Transcriptome and phenotypic responses of Vibrio cholerae to increased cyclic di-GMP level (Q41672623)

6 October 2017

Transcriptome and phenotypic responses of Vibrio cholerae to increased cyclic di-GMP level (English)

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6 October 2017

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Sinem Beyhan

1

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6 October 2017

Anna D Tischler

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2

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6 October 2017

Andrew Camilli

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3

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6 October 2017

Fitnat H Yildiz

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4

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6 October 2017

1 May 2006

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6 October 2017

14

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inferred from page(s)

published in

Journal of Bacteriology

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6 October 2017

188

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6 October 2017

10

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6 October 2017

3600-3613

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Regulation of cellulose synthesis in Acetobacter xylinum by cyclic diguanylic acid

6 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

A chemosensory system that regulates biofilm formation through modulation of cyclic diguanylate levels

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

Identification of novel stage-specific genetic requirements through whole genome transcription profiling of Vibrio cholerae biofilm development

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

The EAL domain protein VieA is a cyclic diguanylate phosphodiesterase

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

The ubiquitous protein domain EAL is a cyclic diguanylate-specific phosphodiesterase: enzymatically active and inactive EAL domains

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

Identification and characterization of a cyclic di-GMP-specific phosphodiesterase and its allosteric control by GTP.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

The phosphodiesterase activity of the HmsP EAL domain is required for negative regulation of biofilm formation in Yersinia pestis

6 June 2018

1 reference

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Characterization of the rdar morphotype, a multicellular behaviour in Enterobacteriaceae.

6 June 2018

1 reference

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c-di-GMP (3'-5'-cyclic diguanylic acid) inhibits Staphylococcus aureus cell-cell interactions and biofilm formation

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

Bioconductor: open software development for computational biology and bioinformatics

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

GGDEF and EAL domains inversely regulate cyclic di-GMP levels and transition from sessility to motility

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

Cyclic di-GMP as a bacterial second messenger.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

The sodium-driven flagellar motor controls exopolysaccharide expression in Vibrio cholerae

6 June 2018

1 reference

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Molecular analysis of rugosity in a Vibrio cholerae O1 El Tor phase variant

6 June 2018

1 reference

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Bacterial signal transduction network in a genomic perspective

6 June 2018

1 reference

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Genetic evidence that the Vibrio cholerae monolayer is a distinct stage in biofilm development

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

Cyclic di-guanosine-monophosphate comes of age: a novel secondary messenger involved in modulating cell surface structures in bacteria?

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

The Vibrio cholerae chitin utilization program

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

VpsT is a transcriptional regulator required for expression of vps biosynthesis genes and the development of rugose colonial morphology in Vibrio cholerae O1 El Tor.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

The application of biofilm science to the study and control of chronic bacterial infections

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

Quorum Sensing-Dependent Biofilms Enhance Colonization in Vibrio cholerae

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

Environmental determinants of Vibrio cholerae biofilm development

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

Biofilm formation by Pseudomonas aeruginosa wild type, flagella and type IV pili mutants

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

Identification and characterization of a Vibrio cholerae gene, mbaA, involved in maintenance of biofilm architecture

6 June 2018

1 reference

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Vibrio cholerae CytR is a repressor of biofilm development

6 June 2018

1 reference

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Vibrio cholerae and cholera: out of the water and into the host

6 June 2018

1 reference

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Novel domains of the prokaryotic two-component signal transduction systems

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

The mannose-sensitive hemagglutinin of Vibrio cholerae promotes adherence to zooplankton

6 June 2018

1 reference

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Type II secretion and pathogenesis

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

Significance analysis of microarrays applied to the ionizing radiation response

6 June 2018

1 reference

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The novel sigma54- and sigma28-dependent flagellar gene transcription hierarchy of Vibrio cholerae

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

VpsR, a Member of the Response Regulators of the Two-Component Regulatory Systems, Is Required for Expression of vps Biosynthesis Genes and EPS(ETr)-Associated Phenotypes in Vibrio cholerae O1 El Tor

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

The absence of a flagellum leads to altered colony morphology, biofilm development and virulence in Vibrio cholerae O139.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

GGDEF domain is homologous to adenylyl cyclase

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

Quantification of biofilm structures by the novel computer program comstat

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

Mutations in the extracellular protein secretion pathway genes (eps) interfere with rugose polysaccharide production in and motility of Vibrio cholerae

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

Steps in the development of a Vibrio cholerae El Tor biofilm

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

A role for the mannose-sensitive hemagglutinin in biofilm formation by Vibrio cholerae El Tor.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

Vibrio cholerae O1 El Tor: identification of a gene cluster required for the rugose colony type, exopolysaccharide production, chlorine resistance, and biofilm formation

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

Genetic characterization of a new type IV-A pilus gene cluster found in both classical and El Tor biotypes of Vibrio cholerae

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

Epidemiology, genetics, and ecology of toxigenic Vibrio cholerae

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

Flagellar and twitching motility are necessary for Pseudomonas aeruginosa biofilm development

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

Three cdg operons control cellular turnover of cyclic di-GMP in Acetobacter xylinum: genetic organization and occurrence of conserved domains in isoenzymes.

6 June 2018

1 reference

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Role of rpoS in stress survival and virulence of Vibrio cholerae

6 June 2018

1 reference

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Use of recombinase gene fusions to identify Vibrio cholerae genes induced during infection

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

Differential expression of the ToxR regulon in classical and E1 Tor biotypes of Vibrio cholerae is due to biotype-specific control over toxT expression

6 June 2018

1 reference

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Analysis and construction of stable phenotypes in gram-negative bacteria with Tn5- and Tn10-derived minitransposons

6 June 2018

1 reference

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Environmental reservoir of Vibrio cholerae. The causative agent of cholera

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter

6 June 2018

1 reference

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A novel suicide vector and its use in construction of insertion mutations: osmoregulation of outer membrane proteins and virulence determinants in Vibrio cholerae requires toxR

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

Cyclic diguanylate regulates Vibrio cholerae virulence gene expression

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

Cyclic diguanylate (c-di-GMP) regulates Vibrio cholerae biofilm formation.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1482859

An improved Tn7-based system for the single-copy insertion of cloned genes into chromosomes of gram-negative bacteria

18 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16672614

12 December 2020

inferred from PubMed ID database lookup

Gene splicing by overlap extension

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16672614

12 December 2020

inferred from PubMed ID database lookup

Improvement of the gene splicing overlap (SOE) method

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16672614

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1128/JB.188.10.3600-3613.2006

1 reference

6 October 2017

1 reference

6 October 2017

PubMed publication ID

16672614

1 reference