Elucidating the folding problem of helical peptides using empirical parameters (Q52376869)

30 April 2018

http://europepmc.org/abstract/MED/7664054

title

Elucidating the folding problem of helical peptides using empirical parameters (English)

1 reference

https://api.crossref.org/works/10.1038/NSB0694-399

protein secondary structure

29 July 2024

main subject

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A7664054

29 July 2024

protein folding

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A7664054

29 July 2024

author name string

V. Muñoz

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A7664054

29 July 2024

L. Serrano

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A7664054

29 July 2024

language of work or name

English

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=7664054

29 July 2024

publication date

1 June 1994

1 reference

30 April 2018

http://europepmc.org/abstract/MED/7664054

full work available at URL

http://www.nature.com/articles/nsb0694-399.pdf

file format

Portable Document Format

1 reference

https://api.crossref.org/works/10.1038/NSB0694-399

http://www.nature.com/articles/nsb0694-399

29 July 2024

1 reference

https://api.crossref.org/works/10.1038/NSB0694-399

Nature structural biology

29 July 2024

published in

1 reference

30 April 2018

http://europepmc.org/abstract/MED/7664054

volume

1

1 reference

30 April 2018

http://europepmc.org/abstract/MED/7664054

issue

6

1 reference

30 April 2018

http://europepmc.org/abstract/MED/7664054

page(s)

399-409

1 reference

30 April 2018

http://europepmc.org/abstract/MED/7664054

cites work

Pathways of protein folding

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Peptide conformation and protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Capping and alpha-helix stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Folding of peptide fragments comprising the complete sequence of proteins. Models for initiation of protein folding. I. Myohemerythrin

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Relative helix-forming tendencies of nonpolar amino acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Large differences in the helix propensities of alanine and glycine

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Signal transduction in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

1 H NMR and CD evidence of the folding of the isolated ribonuclease 50-61 fragment

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Tests of the helix dipole model for stabilization of α-helices

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

The folding of an enzyme. VI. The folding pathway of barnase: comparison with theoretical models

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Theory of the Phase Transition between Helix and Random Coil in Polypeptide Chains

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Physical reasons for secondary structure stability: alpha-helices in short peptides

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

A theory of protein molecule self-organization. IV. Helical and irregular local structures of unfolded protein chains

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

The helix-coil transition in heterogeneous peptides with specific side-chain interactions: Theory and comparison with CD spectral data

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

A molecular thermodynamic approach to predict the secondary structure of homopolypeptides in aqueous systems

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Single-residue substitution in homopolypeptides: perturbative helix-coil theory at a single site

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Kinematics and thermodynamics of a folding heteropolymer

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Residue helix parameters obtained from dichroic analysis of peptides of defined sequence.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Alpha-helix stability in proteins. I. Empirical correlations concerning substitution of side-chains at the N and C-caps and the replacement of alanine by glycine or serine at solvent-exposed surfaces

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Analysis of the interaction between charged side chains and the alpha-helix dipole using designed thermostable mutants of phage T4 lysozyme

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Dissection of helix capping in T4 lysozyme by structural and thermodynamic analysis of six amino acid substitutions at Thr 59.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Histidine residues at the N- and C-termini of alpha-helices: perturbed pKas and protein stability

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Alpha-helix stability in proteins. II. Factors that influence stability at an internal position

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Structural basis of amino acid alpha helix propensity

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

1H-NMR assignment and folding of the isolated ribonuclease 21-42 fragment

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Folding of a peptide corresponding to the alpha-helix in bovine pancreatic trypsin inhibitor

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

The homologous angiogenin and ribonuclease N-terminal fragments fold into very similar helices when isolated

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Helix-coil transition of the isolated amino terminus of ribonuclease

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

CD and 1H-NMR studies on the conformational properties of peptide fragments from the C-terminal domain of thermolysin.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Peptide models of protein folding initiation sites. 2. The G-H turn region of myoglobin acts as a helix stop signal

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Peptide models of protein folding initiation sites. 3. The G-H helical hairpin of myoglobin

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

NMR and circular dichroic studies on the solution conformation of a synthetic peptide derived from the calmodulin-binding domain of Bordetella pertussis adenylate cyclase

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Conformation of uteroglobin fragments.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

An N-terminal fragment of barnase has residual helical structure similar to that in a refolding intermediate

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Conformations in solution of angiotensin II, and its 1-7 and 1-6 fragments

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Residual helical structure in the C-terminal fragment of cytochrome c

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Stabilization of alpha-helix in C-terminal fragments of neuropeptide Y

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

The contribution of helical potential to the in vitro receptor binding activity of a neuropeptide Y N-terminal deletion fragment.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Peptide models of protein folding initiation sites. 1. Secondary structure formation by peptides corresponding to the G- and H-helices of myoglobin

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Effect of trifluoroethanol on protein secondary structure: an NMR and CD study using a synthetic actin peptide

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Protein engineering of cytochrome c by semisynthesis: substitutions at glutamic acid 66.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Effect of the substitution Ala----Gly at each of five residue positions in the C-peptide helix

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Unusually stable helix formation in short alanine-based peptides

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Further studies of the helix dipole model: effects of a free alpha-NH3+ or alpha-COO- group on helix stability

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Positional independence and additivity of amino acid replacements on helix stability in monomeric peptides

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Effect of central-residue replacements on the helical stability of a monomeric peptide

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Side chain contributions to the stability of alpha-helical structure in peptides

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Side-chain interactions in the C-peptide helix: Phe 8 ... His 12+

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Effect of amino acid ion pairs on peptide helicity

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Straight-chain non-polar amino acids are good helix-formers in water.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Proline for alanine substitutions in the C-peptide helix of ribonuclease A.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Parameters of helix-coil transition theory for alanine-based peptides of varying chain lengths in water

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Position-dependent stabilizing effects in .alpha.-helices: N-terminal capping in synthetic model peptides

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

The contribution of residue ion pairs to the helical stability of a model peptide

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Capping interactions in isolated alpha helices: position-dependent substitution effects and structure of a serine-capped peptide helix

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Effect of a single aspartate on helix stability at different positions in a neutral alanine-based peptide

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Helical peptides with three pairs of Asp-Arg and Glu-Arg residues in different orientations and spacings

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Effect of end group blockage on the properties of a class A amphipathic helical peptide

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Stabilization of alpha-helical structures in short peptides via end capping

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Aromatic side-chain contribution to far-ultraviolet circular dichroism of helical peptides and its effect on measurement of helix propensities

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

A single-stranded amphipathic alpha-helix in aqueous solution: design, structural characterization, and its application for determining alpha-helical propensities of amino acids

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

A thermodynamic scale for the helix-forming tendencies of the commonly occurring amino acids

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Calorimetric determination of the enthalpy change for the alpha-helix to coil transition of an alanine peptide in water

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Prediction of the thermodynamics of protein unfolding: the helix-coil transition of poly(L-alanine).

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Extracting information on folding from the amino acid sequence: accurate predictions for protein regions with preferred conformation in the absence of tertiary interactions

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Amino acid preferences for specific locations at the ends of alpha helices

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Helix stop signals in proteins and peptides: the capping box

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Determination of the helix and beta form of proteins in aqueous solution by circular dichroism.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Helix propagation in trifluoroethanol solutions

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Periodic properties of proton conformational shifts in isolated protein helices. An experimental study

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Structure of ubiquitin refined at 1.8 A resolution

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Structure of bacteriophage T4 lysozyme refined at 1.7 A resolution

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

The ras protein family: evolutionary tree and role of conserved amino acids

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

A novel, highly stable fold of the immunoglobulin binding domain of streptococcal protein G

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

Kinetics of amide proton exchange in helical peptides of varying chain lengths. Interpretation by the Lifson-Roig equation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

X-ray analysis of ferredoxin from Spirulina platensis. II. Chelate structure of active center

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNSB0694-399

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NSB0694-399

1 reference

30 April 2018

http://europepmc.org/abstract/MED/7664054

1 reference

30 April 2018