RNA-mediated silencing in Algae: biological roles and tools for analysis of gene function (Q35271354)

7 August 2017

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title

RNA-mediated silencing in Algae: biological roles and tools for analysis of gene function (English)

1 reference

7 August 2017

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1 reference

Heriberto Cerutti

1

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7 August 2017

Xinrong Ma

series ordinal

2

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7 August 2017

Joseph Msanne

series ordinal

3

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7 August 2017

Timothy Repas

series ordinal

4

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7 August 2017

publication date

29 July 2011

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7 August 2017

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7 August 2017

volume

10

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7 August 2017

issue

9

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7 August 2017

page(s)

1164-1172

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Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics

7 August 2017

cites work

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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MicroRNAs and gene regulatory networks: managing the impact of noise in biological systems

12 July 2018

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MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data

12 July 2018

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RNA-seq analysis of sulfur-deprived Chlamydomonas cells reveals aspects of acclimation critical for cell survival

12 July 2018

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Regulation of mRNA translation and stability by microRNAs

12 July 2018

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The Ectocarpus genome and the independent evolution of multicellularity in brown algae

12 July 2018

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Identification of miRNA from Porphyra yezoensis by high-throughput sequencing and bioinformatics analysis

12 July 2018

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The role of small non-coding RNAs in genome stability and chromatin organization

12 July 2018

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Origin of the polycomb repressive complex 2 and gene silencing by an E(z) homolog in the unicellular alga Chlamydomonas.

12 July 2018

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Biochemical principles of small RNA pathways

12 July 2018

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Uridylation of mature miRNAs and siRNAs by the MUT68 nucleotidyltransferase promotes their degradation in Chlamydomonas.

12 July 2018

1 reference

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Genetic engineering of algae for enhanced biofuel production

12 July 2018

1 reference

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Potential impact of stress activated retrotransposons on genome evolution in a marine diatom

12 July 2018

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Distinct and overlapping roles for two Dicer-like proteins in the RNA interference pathways of the ancient eukaryote Trypanosoma brucei

12 July 2018

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miRNPs: versatile regulators of gene expression in vertebrate cells

12 July 2018

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12 July 2018

RNAi in budding yeast

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Gene silencing in the marine diatom Phaeodactylum tricornutum

12 July 2018

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MicroRNAs and metazoan macroevolution: insights into canalization, complexity, and the Cambrian explosion

12 July 2018

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Small silencing RNAs: state-of-the-art

12 July 2018

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Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas

12 July 2018

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Origin, biogenesis, and activity of plant microRNAs

12 July 2018

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Small RNAs as guardians of the genome

12 July 2018

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Origins and Mechanisms of miRNAs and siRNAs

12 July 2018

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MicroRNAs: target recognition and regulatory functions

12 July 2018

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Small silencing RNAs: an expanding universe

12 July 2018

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Characterization of the glyceraldehyde-3-phosphate dehydrogenase (GAPDH) gene from the halotolerant alga Dunaliella salina and inhibition of its expression by RNAi

12 July 2018

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A stepwise pathway for biogenesis of 24-nt secondary siRNAs and spreading of DNA methylation

12 July 2018

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Genomic insights into marine microalgae

12 July 2018

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The evolution of RNAi as a defence against viruses and transposable elements

12 July 2018

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The Phaeodactylum genome reveals the evolutionary history of diatom genomes

12 July 2018

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The pathway via D-galacturonate/L-galactonate is significant for ascorbate biosynthesis in Euglena gracilis: identification and functional characterization of aldonolactonase

12 July 2018

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Importance of translation and nonnucleolytic ago proteins for on-target RNA interference

12 July 2018

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Beyond silencing--engineering applications of RNA interference and antisense technology for altering cellular phenotype

12 July 2018

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Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes

12 July 2018

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Diversification of the core RNA interference machinery in Chlamydomonas reinhardtii and the role of DCL1 in transposon silencing

12 July 2018

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Microalgal triacylglycerols as feedstocks for biofuel production: perspectives and advances

12 July 2018

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The MUT9p kinase phosphorylates histone H3 threonine 3 and is necessary for heritable epigenetic silencing in Chlamydomonas

12 July 2018

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The Argonaute protein family

12 July 2018

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Insertional mutagenesis as a tool to study genes/functions in Chlamydomonas.

12 July 2018

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AUREOCHROME, a photoreceptor required for photomorphogenesis in stramenopiles

12 July 2018

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Specialization and evolution of endogenous small RNA pathways

12 July 2018

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The Chlamydomonas genome reveals the evolution of key animal and plant functions

12 July 2018

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miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii

12 July 2018

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A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii

12 July 2018

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The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation

12 July 2018

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Novel metabolism in Chlamydomonas through the lens of genomics

12 July 2018

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Evaluating support for the current classification of eukaryotic diversity

12 July 2018

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Distinct populations of primary and secondary effectors during RNAi in C. elegans

12 July 2018

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Small dsRNAs induce transcriptional activation in human cells

12 July 2018

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Evidence of off-target effects associated with long dsRNAs in Drosophila melanogaster cell-based assays

12 July 2018

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Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features

12 July 2018

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Evolution and diversification of RNA silencing proteins in fungi

12 July 2018

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On the origin and functions of RNA-mediated silencing: from protists to man

12 July 2018

1 reference

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RNA silencing in Chlamydomonas: mechanisms and tools

12 July 2018

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The NIT1 promoter allows inducible and reversible silencing of centrin in Chlamydomonas reinhardtii.

12 July 2018

1 reference

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Nuclear-gene targeting by using single-stranded DNA avoids illegitimate DNA integration in Chlamydomonas reinhardtii

12 July 2018

1 reference

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Decay of mRNAs targeted by RISC requires XRN1, the Ski complex, and the exosome

12 July 2018

1 reference

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The Genome of the Diatom Thalassiosira Pseudonana: Ecology, Evolution, and Metabolism

12 July 2018

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Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D

12 July 2018

1 reference

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Low temperature inhibits RNA silencing-mediated defence by the control of siRNA generation.

12 July 2018

1 reference

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Exploring plant genomes by RNA-induced gene silencing.

12 July 2018

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A blue-light-activated adenylyl cyclase mediates photoavoidance in Euglena gracilis

12 July 2018

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Temperature-dependent gene silencing by an expressed inverted repeat in Drosophila.

12 July 2018

1 reference

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Primary Production of the Biosphere: Integrating Terrestrial and Oceanic Components

12 July 2018

1 reference

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Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans

12 July 2018

1 reference

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Epigenetic silencing of a foreign gene in nuclear transformants of Chlamydomonas

12 July 2018

1 reference

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Identification of the UMP synthase gene by establishment of uracil auxotrophic mutants and the phenotypic complementation system in the marine diatom Phaeodactylum tricornutum

12 July 2018

1 reference

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Cucumber mosaic virus 2b protein inhibits RNA silencing pathways in green alga Chlamydomonas reinhardtii

26 September 2018

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Targeted gene silencing by RNA interference in Chlamydomonas.

26 September 2018

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Transient gene suppression in a red alga, Cyanidioschyzon merolae 10D.

26 September 2018

1 reference

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Nuclear gene targeting in Chlamydomonas as exemplified by disruption of the PHOT gene

26 September 2018

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Gene silencing by artificial microRNAs in Chlamydomonas.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187060

Highly specific gene silencing by artificial microRNAs in the unicellular alga Chlamydomonas reinhardtii.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187060

Unstable RNAi effects through epigenetic silencing of an inverted repeat transgene in Chlamydomonas reinhardtii

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187060

Two different clades of copia-like retrotransposons in the red alga, Porphyra yezoensis.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187060

Inhibition of pds gene expression via the RNA interference approach in Dunaliella salina (Chlorophyta).

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187060

Characterization of short interspersed elements (SINEs) in a red alga, Porphyra yezoensis

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187060

Untemplated oligoadenylation promotes degradation of RISC-cleaved transcripts.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187060

Characterization of a heat-shock-inducible hsp70 gene of the green alga Volvox carteri.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187060

Monomethyl histone H3 lysine 4 as an epigenetic mark for silenced euchromatin in Chlamydomonas.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187060

Molecular characterization of Entamoeba histolytica RNase III and AGO2, two RNA interference hallmark proteins.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187060

Functional genomics of eukaryotic photosynthesis using insertional mutagenesis of Chlamydomonas reinhardtii.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187060

Tandem inverted repeat system for selection of effective transgenic RNAi strains in Chlamydomonas.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187060

AtXRN4 degrades mRNA in Arabidopsis and its substrates include selected miRNA targets

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187060

Improvement of culture conditions and evidence for nuclear transformation by homologous recombination in a red alga, Cyanidioschyzon merolae 10D.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187060

Spreading of RNA targeting and DNA methylation in RNA silencing requires transcription of the target gene and a putative RNA-dependent RNA polymerase

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187060

Transgene and transposon silencing in Chlamydomonas reinhardtii by a DEAH-box RNA helicase

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187060

Volvoxrhodopsin, a light-regulated sensory photoreceptor of the spheroidal green alga Volvox carteri

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3187060

Computational estimation and experimental verification of off-target silencing during posttranscriptional gene silencing in plants

26 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21803865

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

An inducible artificial microRNA system for Chlamydomonas reinhardtii confirms a key role for heat shock factor 1 in regulating thermotolerance

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21803865

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/EC.05106-11

1 reference

7 August 2017

1 reference

7 August 2017

1 reference