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14 pages, 2864 KiB  
Article
Antibacterial Activity and Multi-Targeted Mechanism of Action of Suberanilic Acid Isolated from Pestalotiopsis trachycarpicola DCL44: An Endophytic Fungi from Ageratina adenophora
by Juan Wen, Samuel Kumi Okyere, Shu Wang, Jianchen Wang, Ruya Huang, Ziyao Tang, Xiaoxuan Wang, Chenyang Shao and Yanchun Hu
Molecules 2024, 29(17), 4205; https://doi.org/10.3390/molecules29174205 (registering DOI) - 4 Sep 2024
Abstract
Methicillin-resistant Staphylococcus aureus (MRSA) is a highly threatening foodborne pathogen capable of causing severe organ and life-threatening diseases. Over the past years, various commercial antibiotics have been used to treat MRSA infections. However, these commercial antibiotics have not yielded efficient results and also [...] Read more.
Methicillin-resistant Staphylococcus aureus (MRSA) is a highly threatening foodborne pathogen capable of causing severe organ and life-threatening diseases. Over the past years, various commercial antibiotics have been used to treat MRSA infections. However, these commercial antibiotics have not yielded efficient results and also cause other side effects; therefore, there is a need for the development of effective alternatives to replace these commercial antibiotics. Suberanilic acid, an amide alkaloid obtained from the endophytic fungus Pestalotiopsis trachycarpicola DCL44, has been identified as a significant antimicrobial agent. However, its antibiotic properties on multi-drug-resistant bacteria such as MRSA have not been fully explored. Therefore, to investigate the potential antimicrobial mechanism of suberanilic acid against MRSA, a quantitative proteomics approach using tandem mass tagging (TMT) was used. The results obtained in the study revealed that suberanilic acid targets multiple pathways in MRSA, including disruption of ribosome synthesis, inhibition of membrane translocation for nutrient uptake (ABC transporter system), and causing dysregulation of carbohydrate and amino acid energy metabolism. These results provide new insights into the mechanism of action of suberanilic acid against MRSA and offer technical support and a theoretical basis for the development of novel food antimicrobial agents derived from endophytic fungal origin. Full article
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13 pages, 765 KiB  
Review
Cisplatin Resistance and Metabolism: Simplification of Complexity
by Nikolay V. Pervushin, Maria A. Yapryntseva, Mikhail A. Panteleev, Boris Zhivotovsky and Gelina S. Kopeina
Cancers 2024, 16(17), 3082; https://doi.org/10.3390/cancers16173082 - 4 Sep 2024
Abstract
Cisplatin is one of the most well-known anti-cancer drugs and has demonstrated efficacy against numerous tumor types for many decades. However, a key challenge with cisplatin, as with any chemotherapeutic agent, is the development of resistance with a resultant loss of efficacy. This [...] Read more.
Cisplatin is one of the most well-known anti-cancer drugs and has demonstrated efficacy against numerous tumor types for many decades. However, a key challenge with cisplatin, as with any chemotherapeutic agent, is the development of resistance with a resultant loss of efficacy. This resistance is often associated with metabolic alterations that allow insensitive cells to divide and survive under treatment. These adaptations could vary greatly among different tumor types and may seem questionable and incomprehensible at first glance. Here we discuss the disturbances in glucose, lipid, and amino acid metabolism in cisplatin-resistant cells as well as the roles of ferroptosis and autophagy in acquiring this type of drug intolerance. Full article
(This article belongs to the Section Molecular Cancer Biology)
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46 pages, 8010 KiB  
Review
Natural Products and Altered Metabolism in Cancer: Therapeutic Targets and Mechanisms of Action
by Wamidh H. Talib, Media Mohammad Baban, Mais Fuad Bulbul, Esraa Al-Zaidaneen, Aya Allan, Eiman Wasef Al-Rousan, Rahaf Hamed Yousef Ahmad, Heba K. Alshaeri, Moudi M. Alasmari and Douglas Law
Int. J. Mol. Sci. 2024, 25(17), 9593; https://doi.org/10.3390/ijms25179593 - 4 Sep 2024
Abstract
Cancer is characterized by uncontrolled cell proliferation and the dysregulation of numerous biological functions, including metabolism. Because of the potential implications of targeted therapies, the metabolic alterations seen in cancer cells, such as the Warburg effect and disruptions in lipid and amino acid [...] Read more.
Cancer is characterized by uncontrolled cell proliferation and the dysregulation of numerous biological functions, including metabolism. Because of the potential implications of targeted therapies, the metabolic alterations seen in cancer cells, such as the Warburg effect and disruptions in lipid and amino acid metabolism, have gained attention in cancer research. In this review, we delve into recent research examining the influence of natural products on altered cancer metabolism. Natural products were selected based on their ability to target cancer’s altered metabolism. We identified the targets and explored the mechanisms of action of these natural products in influencing cellular energetics. Studies discussed in this review provide a solid ground for researchers to consider natural products in cancer treatment alone and in combination with conventional anticancer therapies. Full article
(This article belongs to the Special Issue Anti-cancer Effects of Natural Products)
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15 pages, 4582 KiB  
Article
Research on Energy Intensity of Wheat Harvesting at Different Ripeness Phases with a New Stripping–Threshing Unit
by Viktor Pakhomov, Dmitry Rudoy, Sergey Kambulov and Tatyana Maltseva
AgriEngineering 2024, 6(3), 3159-3173; https://doi.org/10.3390/agriengineering6030180 - 4 Sep 2024
Abstract
Cereal grain crops are used as main food and raw feed materials all over the world. Among cereal crops, wheat occupies a leading place as the most valuable crop. Harvesting is the most energy-intensive stage in wheat cultivation. Therefore, improving technologies and tools [...] Read more.
Cereal grain crops are used as main food and raw feed materials all over the world. Among cereal crops, wheat occupies a leading place as the most valuable crop. Harvesting is the most energy-intensive stage in wheat cultivation. Therefore, improving technologies and tools to reduce energy costs in this process is an urgent task. A new stripping and threshing unit for harvesting cereal crops has been developed, allowing the harvesting of grain at both full maturity and in the early stages of maturity, when the grain has an increased content of protein and amino acids and is a valuable raw feed material. The new unit consists of a stripping and threshing unit. The stripping unit consists of a stripping drum and stripping combs. The threshing unit contains replaceable decks that collide with the grain, separating it from the ear; an auger for transporting the heap to the unloading device; and a blade beater with a cut-off shield. Wheat grain in the early stages of maturity has a strong connection with the ear, as a result of which harvesting such grain can be energy-intensive and impractical. In this regard, the purpose of this research was to study the dynamics of changes in the energy intensity of the wheat grain harvesting process during ripening and to compare the energy intensity of the harvesting process with the new unit with the energy intensity of a combine harvester. The methodology is based on measuring torque on the shaft of the stripping and threshing unit. The results show that the power required for stripping by the new unit is reduced from 8–10 kW to 2–4 kW, which is 2.5–4 times lower. The difference in power values between harvesting at the hard wax ripeness stage and full ripeness is only 1–1.5 kW, indicating the feasibility of harvesting grain at this stage. Full article
(This article belongs to the Section Agricultural Mechanization and Machinery)
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12 pages, 5807 KiB  
Article
Maize Class C Heat Shock Factor ZmHSF21 Improves the High Temperature Tolerance of Transgenic Arabidopsis
by Yurong Xie and Yuhan Ye
Agriculture 2024, 14(9), 1524; https://doi.org/10.3390/agriculture14091524 - 4 Sep 2024
Abstract
High temperatures seriously threaten the global yield of maize. The objectives of the present study were to explore the key candidate gene involved in heat shock responses in maize and its potential biological function to heat stress. Here, we identified a Class C [...] Read more.
High temperatures seriously threaten the global yield of maize. The objectives of the present study were to explore the key candidate gene involved in heat shock responses in maize and its potential biological function to heat stress. Here, we identified a Class C heat shock factor, ZmHSF21, from maize leaves and used molecular biological and plant physiological assays to investigate its roles in transgenic Arabidopsis. ZmHSF21 encodes a putative protein of 388 amino acids. We showed that ZmHSF21 was expressed in most tissues of maize with relatively high expression in leaves and silks but rather low in roots and stalks, and its expression level in leaves was significantly up-regulated by heat treatment. We also showed that overexpression of ZmHSF21 in Arabidopsis significantly improved the seed germination frequency and plant survival rate when exposed to heat stress. We demonstrated that, compared with wild-type plants, the activities of peroxidase, superoxide dismutase, and catalase increased while the reactive oxygen species accumulation decreased in ZmHSF21 overexpressors under heat stress conditions. We further demonstrated that ZmHSF21 promoted the transcriptional level of AtAPX2, AtGolS1, and several AtHSPs. Collectively, the first-class C HSF in maize (ZmHSF21) is cloned in this study, and the combined results suggest that ZmHSF21 is a positive regulator of heat shock response and can be applied to develop maize high-temperature-tolerant varieties for more yield. Full article
(This article belongs to the Special Issue Breeding and Genetics of Maize)
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18 pages, 7157 KiB  
Article
Novel PDI-NH/PDI-COOH Supramolecular Junction for Enhanced Visible-Light Photocatalytic Phenol Degradation
by Yongzhang Xu, Xingrui Luo, Fulin Wang, Wentao Xiang, Chensheng Zhou, Weiya Huang, Kangqiang Lu, Shaoyu Li, Man Zhou and Kai Yang
Molecules 2024, 29(17), 4196; https://doi.org/10.3390/molecules29174196 - 4 Sep 2024
Abstract
The development of efficient and environmentally friendly photocatalysts is crucial for addressing global energy and environmental challenges. Perylene diimide, an organic supramolecular material, holds great potential for applications in mineralized phenol. In this study, through the integration of different mass ratios of unmodified [...] Read more.
The development of efficient and environmentally friendly photocatalysts is crucial for addressing global energy and environmental challenges. Perylene diimide, an organic supramolecular material, holds great potential for applications in mineralized phenol. In this study, through the integration of different mass ratios of unmodified perylenimide (PDI-NH) into the self-assembly of amino acid-substituted perylenimide (PDI-COOH), a novel supramolecular organic heterojunction (PDICOOH/PDINH) was fabricated. The ensuing investigation focuses on its visible-light mineralized phenol properties. The results show that the optimal performance is observed with a composite mass fraction of 10%, leading to complete mineralization of 5 mg/L phenol within 5 h. The reaction exhibits one-stage kinetics with rate constants 13.80 and 1.30 times higher than those of PDI-NH and PDI-COOH, respectively. SEM and TEM reveal a heterogeneous interface between PDI-NH and PDI-COOH. Photoelectrochemical and Kelvin probe characterization confirm the generation of a built-in electric field at the interface, which is 1.73 times stronger than that of PDI-COOH. The introduction of PDI-NH promotes π-π stacking of PDI-COOH, while the built-in electric field facilitates efficient charge transfer at the interface, thereby enhancing phenol decomposition. The finding demonstrates that supramolecular heterojunctions have great potential as highly effective photocatalysts for environmental remediation applications. Full article
(This article belongs to the Special Issue Green Catalysis Technology for Sustainable Energy Conversion)
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16 pages, 4447 KiB  
Article
Molecular Characterization, Evolution and Expression Analysis of Ammonium Transporter from Four Closely Related Bactrocera Species (Tephritidae)
by Jie Zhang, Qi Wang, Chenhao Liu, Jiaying Liu, Qian Qian, Chuanjian Ru, Leyuan Liu, Shanchun Yan, Wei Liu and Guirong Wang
Life 2024, 14(9), 1114; https://doi.org/10.3390/life14091114 - 4 Sep 2024
Abstract
Numerous insects are attracted to low levels of ammonia, utilizing it as a cue to locate food sources. The Ammonium Transporter (Amt), a highly conserved, atypical olfactory receptor, has been shown to mediate the detection of ammonia in insects. While the attraction of [...] Read more.
Numerous insects are attracted to low levels of ammonia, utilizing it as a cue to locate food sources. The Ammonium Transporter (Amt), a highly conserved, atypical olfactory receptor, has been shown to mediate the detection of ammonia in insects. While the attraction of Tephritidae to ammonia is well established, knowledge about the Amt in this family is limited. The species Bactrocera dorsalis (Hendel 1912), Bactrocera cucurbitae (Coquillett 1899), Bactrocera correcta Bezzi 1916 and Bactrocera tau (Walker 1849), which are common agricultural pests within Tephritidae, exhibit numerous ecological similarities, offering a solid foundation for studying Amt characteristics in this family. In this study, we elucidated the sequences, evolutionary relationships, and expression patterns of Amt in these four species. The results indicated that these Amts share the same open reading frame, containing 1770 bp that encode a protein of 589 amino acid residues. These Amt proteins exhibit the typical structural characteristics of Amts, including an 11-transmembrane domain with an extracellular N-terminus and an intracellular C-terminus. They also have the ability to form trimers in the membrane. Additionally, they contain three conserved amino acid residues essential for ammonia transport: A189, H195, and H352. Phylogenetic and expression pattern analyses showed that they are highly conserved in Diptera and are significantly expressed in antennae. This study is the first report characterizing the Amt gene in four Tephritidae species. These findings provide a foundation for further exploration into the roles of these genes in their particular biological contexts. Full article
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14 pages, 11795 KiB  
Article
Molecular Cloning of QwMYB108 Gene and Its Response to Drought Stress in Quercus wutaishanica Mayr
by Xuefei Zhao, Ying Sun, Yong Wang, Di Shao, Gang Chen, Yiren Jiang and Li Qin
Forests 2024, 15(9), 1557; https://doi.org/10.3390/f15091557 - 4 Sep 2024
Abstract
Drought is a significant environmental limiting factor that restricts the growth of Quercus wutaishanica Mayr. The MYB transcription factor plays a wide role in controlling the growth of plants. In this study, the QwMYB108 gene was cloned and the bioinformatics was analyzed, and [...] Read more.
Drought is a significant environmental limiting factor that restricts the growth of Quercus wutaishanica Mayr. The MYB transcription factor plays a wide role in controlling the growth of plants. In this study, the QwMYB108 gene was cloned and the bioinformatics was analyzed, and we examined how QwMYB108 responded to various gradient drought stresses. The results demonstrated that QwMYB108 encoded 275 amino acids using an 828 bp open reading frame. Subcellular localization indicated that the gene was located in the nucleus. Phylogenetic analysis showed that QwMYB108 was close to Q. robur, and that the highest level of expression was found in leaves, which was significantly different from other tissues. The expression of QwMYB108 increased as the stress degree rose when drought stress was present, and there was a significant difference between severe drought stress and other gradient stress. In this study, the function of QwMYB108 in drought stress response was investigated, and the drought response function gene of Q. wutaishanica was further explored to provide a theoretical basis. Full article
(This article belongs to the Special Issue Abiotic and Biotic Stress Responses in Trees Species)
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22 pages, 6186 KiB  
Article
Synthesis of Some Eco-Friendly Materials for Gold Recovery
by Theodora Babău, Mihaela Ciopec, Narcis Duteanu, Adina Negrea, Petru Negrea, Nicoleta Sorina Nemeş, Bogdan Pascu, Maria Mihăilescu and Catalin Ianasi
Polymers 2024, 16(17), 2512; https://doi.org/10.3390/polym16172512 - 4 Sep 2024
Abstract
The aim of this study was to develop new materials with adsorbent properties that can be used for the adsorption recovery of Au(III) from aqueous solutions. To achieve this result, it is necessary to obtain inexpensive adsorbent materials in a granular form. Concomitantly, [...] Read more.
The aim of this study was to develop new materials with adsorbent properties that can be used for the adsorption recovery of Au(III) from aqueous solutions. To achieve this result, it is necessary to obtain inexpensive adsorbent materials in a granular form. Concomitantly, these materials must have a high adsorption capacity and selectivity. Other desired properties of these materials include a higher physical resistance, insolubility in water, and materials that can be regenerated or reused. Among the methods applied for the separation, purification, and preconcentration of platinum-group metal ions, adsorption is recognised as one of the most promising methods because of its simplicity, high efficiency, and wide availability. The studies were carried out using three supports: cellulose (CE), chitosan (Chi), and diatomea earth (Diat). These supports were functionalised by impregnation with extractants, using the ultrasound method. The extractants are environmentally friendly and relatively cheap amino acids, which contain in their structure pendant groups with nitrogen and sulphur heteroatoms (aspartic acid—Asp, l-glutamic acid—Glu, valine—Val, DL-cysteine—Cys, or serine—Ser). After preliminary testing from 75 synthesised materials, CE-Cys was chosen for the further recovery of Au(III) ions from aqueous solutions. To highlight the morphology and the functionalisation of the material, we physicochemically characterised the obtained material. Therefore, the analysis of the specific surface and porosity showed that the CE-Cys material has a specific surface of 4.6 m2/g, with a porosity of about 3 nm. The FT-IR analysis showed the presence, at a wavelength of 3340 cm−1, of the specific NH bond vibration for cysteine. At the same time, pHpZc was determined to be 2.8. The kinetic, thermodynamic, and equilibrium studies showed that the pseudo-second-order kinetic model best describes the adsorption process of Au(III) ions on the CE-Cys material. A maximum adsorption capacity of 12.18 mg per gram of the adsorbent material was achieved. It was established that the CE-Cys material can be reused five times with a good recovery degree. Full article
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30 pages, 444 KiB  
Review
Nutritional Strategies to Alleviate Stress and Improve Welfare in Dairy Ruminants
by Basiliki Kotsampasi, Maria Anastasia Karatzia, Dimitrios Tsiokos and Stella Chadio
Animals 2024, 14(17), 2573; https://doi.org/10.3390/ani14172573 - 4 Sep 2024
Abstract
Dairy ruminants provide a major part of the livestock and agriculture sectors. Due to the increase in world population and the subsequent increase in dairy product demands, the dairy sector has been intensified. Dairy farming intensification and the subsequent increase in animal nutritional [...] Read more.
Dairy ruminants provide a major part of the livestock and agriculture sectors. Due to the increase in world population and the subsequent increase in dairy product demands, the dairy sector has been intensified. Dairy farming intensification and the subsequent increase in animal nutritional demands and the increase in the average global temperature as well have subjected animals to various stress conditions that impact their health and welfare. Various management practices and nutritional strategies have been proposed and studied to alleviate these impacts, especially under heat stress, as well as during critical periods, like the transition period. Some of the nutritional interventions to cope with stress factors and ensure optimal health and production are the inclusion of functional fatty acids and amino acids and feed additives (minerals, prebiotics, probiotics, essential oils and herbs, phytobiotics, enzymes, etc.) that have been proven to regulate animals’ metabolism and improve their antioxidant status and immune function. Thus, these nutritional strategies could be the key to ensuring optimum growth, milk production, and reproduction efficiency. This review summarizes and highlights key nutritional approaches to support the remarkable metabolic adaptations ruminants are facing during the transition period and to reduce heat stress effects and evaluate their beneficial effects on animal physiology, performance, health, as well as welfare. Full article
12 pages, 7276 KiB  
Communication
A New Variant of Avian Encephalomyelitis Virus Associated with Neurologic Signs in Turkey Poults
by Gun Temeeyasen, Tamer Sharafeldin, Saad Gharaibeh, Nader M. Sobhy, Robert E. Porter and Sunil K. Mor
Pathogens 2024, 13(9), 758; https://doi.org/10.3390/pathogens13090758 - 4 Sep 2024
Viewed by 134
Abstract
Avian encephalomyelitis (AE) is a disease caused by the avian encephalomyelitis virus (AEV) of the genus Tremovirus in the family Picornaviridae. Recently, cases of turkey poults showing neurological signs were submitted to the veterinary diagnostic laboratories at South Dakota State University and the [...] Read more.
Avian encephalomyelitis (AE) is a disease caused by the avian encephalomyelitis virus (AEV) of the genus Tremovirus in the family Picornaviridae. Recently, cases of turkey poults showing neurological signs were submitted to the veterinary diagnostic laboratories at South Dakota State University and the University of Minnesota. The affected birds were showing nervous neurological signs such as tremors, inability to stand, torticollis, and wing drop. Clinical signs were observed by 3 weeks of age. Necropsy of birds revealed no significant gross lesions in the internal organs, including the brain. There was no significant bacterial growth in the brains. Microscopic examination of various sections of the brain revealed multifocal lymphocplasmacytic perivascular cuffs in the cerebellum and cerebral cortex. The brain samples were processed for detection and whole genome sequencing by next-generation sequencing. Three full-length polyprotein sequences (6405 nt) of AEV were assembled. All three sequences shared 99.9–100% nucleotide and 100% amino acid identities with each other. Only 77.7–78.5% of nucleotide and 90.3–92.5% of amino acid identities with AEV field strains and vaccine sequences were available in GenBank. This indicates that a new divergent variant of AEV is circulating in the field and causing AE outbreaks in the Midwest region. Full article
(This article belongs to the Section Viral Pathogens)
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14 pages, 3256 KiB  
Article
A Novel Bi-Directional Channel for Nutrient Uptake across Mycobacterial Outer Envelope
by Lei Liu, Chongzheng Wen, Xiaoying Cai and Weimin Gong
Microorganisms 2024, 12(9), 1827; https://doi.org/10.3390/microorganisms12091827 - 4 Sep 2024
Viewed by 180
Abstract
Nutrients are absorbed by special transport proteins on the cell membrane; however, there is less information regarding transporters across the mycobacterial outer envelope, which comprises dense and intricate structures. In this study, we focus on the model organism Mycolicibacterium smegmatis, which has [...] Read more.
Nutrients are absorbed by special transport proteins on the cell membrane; however, there is less information regarding transporters across the mycobacterial outer envelope, which comprises dense and intricate structures. In this study, we focus on the model organism Mycolicibacterium smegmatis, which has a cell envelope similar to that of Mycobacterium tuberculosis, as well as on the TiME protein secretion tube across the mycobacterial outer envelope. We present transcriptome results and analyze the protein compositions of a mycobacterial surface envelope, determining that more transporters and porins are induced to complement the deletion of the time gene in Mycolicibacterium smegmatis. The TiME protein is essential for nutrient utilization, as demonstrated in the uptake experiments and growth on various monosaccharides or with amino acids as the sole carbon source. Its deletion caused bacteria to be more sensitive to anti-TB drugs and to show a growth defect at an acid pH level, indicating that TiME promotes the survival of M. smegmatis in antibiotic-containing and acidic environments. These results suggest that TiME tubes facilitate bi-directional processes for both protein secretion and nutrient uptake across the mycobacterial outer envelope. Full article
(This article belongs to the Section Molecular Microbiology and Immunology)
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12 pages, 914 KiB  
Article
Application of X-ray Spectroscopic Techniques to Determine the Inorganic Composition and Sulfur Chemical Speciation of the Amazonian Plant Bixa orellana
by Joselaine Cáceres Gonzalez, Grazieli Simões, Rafael B. Bernini, Lucia H. Coutinho, Cecilia Veronica Nunez, Cristiane S. Ferreira and Gerardo Gerson B. de Souza
Appl. Sci. 2024, 14(17), 7827; https://doi.org/10.3390/app14177827 - 3 Sep 2024
Viewed by 324
Abstract
Bixa orellana is a plant that has a variety of uses, such as applications in the food and cosmetic industries, as well as culinary uses, and body painting for Indigenous people. Despite its versatility, few studies have explored its inorganic composition, and its [...] Read more.
Bixa orellana is a plant that has a variety of uses, such as applications in the food and cosmetic industries, as well as culinary uses, and body painting for Indigenous people. Despite its versatility, few studies have explored its inorganic composition, and its sulfur chemical speciation has only been assessed from the point of view of sulfurous amino acids. Here, we report on the inorganic composition of Bixa orellana fruits, pericarps, and seeds obtained using Wavelength Dispersive X-ray Fluorescence (WD-XRF) and sulfur chemical speciation using X-ray Absorption Near-Edge Structure (XANES). Our results show that the seed is a source of potassium, calcium, magnesium, and phosphorous. But also, the pericarp, which is considered waste, contains a high amount of nutrients. From the XANES measurements, the distribution of the oxidation state of the sulfur atom was obtained, and it was shown that although several oxidation states of sulfur are present, oxidized sulfur (sulfate) is the dominant form of sulfur in all samples. Full article
(This article belongs to the Section Food Science and Technology)
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18 pages, 3024 KiB  
Article
In Silico Analysis: Molecular Characterization and Evolutionary Study of CLCN Gene Family in Buffalo
by Yiheng Fu, Muhammad Farhan Khan, Yingqi Wang, Shakeela Parveen, Mehwish Sultana, Qingyou Liu and Laiba Shafique
Genes 2024, 15(9), 1163; https://doi.org/10.3390/genes15091163 - 3 Sep 2024
Viewed by 126
Abstract
Chloride channels (ClCs) have received global interest due to their significant role in the regulation of ion homeostasis, fluid transport, and electrical excitability of tissues and organs in different mammals and contributing to various functions, such as neuronal signaling, muscle contraction, and regulating [...] Read more.
Chloride channels (ClCs) have received global interest due to their significant role in the regulation of ion homeostasis, fluid transport, and electrical excitability of tissues and organs in different mammals and contributing to various functions, such as neuronal signaling, muscle contraction, and regulating the electrolytes’ balance in kidneys and other organs. In order to define the chloride voltage-gated channel (CLCN) gene family in buffalo, this study used in silico analyses to examine physicochemical properties, evolutionary patterns, and genome-wide identification. We identified eight CLCN genes in buffalo. The ProtParam tool analysis identified a number of important physicochemical properties of these proteins, including hydrophilicity, thermostability, in vitro instability, and basic nature. Based on their evolutionary relationships, a phylogenetic analysis divided the eight discovered genes into three subfamilies. Furthermore, a gene structure analysis, motif patterns, and conserved domains using TBtool demonstrated the significant conservation of this gene family among selected species over the course of evolution. A comparative amino acid analysis using ClustalW revealed similarities and differences between buffalo and cattle CLCN proteins. Three duplicated gene pairs were identified, all of which were segmental duplications except for CLCN4-CLCN5, which was a tandem duplication in buffalo. For each gene pair, the Ka/Ks test ratio findings showed that none of the ratios was more than one, indicating that these proteins were likely subject to positive selection. A synteny analysis confirmed a conserved pattern of genomic blocks between buffalo and cattle. Transcriptional control in cells relies on the binding of transcription factors to specific sites in the genome. The number of transcription factor binding sites (TFBSs) was higher in cattle compared to buffalo. Five main recombination breakpoints were identified at various places in the recombination analysis. The outcomes of our study provide new knowledge about the CLCN gene family in buffalo and open the door for further research on candidate genes in vertebrates through genome-wide studies. Full article
(This article belongs to the Special Issue Buffalo Genetics and Genomics)
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27 pages, 9035 KiB  
Article
Profile of Polyphenols, Fatty Acids, and Terpenes in Henola Hemp Seeds Depending on the Method of Fertilization
by Anna Przybylska-Balcerek, Jakub Frankowski, Małgorzata Graczyk, Grażyna Niedziela, Dominika Sieracka, Stanisław Wacławek, Tereza Hulswit Sázavská, Maciej Buśko, Lidia Szwajkowska-Michałek and Kinga Stuper-Szablewska
Molecules 2024, 29(17), 4178; https://doi.org/10.3390/molecules29174178 - 3 Sep 2024
Viewed by 161
Abstract
Botanical varieties of hemp differ in chemical composition, plant morphology, agronomy, and industrial suitability. Hemp is popular for cultivation for the production of cannabinoid oil, fiber production, biomass, etc. The fertilization process is one of the most important factors affecting the plant, both [...] Read more.
Botanical varieties of hemp differ in chemical composition, plant morphology, agronomy, and industrial suitability. Hemp is popular for cultivation for the production of cannabinoid oil, fiber production, biomass, etc. The fertilization process is one of the most important factors affecting the plant, both its condition and chemical composition. So far, research has been carried out proving that hemp is a valuable source of, among others: fatty acids, amino acids, acids, vitamins, numerous micro- and macroelements, and antioxidant compounds. In this experiment, it was decided to check the possibility of harvesting hemp panicles twice in one year. The purpose of this treatment is to use one plant to produce cannabidiol oil and grain. The main aim of the research was to determine bioactive compounds in hemp seeds and to determine whether the cultivation method affects their content and quantity. Based on the research conducted, it was observed that hemp can be grown in two directions at the same time and harvested twice because its health-promoting properties do not lose their value. It was found that regardless of whether hemp is grown solely for seeds or to obtain essential oils and then seeds, the type of fertilization does not affect the content of phenolic acids (e.g., syringic acid: 69.69–75.14 μg/100 g, vanillic acid: 1.47–1.63 μg/100 g). Based on the conducted research, it was found that essential oils can be obtained from one plant in the summer and seeds from Henola hemp cultivation in the autumn, because such a treatment does not affect the content of the discussed compounds. Full article
(This article belongs to the Section Natural Products Chemistry)
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