Jump to content

Crescentin: Difference between revisions

From Wikipedia, the free encyclopedia
Browse history interactively
← Previous edit
Content deleted Content added
VisualWikitext
→Protein structure: again Cyro > Cryo
 
(45 intermediate revisions by 19 users not shown)
Line 1: Line 1:
{{Short description|Bacterial cytoskeletal protein}}
[[Image:Crescentin.jpg|thumb|300px|Space-filling model and ribbon diagram of ''Caulobacter vibrioides'' crescentin, created from homology model available at [http://modbase.compbio.ucsf.edu/modbase-cgi-new/model_details.cgi?queryfile=1156808221_140&searchmode=default&filtermode=on&displaymode=moddetail&seq_id=&model_id= Q6IET3]]]
{{Pfam box

|Symbol=Crescentin
⚫
'''Crescentin''' is a [[protein]] which is a [[bacterial]] relative of the [[intermediate filaments]] found in [[eukaryotic cells]]. Just as [[tubulins]] and [[actin]]s, the other major [[Cytoskeleton|cytoskeletal proteins]], have [[prokaryotic]] [[Homology (biology)|homologs]] in, respectively, the [[FtsZ]] and [[MreB]] proteins, intermediate filaments are linked to the crescentin protein.
|Pfam=PF19220
|InterPro=IPR043652
}}
{{Infobox nonhuman protein
|Symbol=CreS
|Name=Intermediate filament-like cell shape determinant CreS
|AltSymbols=ParA
|UniProt=Q6IET3
|Organism=Caulobacter vibrioides
}}
⚫
'''Crescentin''' is a [[protein]] which is a [[bacterial]] relative of the [[intermediate filaments]] found in [[eukaryotic cells]]. Just as [[tubulins]] and [[actin]]s, the other major [[Cytoskeleton|cytoskeletal proteins]], have [[prokaryotic]] homologs in, respectively, the [[FtsZ]] and [[MreB]] proteins, intermediate filaments are linked to the crescentin protein. Some of its [[Homology (biology)|homologs]] are erroneously labelled '''Chromosome segregation protein ParA'''. This [[protein family]] is found in ''[[Caulobacter]]'' and ''[[Methylobacterium]]''.


==Role in cell shape==
==Role in cell shape==
Crescentin was recently discovered in the prokaryote ''[[Caulobacter crescentus]]'', an aquatic bacterium which uses its [[crescent]]-shaped cells for enhanced motility.<ref>Biosciences, Eurekah.com, 2000-2005. Accessed 19 February. 2006 through PubMed.</ref> The crescentin protein is located on the [[wiktionary:Concave|concave]] face of these cells and appears to be necessary for their shape, as [[mutants]] lacking the protein form rod-shaped cells.<ref>{{cite journal |author=Møller-Jensen J, Löwe J |title=Increasing complexity of the bacterial cytoskeleton |journal=Curr. Opin. Cell Biol. |volume=17 |issue=1 |pages=75–81 |year=2005 |month=February |pmid=15661522 |doi=10.1016/j.ceb.2004.11.002 |url=}}</ref> To influence the shape of the ''Caulobacter'' cells, the [[helices]] of crescentin filaments associate with the [[cytoplasmic]] side of the [[cell membrane]] on one lateral side of the cell. This induces a curved cell shape in younger cells, which are shorter than the helical pitch of crescentin, but induces a spiral shape in older, longer cells.<ref>{{cite journal |author=Margolin W |title=Bacterial shape: concave coiled coils curve caulobacter |journal=Curr. Biol. |volume=14 |issue=6 |pages=R242–4 |year=2004 |month=March |pmid=15043836 |doi=10.1016/j.cub.2004.02.057 |url=}}</ref>
Crescentin was discovered in 2009 by [[Christine Jacobs-Wagner]] in ''[[Caulobacter crescentus]]'' (now ''vibrioides''), an aquatic bacterium which uses its [[crescent]]-shaped cells for enhanced motility.<ref name="pmid19417107">{{cite journal | vauthors = Charbon G, Cabeen MT, Jacobs-Wagner C | title = Bacterial intermediate filaments: in vivo assembly, organization, and dynamics of crescentin | journal = Genes & Development | volume = 23 | issue = 9 | pages = 1131–44 | date = May 2009 | pmid = 19417107 | pmc = 2682956 | doi = 10.1101/gad.1795509 }}</ref> The crescentin protein is located on the [[wiktionary:Concave|concave]] face of these cells and appears to be necessary for their shape, as [[mutants]] lacking the protein form rod-shaped cells.<ref>{{cite journal | vauthors = Møller-Jensen J, Löwe J | title = Increasing complexity of the bacterial cytoskeleton | journal = Current Opinion in Cell Biology | volume = 17 | issue = 1 | pages = 75–81 | date = February 2005 | pmid = 15661522 | doi = 10.1016/j.ceb.2004.11.002 }}</ref> To influence the shape of the ''Caulobacter'' cells, the [[helices]] of crescentin filaments associate with the [[cytoplasmic]] side of the [[cell membrane]] on one lateral side of the cell. This induces a curved cell shape in younger cells, which are shorter than the helical pitch of crescentin, but induces a spiral shape in older, longer cells.<ref>{{cite journal | vauthors = Margolin W | title = Bacterial shape: concave coiled coils curve caulobacter | journal = Current Biology | volume = 14 | issue = 6 | pages = R242-4 | date = March 2004 | pmid = 15043836 | doi = 10.1016/j.cub.2004.02.057 | s2cid = 37470451 | doi-access = free | bibcode = 2004CBio...14.R242M }}</ref>


==Protein structure==
==Protein structure==
Like eukaryotic intermediate filaments, crescentin organizes into filaments and is present in a helical structure in the cell. Crescentin is necessary for both shapes of the ''Caulobacter'' prokaryote (vibroid/crescent-shape and helical shape, which it may adopt after a long stationary phase). The crescentin protein has 430 residues; its sequence mostly consists of a pattern of 7 repeated residues which form a coiled-coil structure. The [[DNA]] sequence of the protein has sections very similar to the eukaryotic [[keratin]] and [[lamin]] proteins, mostly involving the coiled-coil structure. Researchers Ausmees et al. recently proved that, like animal intermediate filament proteins, crescentin has a central rod made up of four coiled-coil segments.<ref name="Ausmees, N. et al.">{{cite journal |author=Ausmees N, Kuhn JR, Jacobs-Wagner C |title=The bacterial cytoskeleton: an intermediate filament-like function in cell shape |journal=Cell |volume=115 |issue=6 |pages=705–13 |year=2003 |month=December |pmid=14675535 |doi= |url=}}</ref> Both intermediate filament and crescentin proteins have a primary sequence including four α-helical segments along with non-α-helical linker domains. An important difference between crescentin and animal intermediate filament proteins is that crescentin lacks certain consensus sequence elements at the ends of the rod domain which are conserved in animal lamin and keratin proteins.<ref>{{cite journal |author=Herrmann H, Aebi U |title=Intermediate filaments: molecular structure, assembly mechanism, and integration into functionally distinct intracellular Scaffolds |journal=Annu. Rev. Biochem. |volume=73 |issue= |pages=749–89 |year=2004 |pmid=15189158 |doi=10.1146/annurev.biochem.73.011303.073823 |url=}}</ref>
Like eukaryotic intermediate filaments, crescentin organizes into filaments and is present in a helical structure in the cell. Crescentin is necessary for both shapes of the ''Caulobacter'' prokaryote (vibroid/crescent-shape and helical shape, which it may adopt after a long stationary phase). The crescentin protein has 430 residues; its sequence mostly consists of a pattern of 7 repeated residues which form a coiled-coil structure. The [[DNA]] sequence of the protein has sections very similar to the eukaryotic [[keratin]] and [[lamin]] proteins, mostly involving the coiled-coil structure. Ausmees et al. (2003) proved that, like animal intermediate filament proteins, crescentin has a central rod made up of four coiled-coil segments.<ref name="AusmeesKuhn2003">{{cite journal | vauthors = Ausmees N, Kuhn JR, Jacobs-Wagner C | title = The bacterial cytoskeleton: an intermediate filament-like function in cell shape | journal = Cell | volume = 115 | issue = 6 | pages = 705–13 | date = December 2003 | pmid = 14675535 | doi = 10.1016/S0092-8674(03)00935-8 | s2cid = 14459851 | doi-access = free }}</ref> Both intermediate filament and crescentin proteins have a primary sequence including four α-helical segments along with non-α-helical linker domains. An important difference between crescentin and animal intermediate filament proteins is that crescentin lacks certain consensus sequence elements at the ends of the rod domain which are conserved in animal lamin and keratin proteins.<ref>{{cite journal | vauthors = Herrmann H, Aebi U | title = Intermediate filaments: molecular structure, assembly mechanism, and integration into functionally distinct intracellular Scaffolds | journal = Annual Review of Biochemistry | volume = 73 | pages = 749–89 | year = 2004 | pmid = 15189158 | doi = 10.1146/annurev.biochem.73.011303.073823 }}</ref>

The protein has been divided into a few subdomains organized similarly to eukaryotic IF proteins.<ref>{{cite journal |last1=Cabeen |first1=MT |last2=Herrmann |first2=H |last3=Jacobs-Wagner |first3=C |title=The domain organization of the bacterial intermediate filament-like protein crescentin is important for assembly and function. |journal=Cytoskeleton |date=April 2011 |volume=68 |issue=4 |pages=205–19 |doi=10.1002/cm.20505 |pmid=21360832 |pmc=3087291}}</ref> Not every researcher is convinced that it is a homolog of intermediate filaments, suggesting instead that the similarity might have arisen via convergent evolution.<ref>{{cite journal |last1=Kollmar |first1=M |title=Polyphyly of nuclear lamin genes indicates an early eukaryotic origin of the metazoan-type intermediate filament proteins. |journal=Scientific Reports |date=29 May 2015 |volume=5 |pages=10652 |doi=10.1038/srep10652 |pmid=26024016 |pmc=4448529|bibcode=2015NatSR...510652K }}</ref> (Indeed, the Cryo-EM structure of CreS does not display the proposed eukaryotic-like interruption in the rod; see next paragraph.)

A number of [[Cryo-EM]] structures of crescentin were published in late 2023. The researchers used a [[nanobody]] that tags onto one specific part of the filament, so that it's easier to tell where each unit of the filament begins and ends. Two chains of the crescentin molecule pair together into a dimeric coil. Two coils come together side-by-side into a strand. Each strand is paired at its head and tail by another strand, so that it continues like a chain. Two chains of strands pair together side-by-side into a filament. Like eukaryotic intermediate filamenets, the CreS filament is octameric and lacks overall polarity. However, CreS does not show a linker domain in the middle but instead presents as a continuous rod.<ref>{{cite journal |last1=Liu |first1=Y |last2=van den Ent |first2=F |last3=Löwe |first3=J |title=Filament structure and subcellular organization of the bacterial intermediate filament-like protein crescentin. |journal=Proceedings of the National Academy of Sciences of the United States of America |date=13 February 2024 |volume=121 |issue=7 |pages=e2309984121 |doi=10.1073/pnas.2309984121 |pmid=38324567 |pmc=10873595}}</ref>


==Assembly of filaments==
==Assembly of filaments==
Eukaryotic intermediate filament proteins assemble into filaments of 8-15 nm within the cell without the need for energy input, that is, no need for [[Adenosine triphosphate|ATP]] or [[Guanosine triphosphate|GTP]]. Ausmees et al. continued their crescentin research by testing whether the protein could assemble into filaments in this manner ''[[in vitro]]''. They found that crescentin proteins were indeed able to form filaments about 10 nm wide, and that some of these filaments organized laterally into bundles, just as eukaryotic intermediate filaments do.<ref name="Ausmees, N. et al.">Ausmees, N. et al. “The bacterial cytoskeleton: an intermediate filament-like function in cell shape.” ''Cell''. 2003 12 December;115(6):705-13.</ref> The similarity of crescentin protein to intermediate filament proteins suggests an [[evolutionary]] linkage between these two cytoskeletal proteins.
Eukaryotic intermediate filament proteins assemble into filaments of 8–15&nbsp;nm within the cell without the need for energy input, that is, no need for [[Adenosine triphosphate|ATP]] or [[Guanosine triphosphate|GTP]]. Ausmees et al. continued their crescentin research by testing whether the protein could assemble into filaments in this manner ''[[in vitro]]''. They found that crescentin proteins were indeed able to form filaments about 10&nbsp;nm wide, and that some of these filaments organized laterally into bundles, just as eukaryotic intermediate filaments do.<ref name="AusmeesKuhn2003"/> The similarity of crescentin protein to intermediate filament proteins suggests an [[evolutionary]] linkage between these two cytoskeletal proteins.


Like eukaryotic intermediate filaments, the filament built from crescentin is elastic. Individual proteins dissociate slowly, making the structure somewhat stiff and slow to remodel. Strain does not induce hardening of the structure, unlike eukaryotic IFs that do.<ref>{{cite journal | vauthors = Esue O, Rupprecht L, Sun SX, Wirtz D |author3-link=Sean X. Sun | title = Dynamics of the bacterial intermediate filament crescentin in vitro and in vivo | journal = PLOS ONE | volume = 5 | issue = 1 | pages = e8855 | date = January 2010 | pmid = 20140233 | pmc = 2816638 | doi = 10.1371/journal.pone.0008855 | bibcode = 2010PLoSO...5.8855E | doi-access = free }}</ref>
⚫
==References==

⚫
== References ==
<!--See [[Wikipedia:Footnotes]] for an explanation of how to generate footnotes using the <ref(erences/)> tags-->
<!--See [[Wikipedia:Footnotes]] for an explanation of how to generate footnotes using the <ref(erences/)> tags-->
{{reflist}}
<references/>


{{Cytoskeletal Proteins}}
{{Cytoskeletal Proteins}}
⚫
[[Category:Cytoskeleton]]


⚫
[[Category:Cytoskeleton]]
[[it:Crescentina (proteina)]]
[[Category:Bacterial proteins]]
[[ru:Кресцентин]]
[[uk:Кресцентин]]

Latest revision as of 20:08, 24 November 2024

Crescentin
Identifiers
SymbolCrescentin
PfamPF19220
InterProIPR043652
Available protein structures:
Pfam  structures / ECOD  
PDBRCSB PDB; PDBe; PDBj
PDBsumstructure summary
Intermediate filament-like cell shape determinant CreS
Identifiers
OrganismCaulobacter vibrioides
SymbolCreS
Alt. symbolsParA
UniProtQ6IET3
Search for
StructuresSwiss-model
DomainsInterPro

Crescentin is a protein which is a bacterial relative of the intermediate filaments found in eukaryotic cells. Just as tubulins and actins, the other major cytoskeletal proteins, have prokaryotic homologs in, respectively, the FtsZ and MreB proteins, intermediate filaments are linked to the crescentin protein. Some of its homologs are erroneously labelled Chromosome segregation protein ParA. This protein family is found in Caulobacter and Methylobacterium.

Role in cell shape

[edit]

Crescentin was discovered in 2009 by Christine Jacobs-Wagner in Caulobacter crescentus (now vibrioides), an aquatic bacterium which uses its crescent-shaped cells for enhanced motility.[1] The crescentin protein is located on the concave face of these cells and appears to be necessary for their shape, as mutants lacking the protein form rod-shaped cells.[2] To influence the shape of the Caulobacter cells, the helices of crescentin filaments associate with the cytoplasmic side of the cell membrane on one lateral side of the cell. This induces a curved cell shape in younger cells, which are shorter than the helical pitch of crescentin, but induces a spiral shape in older, longer cells.[3]

Protein structure

[edit]

Like eukaryotic intermediate filaments, crescentin organizes into filaments and is present in a helical structure in the cell. Crescentin is necessary for both shapes of the Caulobacter prokaryote (vibroid/crescent-shape and helical shape, which it may adopt after a long stationary phase). The crescentin protein has 430 residues; its sequence mostly consists of a pattern of 7 repeated residues which form a coiled-coil structure. The DNA sequence of the protein has sections very similar to the eukaryotic keratin and lamin proteins, mostly involving the coiled-coil structure. Ausmees et al. (2003) proved that, like animal intermediate filament proteins, crescentin has a central rod made up of four coiled-coil segments.[4] Both intermediate filament and crescentin proteins have a primary sequence including four α-helical segments along with non-α-helical linker domains. An important difference between crescentin and animal intermediate filament proteins is that crescentin lacks certain consensus sequence elements at the ends of the rod domain which are conserved in animal lamin and keratin proteins.[5]

The protein has been divided into a few subdomains organized similarly to eukaryotic IF proteins.[6] Not every researcher is convinced that it is a homolog of intermediate filaments, suggesting instead that the similarity might have arisen via convergent evolution.[7] (Indeed, the Cryo-EM structure of CreS does not display the proposed eukaryotic-like interruption in the rod; see next paragraph.)

A number of Cryo-EM structures of crescentin were published in late 2023. The researchers used a nanobody that tags onto one specific part of the filament, so that it's easier to tell where each unit of the filament begins and ends. Two chains of the crescentin molecule pair together into a dimeric coil. Two coils come together side-by-side into a strand. Each strand is paired at its head and tail by another strand, so that it continues like a chain. Two chains of strands pair together side-by-side into a filament. Like eukaryotic intermediate filamenets, the CreS filament is octameric and lacks overall polarity. However, CreS does not show a linker domain in the middle but instead presents as a continuous rod.[8]

Assembly of filaments

[edit]

Eukaryotic intermediate filament proteins assemble into filaments of 8–15 nm within the cell without the need for energy input, that is, no need for ATP or GTP. Ausmees et al. continued their crescentin research by testing whether the protein could assemble into filaments in this manner in vitro. They found that crescentin proteins were indeed able to form filaments about 10 nm wide, and that some of these filaments organized laterally into bundles, just as eukaryotic intermediate filaments do.[4] The similarity of crescentin protein to intermediate filament proteins suggests an evolutionary linkage between these two cytoskeletal proteins.

Like eukaryotic intermediate filaments, the filament built from crescentin is elastic. Individual proteins dissociate slowly, making the structure somewhat stiff and slow to remodel. Strain does not induce hardening of the structure, unlike eukaryotic IFs that do.[9]

References

[edit]
  1. ^ Charbon G, Cabeen MT, Jacobs-Wagner C (May 2009). "Bacterial intermediate filaments: in vivo assembly, organization, and dynamics of crescentin". Genes & Development. 23 (9): 1131–44. doi:10.1101/gad.1795509. PMC 2682956. PMID 19417107.
  2. ^ Møller-Jensen J, Löwe J (February 2005). "Increasing complexity of the bacterial cytoskeleton". Current Opinion in Cell Biology. 17 (1): 75–81. doi:10.1016/j.ceb.2004.11.002. PMID 15661522.
  3. ^ Margolin W (March 2004). "Bacterial shape: concave coiled coils curve caulobacter". Current Biology. 14 (6): R242-4. Bibcode:2004CBio...14.R242M. doi:10.1016/j.cub.2004.02.057. PMID 15043836. S2CID 37470451.
  4. ^ a b Ausmees N, Kuhn JR, Jacobs-Wagner C (December 2003). "The bacterial cytoskeleton: an intermediate filament-like function in cell shape". Cell. 115 (6): 705–13. doi:10.1016/S0092-8674(03)00935-8. PMID 14675535. S2CID 14459851.
  5. ^ Herrmann H, Aebi U (2004). "Intermediate filaments: molecular structure, assembly mechanism, and integration into functionally distinct intracellular Scaffolds". Annual Review of Biochemistry. 73: 749–89. doi:10.1146/annurev.biochem.73.011303.073823. PMID 15189158.
  6. ^ Cabeen, MT; Herrmann, H; Jacobs-Wagner, C (April 2011). "The domain organization of the bacterial intermediate filament-like protein crescentin is important for assembly and function". Cytoskeleton. 68 (4): 205–19. doi:10.1002/cm.20505. PMC 3087291. PMID 21360832.
  7. ^ Kollmar, M (29 May 2015). "Polyphyly of nuclear lamin genes indicates an early eukaryotic origin of the metazoan-type intermediate filament proteins". Scientific Reports. 5: 10652. Bibcode:2015NatSR...510652K. doi:10.1038/srep10652. PMC 4448529. PMID 26024016.
  8. ^ Liu, Y; van den Ent, F; Löwe, J (13 February 2024). "Filament structure and subcellular organization of the bacterial intermediate filament-like protein crescentin". Proceedings of the National Academy of Sciences of the United States of America. 121 (7): e2309984121. doi:10.1073/pnas.2309984121. PMC 10873595. PMID 38324567.
  9. ^ Esue O, Rupprecht L, Sun SX, Wirtz D (January 2010). "Dynamics of the bacterial intermediate filament crescentin in vitro and in vivo". PLOS ONE. 5 (1): e8855. Bibcode:2010PLoSO...5.8855E. doi:10.1371/journal.pone.0008855. PMC 2816638. PMID 20140233.
Retrieved from "https://en.wikipedia.org/w/index.php?title=Crescentin&oldid=1259366464"