Internet of Things and Machine Learning for Healthy Ageing: Identifying the Early Signs of Dementia †
Abstract
:1. Introduction
1.1. Characteristics and Adverse Effects of Dementia
- Anxiety
- Depression
- Hallucinations
- Delusions
- Psychomotor agitation
- Aggression
- Wandering
- Screaming
- Shouting
- Biting
- Spitting
- Sexually inappropriate behaviour
- Sleep disturbances
- Personality change
- Repetitive vocalisation
- Apathy
1.2. IoT and Continuous Monitoring
2. Background and Related Works
2.1. Wearable Sensor-Based Monitoring to Identify the Onset of Cognitive Anomaly
2.2. Remote Monitoring to Identify the Onset of Cognitive Anomaly
2.3. Activity Simulation to Identify the Onset of Dementia
2.4. Machine Learning Approaches to Identify the Onset of Dementia
2.5. Machine Learning Algorithms to Build the Model
- Linear Discriminant Analysis (LDA)
- Logistic Regression
- Naive Bayes
- Feed-Forward neural network (FFNN)
- Support Vector Machine (SVM)
- Ensemble RUSBoost
- K-nearest neighbour (KNN)
- K-fold Cross Validation:
3. Scheme of Identifying the Onset of Dementia
3.1. Identification Method of the Onset of Dementia with IoT
4. Data Analysis and Feature Extraction
4.1. Dataset Overview
4.1.1. The Layout of the IoT Devices
4.1.2. IoT Architecture of CASAS Environment
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4.1.3. Activities of the Participants
4.2. Data Preprocessing
- Cognitively Impaired
- ◦
- Dementia
- ◦
- MCI
- Healthy
- ◦
- Middle age 45–59
- ◦
- Young-old 60–74
- ◦
- Old 75+
- ◦
- Younger adults
- ◦
- Younger adults, English second language
- Unknown
- ◦
- Other medical
- ◦
- At-risk—follow longitudinally
- ◦
- Diagnosis not available
4.3. Feature Extraction from the Dataset
Algorithm 1 Procedure to extract features from the dataset |
Step 1. Start a loop up to the total number of data sample files. For each loop feature will be extracted and will be stored as a row of records. Step 2. Trim the loaded file in each loop to keep the relevant sensor data for the task 1 to 8. Step 2. Calculate the duration of each task (total of eight tasks) and store the record using an inner loop. Step 3. Counting sensor firing events for each relevant sensor (51 sensors) using an inner loop and store the record. Step 4. Repeat the steps (1 to 4) until all the data files are extracted for features. Export the output in a feature matrix table for Machine learning. |
5. Feature Analysis
5.1. Feature Data Preview
- X = the features of each data point
- s = sample standard deviation
- = sum of
- = sample mean
- N = number of records (250 for imbalanced data and 400 for balanced data).
Algorithm 2 Procedure to replace missing values |
Start of Loop, For each missing values of task durations (tDuration_1 to tDuration_8) Step 1. tDuration = Column name of the missing value Step 2. Category = category of the missing value (Cognitively-Impaired or Cognitively-Healthy) Step 3. MaxValue = Maximum value from the set [Category, tDuration] Step 4. Replace the missing value with two times of “MaxValue”.Continue the loop till the last missing value of the task durations. Step 5. Re-calculate the “TotalTime” parameter with the updated values from tDuration_1 to tDuration_8 |
5.2. Feature Ranking
- ‘tDuration_5’
- ‘tDuration_4’
- ‘tDuration_7’
- ‘sM021’
- ‘tDuration_6’
- ‘TotalTime’
- ‘sM005’
- ‘tDuration_2’
- ‘TaskScore’
- ‘tDuration_8’
- ‘tDuration_3’
- ‘tDuration_1’
- ‘Total_sEvents’
6. Model Development and Performance Analysis
6.1. Model Building and Training Performance
6.2. Testing Performance
6.3. Discussion
6.4. Limitation
7. Conclusions
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
References
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No. | Activities | Tag Name |
---|---|---|
1. | Sweep the kitchen and dust the living room. | Task 1 |
2. | Obtain a set of medicines and fill a weekly medicine dispenser. | Task 2 |
3. | Write a birthday card, enclose a check, and address an envelope. | Task 3 |
4. | Find the appropriate DVD and watch the corresponding news clip. | Task 4 |
5. | Obtain a watering can and water all plants in the living space. | Task 5 |
6. | Answer the phone and respond to questions of the video from task 4. | Task 6 |
7. | Prepare a cup of soup using the microwave. | Task 7 |
8. | Pick a complete outfit for an interview from a selection of clothing. | Task 8 |
Cognitively Impaired Class | |||||||||
---|---|---|---|---|---|---|---|---|---|
Model Type | TN | FN | FP | TP | Sensitivity | Specificity | Precision | Accuracy | F-Score |
Coarse Decision Tree | 169 | 25 | 25 | 31 | 55.36% | 87.11% | 55.36% | 80.00% | 67.70% |
Linear Discriminant | 185 | 42 | 9 | 14 | 25.00% | 95.36% | 60.87% | 79.60% | 39.61% |
Logistics Regression | 184 | 39 | 10 | 17 | 30.36% | 94.85% | 62.96% | 80.40% | 45.99% |
Kernel Naïve Bayes | 178 | 18 | 16 | 38 | 67.86% | 91.75% | 70.37% | 86.40% | 78.02% |
Quadratic SVM | 182 | 30 | 12 | 26 | 46.43% | 93.81% | 68.42% | 83.20% | 62.12% |
Cubic KNN | 186 | 39 | 8 | 17 | 30.36% | 95.88% | 68.00% | 81.20% | 46.11% |
Ensemble Bagged Trees | 187 | 30 | 7 | 26 | 46.43% | 96.39% | 78.79% | 85.20% | 62.67% |
Ensemble RUSBoosted | 155 | 14 | 39 | 42 | 75.00% | 79.90% | 51.85% | 78.80% | 77.37% |
FFNN | 175 | 19 | 29 | 177 | 90.31% | 85.78% | 85.92% | 88.00% | 87.99% |
Cognitively Impaired Class (Imbalanced Data) | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
Model Type | TN | FN | FP | TP | Sensitivity | Specificity | Precision | Accuracy | F-Score | Cost |
Fine Decision Tree | 159 | 14 | 35 | 42 | 75.00% | 81.96% | 54.55% | 80.40% | 78.33% | 455 |
Discriminant Linear | 59 | 2 | 135 | 54 | 96.43% | 30.41% | 28.57% | 45.20% | 46.24% | 175 |
Naïve Bayes Kernel | 150 | 11 | 44 | 45 | 80.36% | 77.32% | 50.56% | 78.00% | 78.81% | 264 |
SVM Quadratic | 133 | 21 | 61 | 35 | 62.50% | 68.56% | 36.46% | 67.20% | 65.39% | 481 |
KNN Cubic | 173 | 30 | 21 | 26 | 46.43% | 89.18% | 55.32% | 79.60% | 61.06% | 621 |
Ensemble RUSBoosted | 158 | 14 | 36 | 42 | 75.00% | 81.44% | 53.85% | 80.00% | 78.09% | 456 |
Cognitively Impaired | |||||||||
---|---|---|---|---|---|---|---|---|---|
Model Type | TN | FN | FP | TP | Sensitivity | Specificity | Precision | Accuracy | F-Score |
Fine Decision Tree | 158 | 36 | 24 | 173 | 82.78% | 86.81% | 87.82% | 84.65% | 84.75% |
Linear Discriminant | 147 | 47 | 86 | 111 | 70.25% | 63.09% | 56.35% | 65.98% | 66.48% |
Logistics Regression | 147 | 47 | 81 | 116 | 71.17% | 64.47% | 58.88% | 67.26% | 67.65% |
Kernel Naïve Bayes | 157 | 37 | 52 | 145 | 79.67% | 75.12% | 73.60% | 77.24% | 77.33% |
Fine Gaussian SVM | 144 | 50 | 15 | 182 | 78.45% | 90.57% | 92.39% | 83.38% | 84.07% |
Fine KNN | 149 | 45 | 10 | 187 | 80.60% | 93.71% | 94.92% | 85.93% | 86.66% |
Ensemble Boosted Tree | 174 | 20 | 13 | 184 | 90.20% | 93.05% | 93.40% | 91.56% | 91.60% |
Ensemble RUSBoosted | 155 | 39 | 19 | 178 | 82.03% | 89.08% | 90.36% | 85.17% | 85.41% |
FFNN | 149 | 45 | 51 | 146 | 76.44% | 74.50% | 74.11% | 75.45% | 75.46% |
Cognitively Impaired | |||||||||
---|---|---|---|---|---|---|---|---|---|
Model Type | TN | FN | FP | TP | Sensitivity | Specificity | Precision | Accuracy | F-Score |
Median Tree | 34 | 16 | 0 | 6 | 27.27% | 100.00% | 100.00% | 71.43% | 42.86% |
Kernel Naïve Bayes | 33 | 11 | 1 | 9 | 45.00% | 97.06% | 90.00% | 77.78% | 61.49% |
SVM | 33 | 13 | 1 | 7 | 35.00% | 97.06% | 87.50% | 74.07% | 51.45% |
KNN | 31 | 14 | 3 | 6 | 30.00% | 91.18% | 66.67% | 68.52% | 45.15% |
RUSBoosted Ensemble | 34 | 4 | 0 | 16 | 80.00% | 100.00% | 100.00% | 92.59% | 88.89% |
FFNN | 34 | 0 | 6 | 14 | 100.00% | 85.00% | 70.00% | 88.89% | 91.89% |
Cognitively Impaired | |||||||||
---|---|---|---|---|---|---|---|---|---|
Model Type | TN | FN | FP | TP | Sensitivity | Specificity | Precision | Accuracy | F-Score |
Fine Decision Tree | 31 | 2 | 3 | 18 | 90.00% | 91.18% | 85.71% | 90.74% | 90.58% |
Kernel Naïve Bayes | 29 | 6 | 5 | 14 | 70.00% | 85.29% | 73.68% | 79.63% | 76.89% |
Fine Gaussian SVM | 27 | 1 | 5 | 19 | 95.00% | 84.38% | 79.17% | 88.46% | 89.37% |
Fine KNN | 24 | 1 | 10 | 19 | 95.00% | 70.59% | 65.52% | 79.63% | 80.99% |
Boosted Tree Ensemble | 27 | 0 | 7 | 20 | 100.00% | 79.41% | 74.07% | 87.04% | 88.52% |
RUSBoosted Ensemble | 30 | 4 | 2 | 18 | 81.82% | 93.75% | 90.00% | 88.89% | 87.38% |
FFNN | 28 | 6 | 6 | 14 | 70.00% | 82.35% | 70.00% | 77.78% | 75.68% |
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Ahamed, F.; Shahrestani, S.; Cheung, H. Internet of Things and Machine Learning for Healthy Ageing: Identifying the Early Signs of Dementia. Sensors 2020, 20, 6031. https://doi.org/10.3390/s20216031
Ahamed F, Shahrestani S, Cheung H. Internet of Things and Machine Learning for Healthy Ageing: Identifying the Early Signs of Dementia. Sensors. 2020; 20(21):6031. https://doi.org/10.3390/s20216031
Chicago/Turabian StyleAhamed, Farhad, Seyed Shahrestani, and Hon Cheung. 2020. "Internet of Things and Machine Learning for Healthy Ageing: Identifying the Early Signs of Dementia" Sensors 20, no. 21: 6031. https://doi.org/10.3390/s20216031