Modulation of Folding Internal Friction by Local and Global Barrier Heights (Q41576344)

4 October 2017

Modulation of Folding Internal Friction by Local and Global Barrier Heights (English)

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4 October 2017

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4 October 2017

3

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4 October 2017

Wenwei Zheng

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PMC publication ID

5578457

4 October 2017

language of work or name

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7 March 2016

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Journal of Physical Chemistry Letters

4 October 2017

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4 October 2017

7

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4 October 2017

6

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4 October 2017

1028-1034

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Dependence of internal friction on folding mechanism

4 October 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5578457

Markov state models provide insights into dynamic modulation of protein function

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5578457

Molecular origins of internal friction effects on protein-folding rates

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5578457

Single-molecule fluorescence probes dynamics of barrier crossing

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5578457

Native contacts determine protein folding mechanisms in atomistic simulations

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5578457

Exploring the role of internal friction in the dynamics of unfolded proteins using simple polymer models

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5578457

Separating the effects of internal friction and transition state energy to explain the slow, frustrated folding of spectrin domains

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5578457

Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5578457

Different members of a simple three-helix bundle protein family have very different folding rate constants and fold by different mechanisms

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5578457

Measuring internal friction of an ultrafast-folding protein

6 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5578457

Solvent viscosity dependence of the folding rate of a small protein: distributed computing study

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5578457

Polyproline II structure in a sequence of seven alanine residues.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5578457

Limited internal friction in the rate-limiting step of a two-state protein folding reaction

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5578457

From Levinthal to pathways to funnels

6 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5578457

Navigating the folding routes

6 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5578457

The role of solvent viscosity in the dynamics of protein conformational changes

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5578457

Protein folding funnels: a kinetic approach to the sequence-structure relationship

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5578457

Transmission Coefficients, Committors, and Solvent Coordinates in Ion-Pair Dissociation

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5578457

Peptide chain dynamics in light and heavy water: zooming in on internal friction

19 August 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5578457

Markov models of molecular kinetics: generation and validation

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5578457

Coarse master equations for peptide folding dynamics.

19 August 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5578457

From transition paths to transition states and rate coefficients

19 August 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5578457

A limiting speed for protein folding at low solvent viscosity

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5578457

Structure and Dynamics of the Homologous Series of Alanine Peptides: A Joint Molecular Dynamics/NMR Study

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5578457

The transition state transit time of WW domain folding is controlled by energy landscape roughness

2 December 2018

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https://pubmed.ncbi.nlm.nih.gov/26947615

12 December 2020

Structural origin of slow diffusion in protein folding

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https://pubmed.ncbi.nlm.nih.gov/26947615

12 December 2020

Concerted dihedral rotations give rise to internal friction in unfolded proteins

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https://pubmed.ncbi.nlm.nih.gov/26947615

12 December 2020

Unfolding and folding internal friction of β-hairpins is smaller than that of α-helices

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https://pubmed.ncbi.nlm.nih.gov/26947615

12 December 2020

Diffusional barrier crossing in a two-state protein folding reaction

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https://pubmed.ncbi.nlm.nih.gov/26947615

12 December 2020

Reduction of All-Atom Protein Folding Dynamics to One-Dimensional Diffusion

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https://pubmed.ncbi.nlm.nih.gov/26947615

12 December 2020

Protein folding bottlenecks: A lattice Monte Carlo simulation

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https://pubmed.ncbi.nlm.nih.gov/26947615

12 December 2020

Internal friction controls the speed of protein folding from a compact configuration

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https://pubmed.ncbi.nlm.nih.gov/26947615

12 December 2020

10.1021/ACS.JPCLETT.6B00329

Identifiers

DOI

1 reference

4 October 2017

1 reference

PMC publication ID

5578457

4 October 2017

PubMed publication ID

26947615

1 reference

PMC publication ID

5578457