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Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
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title
Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
(English)
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main subject
N6-methyladenosine-containing RNA binding
2 references
stated in
Gene Ontology release 2020-05-02
Gene Ontology ID
GO:1990247
stated in
GOA release 2020-03-11
YTH N6-methyladenosine RNA binding protein 3
1 reference
stated in
GOA release 2020-03-11
YTH N6-methyladenosine RNA binding protein 2
1 reference
stated in
GOA release 2020-03-11
Methyltransferase like 3
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stated in
GOA release 2020-03-11
author
Schraga Schwartz
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3
object named as
Schraga Schwartz
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Jasmine Jacob-Hirsch
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8
object named as
Jasmine Jacob-Hirsch
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Dan Dominissini
object named as
Dan Dominissini
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1
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Mali Salmon-Divon
object named as
Mali Salmon-Divon
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4
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Gidi Rechavi
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12
object named as
Gideon Rechavi
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Ninette Amariglio
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9
object named as
Ninette Amariglio
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Sivan Osenberg
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6
object named as
Sivan Osenberg
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Sharon Moshitch-Moshkovitz
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2
object named as
Sharon Moshitch-Moshkovitz
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Karen Cesarkas
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7
object named as
Karen Cesarkas
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author name string
Lior Ungar
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5
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Martin Kupiec
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10
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Rotem Sorek
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11
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language of work or name
English
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publication date
10 May 2012
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published in
Nature
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volume
485
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issue
7397
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page(s)
201-6
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cites work
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Control of c-myc mRNA half-life in vitro by a protein capable of binding to a coding region stability determinant
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Precise localization of m6A in Rous sarcoma virus RNA reveals clustering of methylation sites: implications for RNA processing
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Mapping of N6-methyladenosine residues in bovine prolactin mRNA
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12 December 2020
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Purification and cDNA cloning of the AdoMet-binding subunit of the human mRNA (N6-adenosine)-methyltransferase
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The methylated constituents of globin mRNA
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12 December 2020
based on heuristic
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Deciphering the splicing code
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PubMed
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12 December 2020
based on heuristic
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HuR and mRNA stability
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12 December 2020
based on heuristic
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Identification of recognition residues for ligation-based detection and quantitation of pseudouridine and N6-methyladenosine
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PubMed
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO
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PubMed
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Inhibition of in vitro translation by antibodies directed againstN6-methyladenosine
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/22575960
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
HeLa cell RNA (2'-O-methyladenosine-N6-)-methyltransferase specific for the capped 5'-end of messenger RNA
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Nucleotide sequences at the N6-methyladenosine sites of HeLa cell messenger ribonucleic acid
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PubMed
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Induction of sporulation in Saccharomyces cerevisiae leads to the formation of N6-methyladenosine in mRNA: a potential mechanism for the activity of the IME4 gene
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
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12 December 2020
based on heuristic
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Differential expression analysis for sequence count data
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Architectural limits on split genes
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
TopHat: discovering splice junctions with RNA-Seq
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/22575960
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Antibody nucleic acid complexes. Immunospecific retention of N6-methyladenosine-containing transfer ribonucleic acid
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
PeakAnalyzer: genome-wide annotation of chromatin binding and modification loci.
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/22575960
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Position-dependent alternative splicing activity revealed by global profiling of alternative splicing events regulated by PTB.
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Characterization of antibodies specific for N6-methyladenosine and for 7-methylguanosine
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Genomic DNA methylation: the mark and its mediators
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Detecting differential usage of exons from RNA-seq data
1 reference
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Tumor necrosis factor alpha and gamma-interferon enhancement of anti-epidermal growth factor receptor monoclonal antibody binding to human melanoma cells.
1 reference
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/22575960
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Accumulation of spliced avian retrovirus mRNA is inhibited in S-adenosylmethionine-depleted chicken embryo fibroblasts
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Sequences responsible for intracellular localization of beta-actin messenger RNA also affect cell phenotype
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Model-based analysis of ChIP-Seq (MACS)
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
N6-methyladenosine residues in an intron-specific region of prolactin pre-mRNA.
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
MODOMICS: a database of RNA modification pathways. 2008 update
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
N6, O2'-dimethyladenosine a novel methylated ribonucleoside next to the 5' terminal of animal cell and virus mRNAs
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
BEDTools: a flexible suite of utilities for comparing genomic features
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Ensembl BioMarts: a hub for data retrieval across taxonomic space
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Selective elimination of messenger RNA prevents an incidence of untimely meiosis
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identification of methylated nucleosides in messenger RNA from Novikoff hepatoma cells
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Sequence specificity of the human mRNA N6-adenosine methylase in vitro
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Antibody-nucleic acid complexes. Immunospecific recognition of 7-methylguanine- and N6-methyladenine-containing 5'-terminal oligonucleotides of mRNA
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The YTH domain is a novel RNA binding domain
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The UCSC Known Genes
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The intranuclear localization and function of YT521-B is regulated by tyrosine phosphorylation
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Systematic identification of abundant A-to-I editing sites in the human transcriptome
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Drosophila Inducer of MEiosis 4 (IME4) is required for Notch signaling during oogenesis
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Immunospecific retention of oligonucleotides possessing N6-methyladenosine and 7-methylguanosine
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Alternative splicing and evolution: diversification, exon definition and function
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Functions of MDMX in the modulation of the p53-response
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identification of novel transcripts in annotated genomes using RNA-Seq
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Antibodies specific for N6-methyladenosine react with intact snRNPs U2 and U4/U6
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription.
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Interferon-induced enhancement of transforming growth factor-alpha expression in a human breast cancer cell line
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Inhibition of 6-methyladenine formation decreases the translation efficiency of dihydrofolate reductase transcripts.
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
MTA is an Arabidopsis messenger RNA adenosine methylase and interacts with a homolog of a sex-specific splicing factor
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The methylated constituents of L cell messenger RNA: evidence for an unusual cluster at the 5' terminus
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Grand challenge commentary: RNA epigenetics?
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
A quantitative systems approach reveals dynamic control of tRNA modifications during cellular stress
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22575960
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The biosynthesis and functional roles of methylated nucleosides in eukaryotic mRNA
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNATURE11112
retrieved
7 January 2021
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Identifiers
DOI
10.1038/NATURE11112
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1121160
Dimensions Publication ID
1040794705
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Fatcat ID
release_avlvu7ekxrbfrebhk7lang7qsa
0 references
OpenCitations bibliographic resource ID
1121160
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1121160
PubMed publication ID
22575960
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
1121160
ResearchGate publication ID
224939250
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