Role for RNA:DNA hybrids in origin-independent replication priming in a eukaryotic system. (Q35590194)

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6 March 2020

title

Role for RNA:DNA hybrids in origin-independent replication priming in a eukaryotic system (English)

1 reference

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6 March 2020

1

1 reference

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6 March 2020

Néstor García-Rodríguez

2

1 reference

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6 March 2020

Andrés Aguilera

3

1 reference

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6 March 2020

Ralf E. Wellinger

4

1 reference

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6 March 2020

author name string

Ruth Stuckey

1

1 reference

PubMed publication ID

25902524

9 August 2017

Néstor García-Rodríguez

2

1 reference

PubMed publication ID

25902524

9 August 2017

language of work or name

English

0 references

publication date

20 April 2015

1 reference

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Proceedings of the National Academy of Sciences of the United States of America

6 March 2020

published in

1 reference

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6 March 2020

volume

112

1 reference

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6 March 2020

issue

18

1 reference

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6 March 2020

page(s)

5779-5784

1 reference

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End of the beginning: elongation and termination features of alternative modes of chromosomal replication initiation in bacteria

6 March 2020

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Genome-wide distribution of RNA-DNA hybrids identifies RNase H targets in tRNA genes, retrotransposons and mitochondria

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Roles for Pbp1 and caloric restriction in genome and lifespan maintenance via suppression of RNA-DNA hybrids

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Molecular Basis for Coordinating Transcription Termination with Noncoding RNA Degradation

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A double-edged sword: R loops as threats to genome integrity and powerful regulators of gene expression

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Reversible Top1 cleavage complexes are stabilized strand-specifically at the ribosomal replication fork barrier and contribute to ribosomal DNA stability

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27 July 2018

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Migrating bubble during break-induced replication drives conservative DNA synthesis

27 July 2018

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An expanded tool kit for the auxin-inducible degron system in budding yeast

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Pif1 family helicases suppress genome instability at G-quadruplex motifs

27 July 2018

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RNase H2 roles in genome integrity revealed by unlinking its activities

27 July 2018

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R-loops cause replication impairment and genome instability during meiosis

27 July 2018

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R loops: from transcription byproducts to threats to genome stability

27 July 2018

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RNase H and postreplication repair protect cells from ribonucleotides incorporated in DNA

27 July 2018

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R-loop-mediated genomic instability is caused by impairment of replication fork progression

27 July 2018

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Mutagenic processing of ribonucleotides in DNA by yeast topoisomerase I

27 July 2018

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Human senataxin resolves RNA/DNA hybrids formed at transcriptional pause sites to promote Xrn2-dependent termination

27 July 2018

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Yeast Sen1 helicase protects the genome from transcription-associated instability.

27 July 2018

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Distinguishing the roles of Topoisomerases I and II in relief of transcription-induced torsional stress in yeast rRNA genes

27 July 2018

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RNA-dependent control of gene amplification

27 July 2018

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Topoisomerase I suppresses genomic instability by preventing interference between replication and transcription

27 July 2018

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DNA Topoisomerase I Inhibitors: Chemistry, Biology, and Interfacial Inhibition

27 July 2018

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Ribonuclease H: the enzymes in eukaryotes

27 July 2018

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Senataxin, the yeast Sen1p orthologue: characterization of a unique protein in which recessive mutations cause ataxia and dominant mutations cause motor neuron disease

27 July 2018

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Growth inhibition mediated by excess negative supercoiling: the interplay between transcription elongation, R-loop formation and DNA topology

27 July 2018

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Human DNA topoisomerase I: relaxation, roles, and damage control

27 July 2018

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Intracellular transcription of G-rich DNAs induces formation of G-loops, novel structures containing G4 DNA

27 July 2018

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Senataxin, the ortholog of a yeast RNA helicase, is mutant in ataxia-ocular apraxia 2.

27 July 2018

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Cotranscriptionally Formed DNA:RNA Hybrids Mediate Transcription Elongation Impairment and Transcription-Associated Recombination

27 July 2018

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Rad52-independent accumulation of joint circular minichromosomes during S phase in Saccharomyces cerevisiae

27 July 2018

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Fork reversal and ssDNA accumulation at stalled replication forks owing to checkpoint defects

27 July 2018

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The origin of replication, oriC, and the dnaA protein are dispensable in stable DNA replication (sdrA) mutants of Escherichia coli K-12.

27 July 2018

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Break-induced replication: a review and an example in budding yeast

27 July 2018

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Coupled leading- and lagging-strand synthesis of mammalian mitochondrial DNA.

27 July 2018

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Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae

27 July 2018

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Amplification of oncogenes in human cancer cells

27 July 2018

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Extrachromosomal rDNA circles--a cause of aging in yeast

27 July 2018

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DNA polymerase I in constitutive stable DNA replication in Escherichia coli

27 July 2018

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RNA-DNA hybrid formation at the human mitochondrial heavy-strand origin ceases at replication start sites: an implication for RNA-DNA hybrids serving as primers

27 July 2018

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The role of the 70 kDa subunit of human DNA polymerase alpha in DNA replication

27 July 2018

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Replication factor A is required in vivo for DNA replication, repair, and recombination

27 July 2018

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Cell cycle-dependent phosphorylation and dephosphorylation of the yeast DNA polymerase alpha-primase B subunit

27 July 2018

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Overexpression of RNase H partially complements the growth defect of an Escherichia coli delta topA mutant: R-loop formation is a major problem in the absence of DNA topoisomerase I

27 July 2018

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Absence of RNase H allows replication of pBR322 in Escherichia coli mutants lacking DNA polymerase I

27 July 2018

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Interaction between DNA and an Escherichia coli protein omega

27 July 2018

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The amplification of ribosomal RNA genes involves a rolling circle intermediate

27 July 2018

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Isolation and characterization of temperature-sensitive mutations in RPA190, the gene encoding the largest subunit of RNA polymerase I from Saccharomyces cerevisiae

27 July 2018

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Supercoiling of the DNA template during transcription

27 July 2018

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The localization of replication origins on ARS plasmids in S. cerevisiae

27 July 2018

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Early dihydrofolate reductase gene amplification events in CHO cells usually occur on the same chromosome arm as the original locus

27 July 2018

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Multiple replication origins are used during Drosophila chorion gene amplification

27 July 2018

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Prokaryotic DNA replication

27 July 2018

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Hybridization of RNA to double-stranded DNA: formation of R-loops

27 July 2018

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A novel Escherichia coli mutant capable of DNA replication in the absence of protein synthesis

27 July 2018

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R-loops and nicks initiate DNA breakage and genome instability in non-growing Escherichia coli

27 July 2018

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Collisions between replication and transcription complexes cause common fragile site instability at the longest human genes

26 September 2018

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Loss of Topoisomerase I leads to R-loop-mediated transcriptional blocks during ribosomal RNA synthesis

26 September 2018

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Competition between the RNA transcript and the nontemplate DNA strand during R-loop formation in vitro: a nick can serve as a strong R-loop initiation site

26 September 2018

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Mechanochemical removal of ribosome biogenesis factors from nascent 60S ribosomal subunits

26 September 2018

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Palindromic gene amplification--an evolutionarily conserved role for DNA inverted repeats in the genome

26 September 2018

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The replisome uses mRNA as a primer after colliding with RNA polymerase

26 September 2018

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Hypernegative supercoiling inhibits growth by causing RNA degradation

26 September 2018

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Replication fork progression is impaired by transcription in hyperrecombinant yeast cells lacking a functional THO complex

26 September 2018

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Transcription-dependent recombination and the role of fork collision in yeast rDNA.

26 September 2018

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ATR homolog Mec1 promotes fork progression, thus averting breaks in replication slow zones.

26 September 2018

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Cellular roles of dna topoisomerases: a molecular perspective

26 September 2018

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Replication dynamics of the yeast genome.

26 September 2018

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The Saccharomyces Pif1p DNA helicase and the highly related Rrm3p have opposite effects on replication fork progression in ribosomal DNA.

26 September 2018

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The B subunit of the DNA polymerase alpha-primase complex in Saccharomyces cerevisiae executes an essential function at the initial stage of DNA replication

26 September 2018

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Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae

26 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1501769112

Multiple origin usage for DNA replication in sdrA(rnh) mutants of Escherichia coli K-12. Initiation in the absence of oriC

21 January 2018

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12 December 2020

RNase H-defective mutants of Escherichia coli: a possible discriminatory role of RNase H in initiation of DNA replication

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12 December 2020

RNase H overproduction corrects a defect at the level of transcription elongation during rRNA synthesis in the absence of DNA topoisomerase I in Escherichia coli

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12 December 2020

The Mre11 complex is required for repair of hairpin-capped double-strand breaks and prevention of chromosome rearrangements

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12 December 2020

Direct restart of a replication fork stalled by a head-on RNA polymerase

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12 December 2020

Strand invasion structures in the inverted repeat of Candida albicans mitochondrial DNA reveal a role for homologous recombination in replication

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12 December 2020

Identifiers

DOI

10.1073/PNAS.1501769112

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25902524%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25902524%20AND%20SRC:MED&resulttype=core&format=json

6 March 2020

PubMed publication ID

25902524

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25902524%20AND%20SRC:MED&resulttype=core&format=json