(Q28476548)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21187895%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

title

A quantitative systems approach reveals dynamic control of tRNA modifications during cellular stress (English)

1 reference

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18 January 2020

1

1 reference

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18 January 2020

Peter Dedon

5

1 reference

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18 January 2020

author name string

Madhu Dyavaiah

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21187895%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Michael S DeMott

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21187895%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Koli Taghizadeh

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21187895%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Thomas J Begley

6

1 reference

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18 January 2020

language of work or name

English

0 references

publication date

16 December 2010

1 reference

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18 January 2020

1 reference

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18 January 2020

volume

6

1 reference

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18 January 2020

issue

12

1 reference

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18 January 2020

page(s)

e1001247

1 reference

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Creative Commons Attribution 4.0 International

18 January 2020

copyright license

start time

16 December 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

The universal YrdC/Sua5 family is required for the formation of threonylcarbamoyladenosine in tRNA.

1 reference

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Identification of yeast tRNA Um(44) 2'-O-methyltransferase (Trm44) and demonstration of a Trm44 role in sustaining levels of specific tRNA(Ser) species

19 March 2017

1 reference

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Compilation of tRNA sequences and sequences of tRNA genes

19 March 2017

1 reference

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Novel methyltransferase for modified uridine residues at the wobble position of tRNA.

19 March 2017

1 reference

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Transcriptional response of Saccharomyces cerevisiae to DNA-damaging agents does not identify the genes that protect against these agents

19 March 2017

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Trm7p catalyses the formation of two 2'-O-methylriboses in yeast tRNA anticodon loop

19 March 2017

1 reference

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Improvement of reading frame maintenance is a common function for several tRNA modifications

19 March 2017

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A primordial tRNA modification required for the evolution of life?

19 March 2017

1 reference

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Multisite-specific tRNA:m5C-methyltransferase (Trm4) in yeast Saccharomyces cerevisiae: identification of the gene and substrate specificity of the enzyme

19 March 2017

1 reference

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Tad1p, a yeast tRNA-specific adenosine deaminase, is related to the mammalian pre-mRNA editing enzymes ADAR1 and ADAR2.

19 March 2017

1 reference

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Isolation and characterization of the TRM1 locus, a gene essential for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNA in Saccharomyces cerevisiae.

19 March 2017

1 reference

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Pairing properties of the methylester of 5-carboxymethyl uridine in the wobble position of yeast tRNAArg3

19 March 2017

1 reference

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tRNA's wobble decoding of the genome: 40 years of modification

19 March 2017

1 reference

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tRNA stabilization by modified nucleotides

7 April 2017

1 reference

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Innate immune and chemically triggered oxidative stress modifies translational fidelity.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3002981

A genome-wide screen in Saccharomyces cerevisiae reveals pathways affected by arsenic toxicity

29 September 2017

1 reference

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Thiolation controls cytoplasmic tRNA stability and acts as a negative determinant for tRNA editing in mitochondria.

29 September 2017

1 reference

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MODOMICS: a database of RNA modification pathways. 2008 update

29 September 2017

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Systems based mapping demonstrates that recovery from alkylation damage requires DNA repair, RNA processing, and translation associated networks

29 September 2017

1 reference

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Mass spectrometric identification and characterization of RNA-modifying enzymes

29 September 2017

1 reference

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Mass spectrometry of RNA: linking the genome to the proteome

29 September 2017

1 reference

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Study of the mass spectrometric fragmentation of pseudouridine: comparison of fragmentation data obtained by matrix-assisted laser desorption/ionisation post-source decay, electrospray ion trap multistage mass spectrometry, and by a method [...]

29 September 2017

1 reference

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Genome-wide responses to DNA-damaging agents.

29 September 2017

1 reference

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Role of oxidative damage in the genotoxicity of arsenic

29 September 2017

1 reference

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Chemical basis of inflammation-induced carcinogenesis

29 September 2017

1 reference

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Damage recovery pathways in Saccharomyces cerevisiae revealed by genomic phenotyping and interactome mapping.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3002981

Novel products generated from 2'-deoxyguanosine by hypochlorous acid or a myeloperoxidase-H2O2-Cl- system: identification of diimino-imidazole and amino-imidazolone nucleosides

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3002981

Recent advances in arsenic carcinogenesis: modes of action, animal model systems, and methylated arsenic metabolites

29 September 2017

1 reference

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Biomarkers of myeloperoxidase-derived hypochlorous acid

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3002981

Transfer RNA modification: influence on translational frameshifting and metabolism

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3002981

The RNA Modification Database: 1999 update

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3002981

Inside the neutrophil phagosome: oxidants, myeloperoxidase, and bacterial killing.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3002981

The importance of being modified: roles of modified nucleosides and Mg2+ in RNA structure and function.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3002981

Thiolation of transfer RNA in Escherichia coli varies with growth rate

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3002981

Trm9-catalyzed tRNA modifications link translation to the DNA damage response

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3002981

Replication stress checkpoint signaling controls tRNA gene transcription.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3002981

Rapid tRNA decay can result from lack of nonessential modifications.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3002981

Hot spots for modulating toxicity identified by genomic phenotyping and localization mapping

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3002981

Accurate translation of the genetic code depends on tRNA modified nucleosides.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3002981

Genes required for ionizing radiation resistance in yeast

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3002981

A violation of the Swain-Scott principle, and not SN1 versus SN2 reaction mechanisms, explains why carcinogenic alkylating agents can form different proportions of adducts at oxygen versus nitrogen in DNA.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3002981

Arsenic speciation of arsine-exposed blood samples by high-performance liquid chromatography-inductively coupled plasma mass spectrometry and as-adduct, a possible indicator of AsH3 exposure

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21187895

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Stressing out over tRNA cleavage

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21187895

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Analysis of RNA hydrolyzates by liquid chromatography-mass spectrometry

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21187895

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PGEN.1001247

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21187895%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21187895%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

PubMed publication ID

21187895

2 references