genetic diversity and taxa identification. The phylogenetic trees of 72 Rosaceae plants were constructed based on ML and BI methods. The results strongly support the theory that the Rubus genus was a monophyletic group and sampled species could be arranged into seven subgenera. Overall, this study sheds its new light into the phylogeny of the Rubus genus, providing valuable insights for future studies of the Cp genomes from the expanded taxa of the Rosaceae family. Full article

The Panchthar–Ilam–Taplejung Corridor in Eastern Nepal, managed through community forestry, is a crucial habitat for the Himalayan red panda, an endangered carnivore threatened by forest degradation and illegal trade. We deployed the altitude line intercept and ten-tree plotless methods to evaluate the distribution of Himalayan red pandas and the environmental factors affecting them within four community forests, namely Singhadevi, Chitre-Hile, Chhipchhipe, and Kalikhop-Dadehli, of the corridor. We established a total of 23 transects and 92 plots, identifying 41 plots with evidence of the Himalayan red panda’s presence. The sign occurrence revealed a clumped distribution of the species across all four community forests. The Himalayan red panda signs were observed between 2200 m and 2700 m above sea level (asl) and the majority of them were from habitats with a moderate slope within elevations of 2400 m to 2500 m asl. The primary sites for the defecation were large horizontal tree branches (78.12%), followed by forest ground (15.62%) and rocks (6.25%). The dominant tree species in their habitats included Lithocarpus pachyphylla (Importance value index, IVI = 45.05), Symplocus theifolia (IVI = 37.19), Symplocos pyrifolia (IVI = 20.99), Quercus lamellosa (IVI = 19.25), and Magnolia campbellii (IVI = 17.25). Among the thirteen environmental variables examined, proximity to water, distance to road, bamboo density, and Normalized Difference Vegetation Index were identified as the major factors influencing the Himalayan red panda’s distribution. This research provides crucial insights to develop site-specific habitat management plans for community forestry. Full article

As a result of the advocacy of Indigenous communities and increasing evidence of the ecological importance of fire, California has invested in the restoration of intentional burning (the practice of deliberately lighting low-severity fires) in an effort to reduce the occurrence and severity of wildfires. Recognizing the growing need to monitor the impacts of these smaller, low-severity fires, we leveraged Sentinel-2 imagery to reveal important inter- and intra-annual variation in grasslands before and after fires. Specifically, we explored three methodological approaches: (1) the complete time series of the normalized burn ratio (NBR), (2) annual summary metrics (mean, fifth percentile, and amplitude of NBR), and (3) maps depicting spatial patterns in these annual NBR metrics before and after fire. We also used a classification of pre-fire vegetation to stratify these analyses by three dominant vegetation cover types (grasses, shrubs, and trees). We applied these methods to a unique study area in which three adjacent grasslands had diverging fire histories and showed how grassland recovery from a low-severity intentional burn and a high-severity wildfire differed both from each other and from a reference site with no recent fire. On the low-severity intentional burn site, our results showed that the annual NBR metrics recovered to pre-fire values within one year, and that regular intentional burning on the site was promoting greater annual growth of both grass and shrub species, even in the third growing season following a burn. In the case of the high-severity wildfire, our metrics indicated that this grassland had not returned to its pre-fire phenological signals in at least three years after the fire, indicating that it may be undergoing a longer recovery or an ecological shift. These proposed methods address a growing need to study the effects of small, intentional burns in low-biomass ecosystems such as grasslands, which are an essential part of mitigating wildfires. Full article

Several researchers recognize the importance of plants as effective tools for environmental biomonitoring. The black poplar (Populus nigra L.) often emerges as a useful bioindicator of air quality in urban environments, where this tree species is widely employed for urban areas. Here, we used ICP-MS analysis to assess the presence and concentration of trace elements, with a special focus on heavy metals (HMs), in black poplar leaves and soil samples from three urbanized sites showing varying degrees of environmental quality. Specifically, the foliar concentrations of Zn (173.3 ppm), Cd (0.7 ppm), Co (1.1 ppm) and As (0.2 ppm) exceeded reference values for unpolluted sites, indicating potential environmental hazards. Additionally, we correlated the foliar concentrations of HMs with those quantified in soil and with air quality data provided by the regional air quality-monitoring network. Subsequently, we estimated the values of foliar fluctuating asymmetry, and evaluated their relationships with HM concentrations in both leaves and soil. Our results suggest that element concentrations in black poplar leaves are related to soil contamination and atmospheric quality, and the extent depends on the proximity to relevant pollution sources. Furthermore, the study species showed a pronounced accumulation capacity for some HMs (i.e., Zn, Cd) commonly found in particulate matter. The extent of foliar fluctuating asymmetry is related to atmospheric quality and HM soil concentration, possibly because of the growth anomalies induced by this kind of environmental contamination. Overall, our data indicate the study species can supply an effective biomonitoring service in urbanized contexts, offering valuable insights into the occurrence and biological implications of heavy metal contamination. Full article