SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs (Q42545602)

2 November 2017

SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs (English)

1 reference

2 November 2017

1 reference

Tanvir R Shaikh

1

1 reference

2 November 2017

Haixiao Gao

2

1 reference

2 November 2017

William T Baxter

3

1 reference

2 November 2017

Francisco J Asturias

4

1 reference

2 November 2017

Nicolas Boisset

5

1 reference

2 November 2017

Ardean Leith

6

1 reference

2 November 2017

Joachim Frank

7

1 reference

2 November 2017

1 January 2008

1 reference

2 November 2017

1 reference

2 November 2017

3

1 reference

2 November 2017

12

1 reference

2 November 2017

1941-1974

1 reference

Structures of modified eEF2 80S ribosome complexes reveal the role of GTP hydrolysis in translocation

2 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2737740

Structural characterization of the fission yeast U5.U2/U6 spliceosome complex

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2737740

Following the signal sequence from ribosomal tunnel exit to signal recognition particle

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2737740

SPIRE: the SPIDER reconstruction engine

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2737740

Fast automatic particle picking from cryo-electron micrographs using a locally normalized cross-correlation function: a case study

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2737740

Structure of yeast RNA polymerase II in solution: implications for enzyme regulation and interaction with promoter DNA.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2737740

Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2737740

Lumbricus terrestris hemoglobin--the architecture of linker chains and structural variation of the central toroid

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2737740

Solution structure of the E. coli 70S ribosome at 11.5 A resolution

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2737740

EMAN: semiautomated software for high-resolution single-particle reconstructions

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2737740

A common-lines based method for determining orientations for N > 3 particle projections simultaneously

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2737740

SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2737740

A new generation of the IMAGIC image processing system

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2737740

Three-dimensional reconstruction from a single-exposure, random conical tilt series applied to the 50S ribosomal subunit of Escherichia coli

28 May 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2737740

28 May 2018

https://api.crossref.org/works/10.1038%2FNPROT.2008.156

Three-dimensional reconstruction of single particles from random and nonrandom tilt series

31 March 2020

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2737740

Three-dimensional reconstruction of single particles embedded in ice

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2737740

Reconstruction of glutamine synthetase using computer averaging

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2737740

Disentangling conformational states of macromolecules in 3D-EM through likelihood optimization.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2737740

An archaeal peptidase assembles into two different quaternary structures: A tetrahedron and a giant octahedron.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2737740

The three-dimensional structure of complex I from Yarrowia lipolytica: a highly dynamic enzyme

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2737740

Particle finding in electron micrographs using a fast local correlation algorithm.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2737740

Angular reconstitution: a posteriori assignment of projection directions for 3D reconstruction.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2737740

Three-dimensional reconstruction with contrast transfer function correction from energy-filtered cryoelectron micrographs: procedure and application to the 70S Escherichia coli ribosome.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2737740

Use of multivariate statistics in analysing the images of biological macromolecules

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2737740

Xmipp: An Image Processing Package for Electron Microscopy

16 August 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2008.156

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2008.156

On the structural changes of native human alpha2-macroglobulin upon proteinase entrapment. Three-dimensional structure of the half-transformed molecule

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2008.156

Three-dimensional structure of the human TFIID-IIA-IIB complex

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2008.156

The Reconstruction of a Three-Dimensional Structure from Projections and its Application to Electron Microscopy

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2008.156

Dynamics of EF-G interaction with the ribosome explored by classification of a heterogeneous cryo-EM dataset

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2008.156

Three-dimensional Architecture of Human α2-Macroglobulin Transformed with Methylamine

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2008.156

31 March 2020

Identifiers

DOI

10.1038/NPROT.2008.156

1 reference

2 November 2017

1 reference

2 November 2017

PubMed publication ID

19180078

1 reference