P-TEFb regulation of transcription termination factor Xrn2 revealed by a chemical genetic screen for Cdk9 substrates. (Q36432038)

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3 March 2020

title

P-TEFb regulation of transcription termination factor Xrn2 revealed by a chemical genetic screen for Cdk9 substrates (English)

1 reference

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3 March 2020

1

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3 March 2020

Matthias Geyer

11

1 reference

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3 March 2020

Liang Tong

12

1 reference

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3 March 2020

author name string

Rebecca S Levin

2

1 reference

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3 March 2020

Jesse J Lipp

3

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3 March 2020

Vivien Ya-Fan Wang

4

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3 March 2020

Ann Katrin Greifenberg

5

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3 March 2020

Elizabeth M Quezada

6

1 reference

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3 March 2020

Akbar Ali

7

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3 March 2020

Animesh Ghosh

8

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3 March 2020

Stéphane Larochelle

9

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3 March 2020

Tariq M Rana

10

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3 March 2020

Kevan M Shokat

13

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3 March 2020

Robert P Fisher

14

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3 March 2020

publication date

1 January 2016

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3 March 2020

1 reference

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3 March 2020

volume

30

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3 March 2020

issue

1

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3 March 2020

page(s)

117-131

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describes a project that uses

3 March 2020

ImageQuant

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11 June 2022

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based on heuristic

inferred from PubMed Central ID database lookup

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Effects of Transcription Elongation Rate and Xrn2 Exonuclease Activity on RNA Polymerase II Termination Suggest Widespread Kinetic Competition.

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YAP Drives Growth by Controlling Transcriptional Pause Release from Dynamic Enhancers

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Compensatory induction of MYC expression by sustained CDK9 inhibition via a BRD4-dependent mechanism

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CDK9 inhibitors define elongation checkpoints at both ends of RNA polymerase II-transcribed genes.

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TRIM28 regulates RNA polymerase II promoter-proximal pausing and pause release

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CPF-associated phosphatase activity opposes condensin-mediated chromosome condensation

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The structure and substrate specificity of human Cdk12/Cyclin K

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Modelling the CDK-dependent transcription cycle in fission yeast

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Heterogeneous nuclear ribonucleoprotein (HnRNP) K genome-wide binding survey reveals its role in regulating 3'-end RNA processing and transcription termination at the early growth response 1 (EGR1) gene through XRN2 exonuclease

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Cyclin-dependent kinase control of the initiation-to-elongation switch of RNA polymerase II

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The RNA polymerase II CTD coordinates transcription and RNA processing.

30 September 2017

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Phosphorylation by cyclin-dependent kinase-9 controls ubiquitin-conjugating enzyme-2A function

30 September 2017

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BRD4 is an atypical kinase that phosphorylates serine2 of the RNA polymerase II carboxy-terminal domain

30 September 2017

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Glucocorticoid-dependent phosphorylation of the transcriptional coregulator GRIP1.

30 September 2017

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RNAP II CTD phosphorylated on threonine-4 is required for histone mRNA 3' end processing

30 September 2017

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Coupled 5′ Nucleotide Recognition and Processivity in Xrn1-Mediated mRNA Decay

30 September 2017

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Structural and biochemical studies of the 5′→3′ exoribonuclease Xrn1

30 September 2017

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Pol II waiting in the starting gates: Regulating the transition from transcription initiation into productive elongation.

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CDK12 is a transcription elongation-associated CTD kinase, the metazoan ortholog of yeast Ctk1

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AFF4, a component of the ELL/P-TEFb elongation complex and a shared subunit of MLL chimeras, can link transcription elongation to leukemia

30 September 2017

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Nuclear CDKs drive Smad transcriptional activation and turnover in BMP and TGF-beta pathways

30 September 2017

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Real-time fluorescence detection of exoribonucleases

30 September 2017

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TFIIH-associated Cdk7 kinase functions in phosphorylation of C-terminal domain Ser7 residues, promoter-proximal pausing, and termination by RNA polymerase II

30 September 2017

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Identification of flavopiridol analogues that selectively inhibit positive transcription elongation factor (P-TEFb) and block HIV-1 replication

30 September 2017

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Torpedo Nuclease Rat1 Is Insufficient to Terminate RNA Polymerase II in Vitro

30 September 2017

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Cell cycle, CDKs and cancer: a changing paradigm

30 September 2017

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Structure and function of the 5′→3′ exoribonuclease Rat1 and its activating partner Rai1

30 September 2017

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Identification of CDK2 substrates in human cell lysates

30 September 2017

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A quantitative atlas of mitotic phosphorylation

30 September 2017

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The structure of P-TEFb (CDK9/cyclin T1), its complex with flavopiridol and regulation by phosphorylation

30 September 2017

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Covalent capture of kinase-specific phosphopeptides reveals Cdk1-cyclin B substrates.

30 September 2017

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Systematic analysis of the protein interaction network for the human transcription machinery reveals the identity of the 7SK capping enzyme

30 September 2017

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A semisynthetic epitope for kinase substrates.

30 September 2017

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Requirements for Cdk7 in the assembly of Cdk1/cyclin B and activation of Cdk2 revealed by chemical genetics in human cells.

30 September 2017

1 reference

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The mixed-lineage leukemia fusion partner AF4 stimulates RNA polymerase II transcriptional elongation and mediates coordinated chromatin remodeling

30 September 2017

1 reference

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The role of Rat1 in coupling mRNA 3'-end processing to transcription termination: implications for a unified allosteric-torpedo model

30 September 2017

1 reference

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Gene-specific requirement for P-TEFb activity and RNA polymerase II phosphorylation within the p53 transcriptional program

30 September 2017

1 reference

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Multiple processing body factors and the ARE binding protein TTP activate mRNA decapping

30 September 2017

1 reference

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Recruitment of P-TEFb for stimulation of transcriptional elongation by the bromodomain protein Brd4

30 September 2017

1 reference

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The bromodomain protein Brd4 is a positive regulatory component of P-TEFb and stimulates RNA polymerase II-dependent transcription

30 September 2017

1 reference

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Analysis of the large inactive P-TEFb complex indicates that it contains one 7SK molecule, a dimer of HEXIM1 or HEXIM2, and two P-TEFb molecules containing Cdk9 phosphorylated at threonine 186

30 September 2017

1 reference

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Human 5' --> 3' exonuclease Xrn2 promotes transcription termination at co-transcriptional cleavage sites

30 September 2017

1 reference

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The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II.

30 September 2017

1 reference

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Transitions in RNA polymerase II elongation complexes at the 3' ends of genes

30 September 2017

1 reference

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Dynamics of human immunodeficiency virus transcription: P-TEFb phosphorylates RD and dissociates negative effectors from the transactivation response element

30 September 2017

1 reference

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Human Dcp2: a catalytically active mRNA decapping enzyme located in specific cytoplasmic structures

30 September 2017

1 reference

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Chemical genetic approaches for the elucidation of signaling pathways

30 September 2017

1 reference

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T-loop phosphorylation stabilizes the CDK7-cyclin H-MAT1 complex in vivo and regulates its CTD kinase activity

30 September 2017

1 reference

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Flavopiridol inactivates P-TEFb and blocks most RNA polymerase II transcription in vivo

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4701974

Three RNA polymerase II carboxyl-terminal domain kinases display distinct substrate preferences

30 September 2017

1 reference

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Positive transcription elongation factor B phosphorylates hSPT5 and RNA polymerase II carboxyl-terminal domain independently of cyclin-dependent kinase-activating kinase.

30 September 2017

1 reference

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Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry

30 September 2017

1 reference

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Structural modifications of RNA influence the 5' exoribonucleolytic hydrolysis by XRN1 and HKE1 of Saccharomyces cerevisiae

30 September 2017

1 reference

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Control of RNA polymerase II elongation potential by a novel carboxyl-terminal domain kinase

30 September 2017

1 reference

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The structure and function of proteins involved in mammalian pre-mRNA splicing

30 September 2017

1 reference

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Use of an oriented peptide library to determine the optimal substrates of protein kinases

30 September 2017

1 reference

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SMADs and YAP compete to control elongation of β-catenin:LEF-1-recruited RNAPII during hESC differentiation.

30 September 2017

1 reference

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3' end formation of pre-mRNA and phosphorylation of Ser2 on the RNA polymerase II CTD are reciprocally coupled in human cells

28 June 2018

1 reference

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mRNA decapping factors and the exonuclease Xrn2 function in widespread premature termination of RNA polymerase II transcription

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4701974

PAXT-1 promotes XRN2 activity by stabilizing it through a conserved domain

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4701974

Co-transcriptional degradation of aberrant pre-mRNA by Xrn2.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4701974

P-TEFb-mediated phosphorylation of hSpt5 C-terminal repeats is critical for processive transcription elongation

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4701974

DNA replication-dependent nuclear dynamics of the Mre11 complex.

21 September 2018

1 reference

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21 September 2018

Identifiers

DOI

10.1101/GAD.269589.115

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26728557%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26728557%20AND%20SRC:MED&resulttype=core&format=json

3 March 2020

PubMed publication ID

26728557

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26728557%20AND%20SRC:MED&resulttype=core&format=json