Potential pitfalls in microRNA profiling (Q36683715)

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31 January 2020

title

Potential pitfalls in microRNA profiling (English)

1 reference

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31 January 2020

1 reference

1 reference

2

1 reference

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31 January 2020

author name string

Pauline Chugh

series ordinal

1

1 reference

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publication date

7 May 2012

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Wiley interdisciplinary reviews. RNA

31 January 2020

published in

1 reference

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31 January 2020

volume

3

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issue

5

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31 January 2020

page(s)

601-616

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Label-free high-throughput microRNA expression profiling from total RNA.

31 January 2020

cites work

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Complexity of the microRNA repertoire revealed by next-generation sequencing

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Kaposi sarcoma (KS)-associated herpesvirus microRNA sequence analysis and KS risk in a European AIDS-KS case control study.

30 September 2017

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30 September 2017

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30 September 2017

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30 September 2017

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30 September 2017

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30 September 2017

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In-depth analysis of Kaposi's sarcoma-associated herpesvirus microRNA expression provides insights into the mammalian microRNA-processing machinery

30 September 2017

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30 September 2017

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Gene alteration and precursor and mature microRNA transcription changes contribute to the miRNA signature of primary effusion lymphoma.

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Locked nucleic acid: high-affinity targeting of complementary RNA for RNomics.

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Modulation of microRNA processing and expression through RNA editing by ADAR deaminases

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A human, ATP-independent, RISC assembly machine fueled by pre-miRNA

30 September 2017

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Real-time quantification of microRNAs by stem-loop RT-PCR

30 September 2017

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TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing

30 September 2017

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Identification of microRNAs of the herpesvirus family

30 September 2017

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Microarray-based, high-throughput gene expression profiling of microRNAs

30 September 2017

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Principles of microRNA-target recognition

30 September 2017

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A protein sensor for siRNA asymmetry

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30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

An oligonucleotide microchip for genome-wide microRNA profiling in human and mouse tissues

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

Kinetic analysis of the RNAi enzyme complex

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

30 September 2017

The microRNA Registry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

Functional siRNAs and miRNAs Exhibit Strand Bias

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

Asymmetry in the assembly of the RNAi enzyme complex

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

Standardized determination of real-time PCR efficiency from a single reaction set-up

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

A microRNA in a multiple-turnover RNAi enzyme complex

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

Identification of tissue-specific microRNAs from mouse

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

Relative expression software tool (REST©) for group-wise comparison and statistical analysis of relative expression results in real-time PCR

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

An RNA-directed nuclease mediates post-transcriptional gene silencing in Drosophila cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

Plasma microRNA panel to diagnose hepatitis B virus-related hepatocellular carcinoma

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

Small RNA profiling reveals antisense transcription throughout the KSHV genome and novel small RNAs

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

Naturally occurring variations in sequence length creates microRNA isoforms that differ in argonaute effector complex specificity.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

Quantitative miRNA expression analysis: comparing microarrays with next-generation sequencing.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

Intra-platform repeatability and inter-platform comparability of microRNA microarray technology

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

MicroRNA profiling using µParaflo microfluidic array technology.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

Serum microRNA-29a is a promising novel marker for early detection of colorectal liver metastasis.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

Profiling of Epstein-Barr virus-encoded microRNAs in nasopharyngeal carcinoma reveals potential biomarkers and oncomirs.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

Identification of virus encoding microRNAs using 454 FLX sequencing platform

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

Rapid electronic detection of probe-specific microRNAs using thin nanopore sensors

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

Analysis of circulating microRNA biomarkers in plasma and serum using quantitative reverse transcription-PCR (qRT-PCR).

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

Statistical aspects of quantitative real-time PCR experiment design.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

Analysis of the expression profiles of Marek's disease virus-encoded microRNAs by real-time quantitative PCR.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

Endogenous microRNA can be broadly exploited to regulate transgene expression according to tissue, lineage and differentiation state

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

Comparison of reverse transcriptases in gene expression analysis.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

A statistical method for flagging weak spots improves normalization and ratio estimates in microarrays.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3597218

MicroRNA identification in plasma and serum: a new tool to diagnose and monitor diseases

5 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22566380

12 December 2020

inferred from PubMed ID database lookup

Perfect seed pairing is not a generally reliable predictor for miRNA-target interactions

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22566380

12 December 2020

inferred from PubMed ID database lookup

Sequence variation of MicroRNAs and their binding sites in Arabidopsis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22566380

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1002/WRNA.1120

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22566380%20AND%20SRC:MED&resulttype=core&format=json

release_5e5tvhbk4refdiwfbgi465ut6e

31 January 2020

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/5e5tvhbk4refdiwfbgi465ut6e

24 November 2022

mapped directly with Wikidata item

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22566380%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

PubMed publication ID

22566380

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22566380%20AND%20SRC:MED&resulttype=core&format=json