Search Results (5,863)

Linkage disequilibrium (LD) maps are fundamental tools for exploring the genetic basis of traits of interest in any species. Quantifying LD patterns in cattle breeds has been made possible due to the availability of huge quantities of SNPs through modern sequencing technology. The present research aims to determine and compare linkage disequilibrium levels at different distances on the genome of Sistani domestic cattle and subspecies of Bos taurus and Bos indicus based on genome SNP data. A total of 60 Bos indicus Sahiwal (dairy) and Nellore (beef), Bos taurus Hereford (beef) and Holstein (dairy), and Sistani cattle were sampled and genotyped using Illumina Bovine HD 770 k chip. To ensure the caliber of the sequencing, 10 samples (genetically sequenced cattle) were randomly chosen among all breeds represented. LD was evaluated at distances of 1–50 Kb, 50–100 Kb, 100–500 Kb, and 0.5–1 Mb, and average r² values for all autosomes were calculated within distance classes. For all breeds, the average r² was over 0.2 at distances less than 100 Kb, while for Sistani, Nellore, and Sahiwal, the average r² was above 0.2 between 100 and 500 Kb. Furthermore, for all breeds, the average r² exceeding 0.3 was noted at distances smaller than 50 Kb, while this amount for Holstein and Hereford was observed at distances between 50 and 100 Kb. In various breeds, greater changes in LD levels were observed (at <10 Kb distance). In this study, the Sistani breed showed LD decay patterns similar to indicine cattle (Nellore and Sahiwal), which may be due to the geographic proximity of the Sistan and Baluchestan province to Pakistan, the origin of indicine breeds (they may have had genetic or kinship relationships over a long historical period), or due to ascertainment bias in the SNP chips used. Full article

Kobuviruses (KoVs) are a group of small, non-enveloped RNA viruses classified in the genus Kobuvirus within the Picornaviridae family, comprising Aichivirus species A to F. KoVs have been identified in humans and several mammals, including domestic ungulates. This study investigated the presence of KoVs in a collection of bovine stool samples (n = 38) obtained from animals with enteritis or without clinical signs. By RT-PCR screening, KoV RNA was detected in 10/ 38 animals (26.3%). Six of the ten positive animals had enteric signs. On sequence analysis of the amplicons, eight strains were related to species Aichivirus B, commonly identified in cattle. In contrast, two strains (ITA/2019/572-1 and ITA/2020/bovine/30-2), displayed the highest nt identity (up to 97.1%) to cattle, yak, and goat Aichivirus D strains. On whole genome analysis, strains ITA/2019/572-1 and ITA/2020/30-2 showed 88.9% nt identity to each other and 87.8–90.3% nt to the bovine kobuvirus strain CHN/2021/ON730709 identified in China. Interestingly these three Aichivirus D strains showed a recombinant makeup, clustering with D1 genotype in the capsid region and with D2 genotype in the non-structural genes. These findings suggest that Aichivirus D KoVs are common components of livestock virome. Understanding the genetic diversity of KoVs in animals will be useful to improve the diagnostics and gather epidemiological data. Full article

Communally owned rangelands serve as critical grazing areas for mixed livestock species such as cattle and goats, particularly in the arid and semi-arid regions of Southern Africa. This study aimed to evaluate the nutritional composition and woody species composition of communal rangelands where cattle and goat flocks graze together and to investigate the influence of grazing intensity on vegetation dynamics. Vegetation surveys were conducted across varying grazing intensities to assess species richness, biomass, and dietary preferences, while soil properties were analyzed to determine their interaction with vegetation attributes. Stepwise regression and path analyses were used to explore the relationships between soil characteristics, vegetation structure, and livestock dietary choices. The results revealed that high grazing pressure significantly reduced grass biomass (p = 0.003) and woody species density (p = 0.007) while increasing shrub cover (p = 0.018). Nutritional analysis indicated that goats preferred woody shrubs, which contributed 42.1% of their diet compared to 27.8% for cattle (p = 0.008). Regression analysis further showed that soil organic carbon (p = 0.002) and tree height (p = 0.041) were strong predictors of shrub cover. Seasonal variation significantly affected forage availability and nutritional content, with higher crude protein levels recorded during the wet season (p = 0.007). These findings suggest that grazing management strategies should be tailored to the distinct forage needs of cattle and goats to maintain the productivity and ecological stability of communal rangelands. A holistic approach that considers livestock dietary preferences, vegetation composition, and soil health is essential for sustainable rangeland management in mixed-species grazing systems. Full article

Blood is an important component for maintaining animal lives and synthesizing sugars, lipids, and proteins in organs. Revealing the relationship between genes and metabolite expression and milk somatic cell count (SCC), milk fat percentage, milk protein percentage, and lactose percentage in blood is helpful for understanding the molecular regulation mechanism of milk formation. Therefore, we separated the buffy coat and plasma from the blood of Xinjiang Brown cattle (XJBC) and Chinese Simmental cattle (CSC), which exhibit high and low SCC/milk fat percentage/milk protein percentage/lactose percentages, respectively. The expression of genes in blood and the metabolites in plasma was detected via RNA-Seq and LC-MS/MS, respectively. Based on the weighted gene coexpression network analysis (WGCNA) and functional enrichment analysis of differentially expressed genes (DEGs), we further found that the expression of genes in the blood mainly affected the SCC and milk fat percentage. Immune or inflammatory-response-related pathways were involved in the regulation of SCC, milk fat percentage, milk protein percentage, and lactose percentage. The joint analysis of the metabolome and transcriptome further indicated that, in blood, the metabolism pathways of purine, glutathione, glycerophospholipid, glycine, arginine, and proline are also associated with SCC, while lipid metabolism and amino-acid-related metabolism pathways are associated with milk fat percentage and milk protein percentage, respectively. Finally, related SCC, milk fat percentage, and milk protein percentage DEGs and DEMs were mainly identified in the blood. Full article

The end-of-life (i.e., on-farm euthanasia and culling, including fitness for transport to slaughter) of a dairy cow or calf is preceded by a series of decisions often influenced by many complex factors. The aim of this study was to utilize the opinions of experts with roles in the dairy supply chain to identify factors that influence end-of-life decision-making for dairy cattle. Twenty experts serving in supporting roles in the dairy supply chain participated in a survey containing 17 open-ended questions. Of the participants, 55% (n = 11) identified as veterinarians and the remaining 45% (n = 9) participated in other segments of the dairy supply chain. Twelve themes were identified in the qualitative analysis of survey responses. The themes included: Training and Resources, Cattle Health Management, Decision-Making Criteria, Company Culture, Personal Beliefs, Human Well-Being, Animal Welfare, Economics, Guidelines and Inspections, Consumer Perceptions, Supply Chain Considerations, and Communication. Experts indicated that training programs should address euthanasia or fitness-for-transport criteria, the knowledge of common health conditions, and information about what happens to cattle after leaving the dairy. Additional influencing factors included personal beliefs, economics, company culture, and supply chain considerations. Full article

Mycoplasma bovis is a global concern for the cattle industry owing to its high rates of infection and resulting morbidity, but there are no reports on the lipid composition and metabolic pathways. This study examined the lipidomics of M. bovis to better investigate the biological characteristics of clinical isolates of M. bovis. The M. bovis strains NX114 and PG45, cultivated to log-phase, underwent untargeted lipidomics via ultra-high-performance liquid chromatography-mass spectrometry for differential analysis. Over 65 lipid types and 1476 lipid molecules were identified. We found that glycerophospholipids and sphingolipids constitute the predominant lipid components of M. bovis, with significant constituents of its cell membrane comprising ceramides, phosphatidylglycerols, sphingomyelins, triacylglycerols, hexosylceramides, ether-linked oxidized phosphatidylcholines, and oxidized phosphatidylglycerols. Secondly, 562 differentially expressed lipid molecules were identified, including 17 lipid subclasses (15 up-regulated and 2 down-regulated) with significant differences in relative content. These findings indicate that distinct M. bovis isolates contain structurally varied lipid molecules, with sphingomyelin, phosphatidylinositol, cardiolipin, and phosphatidylcholine being characteristic lipids. The glycerophospholipid metabolism pathway was identified as a key pathway regulating lipid metabolism in M. bovis by KEGG pathway enrichment analysis. The results indicated alterations in the lipid metabolism of M. bovis, offering insights into its pathogenic mechanisms. Full article

This research investigates the impact of various fertilization methods on the bioactive compound content and antioxidant activity of celery (Apium graveolens L.) root and leaf. Mineral fertilizer, poultry manure, cattle manure, sheep manure, supercompost, and molasses were applied. Total dry weight, phenolic and flavonoid compounds, and antioxidant activity were assessed, along with fiber, protein, fat, sugar, and starch in celery root. Principal component analysis (PCA) and cluster analysis were used to correlate production conditions with the parameters. The highest fiber and protein contents were found in mineral-fertilized roots, while total fat and sugar were highest in cattle-manure-fertilized roots, and starch was highest in supercompost-fertilized roots. Fertilization with supercompost yielded the highest total phenolic and flavonoid contents in leaves, while mineral fertilizer resulted in the highest antioxidant activity in roots. Notably, the highest dry weight in leaves and the highest total phenolic and flavonoid contents in roots were also observed with supercompost. PCA and cluster analysis demonstrated significant correlations between plant parts, i.e., the celery root and leaf samples, cultivation conditions, and the observed parameters, emphasizing the importance of selecting suitable cultivation methods to optimize celery’s nutritional properties. Also, these findings suggest that supercompost, a byproduct of breweries, could potentially replace animal-based organic fertilizers, addressing the problem of reduced availability due to declining livestock numbers. Full article

Approximately 30 distinct Mycoplasma species have been isolated from cattle, but only a few are pathogenic and can cause serious respiratory diseases. Consequently, this study aimed to identify Mycoplasma spp. infections in cattle with bovine respiratory disease (BRD), considering factors such as animal demographics, concurrent infections with other pathogens, post-mortem clinical findings and histological examinations, and seasonality. A total of 326 samples were collected from 322 cattle that had died from BRD in Northwestern Italy. A total of 54 animals (16.8%) tested positive for Mycoplasma spp., and Mycoplasma bovis (n = 22, 40.7%) and Mycoplasma dispar (n = 13, 24.1%) were the most frequently detected species among the examined cattle. Among positive cattle, those aged five months or younger were approximately five times more likely to be infected by Mycoplasma dispar than by Mycoplasma bovis compared to those older than five months (proportional incidence ratio: 5.1, 95% CI 1.2–21.2). The main bacterial pathogens identified in cattle exhibiting co-infection was Pasteurella multocida, whereas the main viral pathogens were BRSV and BoHV-1. Histopathological investigations predominantly revealed catarrhal bronchopneumonia or purulent catarrhal bronchopneumonia among the examined cattle. Finally, Mycoplasma hyopharyngis, a species isolated from the pharyngeal and nasal cavities of pigs so far, was detected for the first time in the pneumonic lung of a bovine infected with BRD. Further investigations are necessary to thoroughly characterize its host range and pathogenic potential. Full article

Subacute rumen acidosis (SARA) is a significant concern in dairy cattle fed grain-rich diets. To elucidate the underlying pathophysiological mechanisms, ruminal papilla biopsies are often used. This study aimed to assess how the sampling site along the ruminal papilla influences gene expression profiles in rumen epithelium during SARA. Rumen biopsies from five ruminal-cannulated non-lactating Holstein cows were collected during feeding of a forage diet (FD) and seven (wk1) and 21 days (wk3) after transition to high-grain (HG) feeding. Gene expression in apical (AP), basal (BP), and total length (TP) papillae were compared using RT-qPCR. Significant diet-induced effects were observed in AP for DSG1 (wk3, p = 0.0317), ZO1 (wk1 and wk3, p = 0.0159), GLUT3 (wk3, p = 0.0159), TLR4 (wk3, p = 0.0635), and NFKB (wk1, p = 0.0159), but hardly in BP or TP. Within wk1, TP showed higher transcript levels of ZO1 and TLR4 (p = 0.0079) and SGLT1 (p = 0.0317) compared to AP and BP independently from diet effects. These findings suggest that the apical parts of rumen papillae biopsies are most suitable for gene expression analyses to investigate diet-induced effects on rumen physiology and underscore the importance of considering the sampling site for accurate gene expression studies in rumen epithelium during SARA, providing valuable insights for future research and diagnostic approaches in managing rumen health in dairy cattle. Full article

This study aimed to investigate the selective effect of the reproductive tract mucus in cows that have consistently produced offspring of a single sex on X/Y spermatozoa. We collected mucus from the reproductive tract of cows that had given calvings to offspring of the same sex, or alternated between sexes, for more than five consecutive calvings. We evaluated the pH of reproductive tract mucus. Subsequently, we conducted a spermatozoa penetration assay; the proportions of X and Y spermatozoa after penetration were then identified by dual TaqMan qPCR and flow cytometry. This was followed by in vitro fertilization and embryo sex determination experiments. Immediately afterwards, computer-aided spermatozoa analysis was employed to analyze the spermatozoa that had penetrated through different types of mucus in the reproductive tract. The analysis indicated that the reproductive tract mucus of cows consistently producing male or female calves exhibited selectivity towards X/Y spermatozoa. The differences in the pH values of the reproductive tract mucus among cows continuously producing male calves, those continuously producing female calves, and those alternately giving birth to male and female calves were not significant (p ≥ 0.05). The outcome of dual TaqMan qPCR for cows consistently producing male calves was Y: 79.29 ± 4.28% vs. X: 21.67 ± 4.53%; for cows consistently producing female calves, the equation was Y: 25.05 ± 4.88% vs. X: 75.34 ± 5.13%. The results of flow cytometry processing revealed the following proportions: for cows consistently producing male calves: Y: 83.33 ± 5.52% vs. X: 17.23 ± 4.74%; for cows consistently producing female calves: Y: 24.81 ± 4.13% vs. X: 76.64 ± 4.21%. The outcomes of embryo sex determination for cows consistently producing male calves were as follows: male embryos vs. female embryos (79.60 ± 2.87% vs. 21.07 ± 2.51%); for cows consistently producing female calves, the outcomes for male embryos vs. female embryos were 25.58 ± 3.96% vs. 75.63 ± 3.55%. Computer-aided analysis revealed that the concentration of spermatozoa penetrating the reproductive tract mucus in cows alternating between male and female calves (9.09 ± 0.72 million/mL) was significantly higher than that in cows consistently producing male calves (6.01 ± 1.19 million/mL) and cows consistently producing female calves (5.61 ± 0.60 million/mL). There were no significant differences in spermatozoa motility, the proportion of progressive motile spermatozoa, and curvilinear, straight-line, and average path velocities. Collectively, these findings indicate that the reproductive tract mucus of cows consistently producing offspring of a single sex exhibits selectivity towards either X or Y spermatozoa. This finding is of great significance for studying the impact of maternal factors on offspring sex. Full article

Background/Objectives: Understanding the genetic architecture of autochthonous European cattle breeds is important for developing effective conservation strategies and sustainable breeding programs. Spanish beef cattle, which trace their origins to ancient migrations from the Near East with later admixture from African populations, exhibit a rich genetic diversity shaped by environmental adaptation and selective breeding. Runs of Homozygosity (ROH) are extended stretches of identical genetic material inherited from both parents. They serve as indicators of inbreeding and selection signatures within populations. ROH islands, or regions of the genome where ROH segments are highly concentrated across individuals within a breed, indicate genomic regions under selective pressure. Methods: This study explores the distribution of ROH islands across seven Spanish beef cattle breeds (Asturiana de los Valles, Avileña-Negra Ibérica, Bruna dels Pirineus, Morucha, Retinta, Pirenaica, and Rubia Gallega). By analyzing high-density SNP data, we characterized ROH patterns and identified genomic regions with high levels of homozygosity, which may indicate selection pressures or common ancestry. Results: Our findings revealed breed-specific ROH patterns as well as shared ROH islands, underscoring genetic relationships and differentiation among the breeds. Notably, Morucha displayed the highest number of ROH, while Asturiana de los Valles had the fewest. F_ROH values, which indicate genomic inbreeding, varied among the breeds, with Morucha and Retinta being associated with higher values. We identified 57 ROH islands, with shared regions among populations that suggest common ancestral selection pressures. Key genes within these regions, like MSTN, are associated with muscle growth, body weight, and fertility. Conclusions: This study offers valuable insights for breeding strategies and conservation efforts, highlighting the genetic diversity and historical background of Spanish cattle breeds. Full article

Lameness, also attributed to musculoskeletal disorders of the back, is a major issue in dairy cow farming, affecting both animal welfare and economics. Chiropractic techniques are well studied in humans and horses for the treatment of musculoskeletal disorders. The anatomy of the bovine spine differs significantly from that of horses, but the knowledge of the animal’s specific anatomy is crucial for chiropractic treatment. This report explores how chiropractic methods could be adapted to cattle, considering their unique anatomy, and potentially integrated into standard veterinary care. Five case reports and an example of measuring the alignment of the facet joints in the spine are presented and discussed. Chiropractic treatments showed success in alleviating lameness and spinal issues in dairy cows, particularly when combined with other interventions. However, the role of chiropractic treatment in cattle as a complementary therapy needs further research. Full article

This study explores milk composition and blood markers in cows across lactation stages. Holstein cows were divided into four groups: beginning of lactation (BL; n = 21), peak of lactation (PL; n = 21), middle of lactation (ML; n = 21), and end of lactation (EL; n = 20). Blood (1 × 15 mL) and milk samples (1 × 100 mL) were collected for biomarker analysis. Blood chemistry profiles were determined using a clinical chemistry analyser, and milk lactose, fat, and protein levels (%) were determined using an infrared absorbance analyser. Minerals (Ca, P, and Mg) in milk were determined by atomic absorption spectrometry after mineralizing the samples. Glucose was higher in the EL group than in the BL group (p < 0.01), whereas D-beta-hydroxybutyrate (D-BHB) was higher in the BL group than in the PL and ML groups (p < 0.001). Cholesterol was higher in the PL, ML, and EL groups than in the BL group (p < 0.001). Gamma-glutamyl transferase was increased in the PL group compared to the BL group. Phosphorus levels were lower in the PL than in the BL group, whereas protein levels were higher in the EL than in the PL group. Spearman and partial correlation analysis showed several significant associations between the observed variables. Using canonical correlation analysis were identified three significant correlations (r_c1 = 0.853; r_c2 = 0.823; r_c3 = 0.739). The main canonical correlation identified blood TG and milk urea as the strongest variables. According to the canonical loading, the biomarkers TG, Mg, urea, cholesterol, and alkaline phosphatase (U1) are the primary variables associated with milk parameters (V1), specifically with milk urea, milk Mg and P, protein, and lactose. Full article

There is an increasing understanding that some mitral valve pathologies have developmental origins. The time course of valvulogenesis varies by animal model; in cattle, the branched chordae tendineae architecture becomes fully developed at full term. The mechanism by which chordae tendineae bifurcate during fetal development remains unknown. The current study presents a detailed description of bovine chordae tendineae formation and bifurcation during fetal development. Analysis of Movat Pentachrome-stained histological sections of the developing mitral valve apparatus was accompanied by micro-CT imaging. TEM imaging of chordae branches and common trunks allowed the measurement of collagen fibril diameter distributions. We observed a proteoglycan-rich “transition zone” at the junction between the fetal mitral valve anterior leaflet and chordae tendineae with “perforations” lined by MMP1/2 and Ki-67 expressing endothelial cells. This region also contained clusters of proliferating endothelial cells within the bulk of the tissue. We hypothesize this zone marks a region where chordae tendineae bifurcate during fetal development. In particular, perforations created by localized MMP activity serve as a site for the initiation of a “split” of a single chordae attachment into two. This is supported by TEM results that suggest a similar population of collagen fibrils runs from the branches into a common trunk. A clear understanding of normal mitral valvulogenesis and its signaling mechanisms will be crucial in developing therapeutics and/or tissue-engineered valve replacements. Full article

This study investigates gender-based differences in the gut microbiota of Simmental cattle, focusing on bacterial, archaeal, and fungal communities. Fecal samples were collected and analyzed using high-throughput sequencing, with taxonomic classification performed through the SILVA and UNITE databases. Alpha and beta diversity metrics were assessed, revealing significant differences in the diversity and composition of archaeal communities between males and females. Notably, females exhibited higher alpha diversity in archaea, while beta diversity analyses indicated distinct clustering of bacterial and archaeal communities by gender. The study also identified correlations between specific microbial taxa and hematological parameters, with Treponema and Methanosphaera showing gender-specific associations that may influence cattle health and productivity. These findings highlight the importance of considering gender in microbiota-related research and suggest that gender-specific management strategies could optimize livestock performance. Future research should explore the role of sex hormones in shaping these microbial differences. Full article