Modeling Structural Flexibility of Proteins with Go-Models (Q37167035)

18 August 2017

Modeling Structural Flexibility of Proteins with Go-Models (English)

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18 August 2017

2

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3 June 2020

author name string

Ping Jiang

series ordinal

1

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3 June 2020

publication date

1 June 2012

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Journal of Chemical Theory and Computation

18 August 2017

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3 June 2020

volume

8

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3 June 2020

issue

6

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3 June 2020

page(s)

2127-2133

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GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

3 June 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771579

Challenges in protein folding simulations: Timescale, representation, and analysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771579

SMOG@ctbp: simplified deployment of structure-based models in GROMACS

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771579

Protein folding roller coaster, one molecule at a time

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771579

An all-atom structure-based potential for proteins: bridging minimal models with all-atom empirical forcefields

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771579

Binding-induced folding of a natively unstructured transcription factor.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771579

Understanding protein folding: small proteins in silico

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771579

Folding of proteins with diverse folds

6 September 2017

1 reference

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Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: Structure-based molecular dynamics simulations

6 September 2017

1 reference

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Coarse-grained models for proteins

6 September 2017

1 reference

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Folding proteins in fatal ways

6 September 2017

1 reference

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Exploring the origins of topological frustration: design of a minimally frustrated model of fragment B of protein A.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771579

Isolation of a candidate gene for Menkes disease and evidence that it encodes a copper-transporting ATPase

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771579

Cooperativity in protein-folding kinetics

6 September 2017

1 reference

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Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771579

Robustness and generalization of structure-based models for protein folding and function.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771579

Generalized ensemble and tempering simulations: a unified view.

3 September 2018

1 reference

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Folding with downhill behavior and low cooperativity of proteins

3 September 2018

1 reference

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Slow Protein Conformational Dynamics from Multiple Experimental Structures: The Helix/Sheet Transition of Arc Repressor

3 September 2018

1 reference

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A numerical investigation into possible mechanisms by that the A629P mutant of ATP7A causes Menkes Disease

4 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24039551

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/CT3000469

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24039551%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

1 reference

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3 June 2020

PubMed publication ID

24039551

1 reference