Spatiotemporal Patterns in the Distribution of Albacore, Bigeye, Skipjack, and Yellowfin Tuna Species within the Exclusive Economic Zones of Tonga for the Years 2002 to 2018
Abstract
:1. Introduction
2. Materials and Methods
2.1. Study Region
2.2. Fishery Data
2.3. Environmental Data
2.4. Index of Variable Importance
3. Results
3.1. Exploration of the Occurrence
3.2. Exploration of Environmental Variables
3.3. Model Performance
3.4. Standardized Index of Abundance
3.5. Map of Predicted Suitable Habitat
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Species | Forms | Mean RMSE | Mean mae |
---|---|---|---|
Albacore | cpue~s(sst,k = 3) | 11.973 | 8.795 |
cpue~s(sst,k = 3) + s(log_chl,k = 3) | 11.833 | 8.601 | |
cpue~s(sst,k = 3) + s(log_chl,k = 3) + s(sst_grad,k = 3) | 11.814 | 8.572 | |
cpue~s(sst,k = 3) + s(log_chl,k = 3) + s(sst_grad,k = 3) + s(chl_grad,k = 3) | 11.732 | 8.487 | |
cpue~s(sst,k = 3) + s(log_chl,k = 3) + s(sst_grad,k = 3) + s(chl_grad,k = 3) + s(depth,k = 3) | 11.703 | 8.434 | |
cpue~s(sst,k = 3) + s(log_chl,k = 3) + s(sst_grad,k = 3) + s(chl_grad,k = 3) + s(depth,k = 3) + s(month,bs = ‘cc’) | 10.722 | 7.574 | |
cpue~s(sst,k = 3) + s(log_chl,k = 3) + s(sst_grad,k = 3) + s(chl_grad,k = 3) + s(depth,k = 3) + s(month,bs = ‘cc’) + year | 10.293 | 7.213 | |
Bigeye | cpue~s(sst,k = 3) | 2.803 | 1.864 |
cpue~s(sst,k = 3) + s(log_chl,k = 3) | 2.802 | 1.861 | |
cpue~s(sst,k = 3) + s(log_chl,k = 3) + s(sst_grad,k = 3) | 2.803 | 1.862 | |
cpue~s(sst,k = 3) + s(log_chl,k = 3) + s(sst_grad,k = 3) + s(chl_grad,k = 3) | 2.800 | 1.859 | |
cpue~s(sst,k = 3) + s(log_chl,k = 3) + s(sst_grad,k = 3) + s(chl_grad,k = 3) + s(depth,k = 3) | 2.790 | 1.852 | |
cpue~s(sst,k = 3) + s(log_chl,k = 3) + s(sst_grad,k = 3) + s(chl_grad,k = 3) + s(depth,k = 3) + s(month,bs = ‘cc’) | 2.762 | 1.814 | |
cpue~s(sst,k = 3) + s(log_chl,k = 3) + s(sst_grad,k = 3) + s(chl_grad,k = 3) + s(depth,k = 3) + s(month,bs = ‘cc’) + year | 2.709 | 1.748 | |
Skipjack | cpue~s(sst,k = 3) | 0.755 | 0.326 |
cpue~s(sst,k = 3) + s(log_chl,k = 3) | 0.755 | 0.327 | |
cpue~s(sst,k = 3) + s(log_chl,k = 3) + s(sst_grad,k = 3) | 0.756 | 0.327 | |
cpue~s(sst,k = 3) + s(log_chl,k = 3) + s(sst_grad,k = 3) + s(chl_grad,k = 3) | 0.756 | 0.327 | |
cpue~s(sst,k = 3) + s(log_chl,k = 3) + s(sst_grad,k = 3) + s(chl_grad,k = 3) + s(depth,k = 3) | 0.756 | 0.327 | |
cpue~s(sst,k = 3) + s(log_chl,k = 3) + s(sst_grad,k = 3) + s(chl_grad,k = 3) + s(depth,k = 3) + s(month,bs = ‘cc’) | 0.749 | 0.321 | |
cpue~s(sst,k = 3) + s(log_chl,k = 3) + s(sst_grad,k = 3) + s(chl_grad,k = 3) + s(depth,k = 3) + s(month,bs = ‘cc’) + year | 0.740 | 0.288 | |
Yellowfin | cpue~s(sst,k = 3) | 11.326 | 6.998 |
cpue~s(sst,k = 3) + s(log_chl,k = 3) | 11.182 | 6.853 | |
cpue~s(sst,k = 3) + s(log_chl,k = 3) + s(sst_grad,k = 3) | 11.187 | 6.855 | |
cpue~s(sst,k = 3) + s(log_chl,k = 3) + s(sst_grad,k = 3) + s(chl_grad,k = 3) | 11.156 | 6.821 | |
cpue~s(sst,k = 3) + s(log_chl,k = 3) + s(sst_grad,k = 3) + s(chl_grad,k = 3) + s(depth,k = 3) | 11.157 | 6.809 | |
cpue~s(sst,k = 3) + s(log_chl,k = 3) + s(sst_grad,k = 3) + s(chl_grad,k = 3) + s(depth,k = 3) + s(month,bs = ‘cc’) | 10.846 | 6.631 | |
cpue~s(sst,k = 3) + s(log_chl,k = 3) + s(sst_grad,k = 3) + s(chl_grad,k = 3) + s(depth,k = 3) + s(month,bs = ‘cc’) + year | 10.127 | 5.989 |
Species | Variable | Forms | Cum. Dev. Explained |
---|---|---|---|
Albacore | NULL | cpue~1 | |
sst | cpue~s(sst,k = 4) | 1.642 | |
log_chl | cpue~s(sst,k = 4) + s(log_chl,k = 4) | 4.375 | |
sst_grad | cpue~s(sst,k = 4) + s(log_chl,k = 4) + s(sst_grad,k = 4) | 4.823 | |
chl_grad | cpue~s(sst,k = 4) + s(log_chl,k = 4) + s(sst_grad,k = 4) + s(chl_grad,k = 4) | 6.027 | |
depth | cpue~s(sst,k = 4) + s(log_chl,k = 4) + s(sst_grad,k = 4) + s(chl_grad,k = 4) + s(depth,k = 4) | 8.057 | |
month | cpue~s(sst,k = 4) + s(log_chl,k = 4) + s(sst_grad,k =4) + s(chl_grad,k = 4) + s(depth,k = 4) + s(month,bs = ‘cc’) | 20.588 | |
year | cpue~s(sst,k = 4) + s(log_chl,k = 4) + s(sst_grad,k = 4) + s(chl_grad,k =4) +s(depth,k = 4) + s(month,bs = ‘cc’) + year | 27.622 | |
Bigeye | NULL | cpue~1 | |
sst | cpue~s(sst,k = 4) | 2.840 | |
log_chl | cpue~s(sst,k = 4) + s(log_chl, k = 4) | 3.025 | |
sst_grad | cpue~s(sst,k = 4) + s(log_chl,k = 4) + s(sst_grad,k = 4) | 3.047 | |
chl_grad | cpue~s(sst,k = 4) + s(log_chl,k = 4) + s(sst_grad,k = 4) + s(chl_grad,k = 4) | 3.283 | |
depth | cpue~s(sst,k = 4) + s(log_chl,k = 4) + s(sst_grad,k = 4) + s(chl_grad,k = 4) + s(depth,k = 4) | 4.251 | |
month | cpue~s(sst,k = 4) + s(log_chl,k = 4) + s(sst_grad,k =4) + s(chl_grad,k = 4) + s(depth,k = 4) + s(month,bs = ‘cc’) | 6.788 | |
year | cpue~s(sst,k = 4) + s(log_chl,k = 4) + s(sst_grad,k = 4) + s(chl_grad,k =4) + s(depth,k = 4) + s(month,bs = ‘cc’) + year | 12.183 | |
Skipjack | NULL | cpue~1 | |
sst | cpue~s(sst,k = 4) | 2.419 | |
log_chl | cpue~s(sst,k = 4) + s(log_chl, k = 4) | 2.493 | |
sst_grad | cpue~s(sst,k = 4) + s(log_chl,k = 4) + s(sst_grad,k = 4) | 2.495 | |
chl_grad | cpue~s(sst,k = 4) + s(log_chl,k = 4) + s(sst_grad,k = 4) + s(chl_grad,k = 4) | 2.518 | |
depth | cpue~s(sst,k = 4) + s(log_chl,k = 4) + s(sst_grad,k = 4) + s(chl_grad,k = 4) + s(depth,k = 4) | 2.837 | |
month | cpue~s(sst,k = 4) + s(log_chl,k = 4) + s(sst_grad,k = 4) + s(chl_grad,k = 4) + s(depth,k = 4) + s(month,bs = ‘cc’) | 7.568 | |
year | cpue~s(sst,k = 4) +s(log_chl,k = 4) + s(sst_grad,k = 4) + s(chl_grad,k = 4) +s(depth,k = 4) + s(month,bs = ‘cc’) + year | 24.895 | |
Yellowfin | NULL | cpue~1 | |
sst | cpue~s(sst,k = 4) | 1.937 | |
log_chl | cpue~s(sst,k = 4) + s(log_chl, k = 4) | 4.876 | |
sst_grad | cpue~s(sst,k = 4) + s(log_chl,k = 4) + s(sst_grad,k = 4) | 4.916 | |
chl_grad | cpue~s(sst,k = 4) + s(log_chl,k = 4) + s(sst_grad,k = 4) + s(chl_grad,k = 4) | 5.455 | |
depth | cpue~s(sst,k = 4) + s(log_chl,k = 4) + s(sst_grad,k = 4) + s(chl_grad,k = 4) + s(depth,k = 4) | 5.731 | |
month | cpue~s(sst,k = 4) + s(log_chl,k =4) + s(sst_grad,k = 4) + s(chl_grad,k = 4) + s(depth,k = 4) + s(month,bs = ‘cc’) | 10.986 | |
year | cpue~s(sst,k = 4) + s(log_chl,k = 4) + s(sst_grad,k = 4) + s(chl_grad,k = 4) +s(depth,k = 4) + s(month,bs = ‘cc’) + year | 24.287 |
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Vaihola, S.; Yemane, D.; Kininmonth, S. Spatiotemporal Patterns in the Distribution of Albacore, Bigeye, Skipjack, and Yellowfin Tuna Species within the Exclusive Economic Zones of Tonga for the Years 2002 to 2018. Diversity 2023, 15, 1091. https://doi.org/10.3390/d15101091
Vaihola S, Yemane D, Kininmonth S. Spatiotemporal Patterns in the Distribution of Albacore, Bigeye, Skipjack, and Yellowfin Tuna Species within the Exclusive Economic Zones of Tonga for the Years 2002 to 2018. Diversity. 2023; 15(10):1091. https://doi.org/10.3390/d15101091
Chicago/Turabian StyleVaihola, Siosaia, Dawit Yemane, and Stuart Kininmonth. 2023. "Spatiotemporal Patterns in the Distribution of Albacore, Bigeye, Skipjack, and Yellowfin Tuna Species within the Exclusive Economic Zones of Tonga for the Years 2002 to 2018" Diversity 15, no. 10: 1091. https://doi.org/10.3390/d15101091