Adenovirus composition, proteolysis, and disassembly studied by in-depth qualitative and quantitative proteomics (Q35109904)

6 August 2017

title

Adenovirus composition, proteolysis, and disassembly studied by in-depth qualitative and quantitative proteomics (English)

1 reference

6 August 2017

1 reference

1 reference

Marco Benevento

1

1 reference

6 August 2017

Serena Di Palma

2

1 reference

6 August 2017

Joost Snijder

3

1 reference

6 August 2017

Crystal L Moyer

4

1 reference

6 August 2017

Vijay S Reddy

5

1 reference

6 August 2017

Glen R Nemerow

6

1 reference

6 August 2017

Albert J R Heck

7

1 reference

6 August 2017

language of work or name

English

0 references

publication date

3 March 2014

1 reference

Journal of Biological Chemistry

6 August 2017

published in

1 reference

6 August 2017

volume

289

1 reference

6 August 2017

issue

16

1 reference

6 August 2017

page(s)

11421-11430

1 reference

The cleaved N-terminus of pVI binds peripentonal hexons in mature adenovirus.

6 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Next-generation proteomics: towards an integrative view of proteome dynamics.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

The role of capsid maturation on adenovirus priming for sequential uncoating

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Selected reaction monitoring-based proteomics: workflows, potential, pitfalls and future directions

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Disulfide-bond formation by a single cysteine mutation in adenovirus protein VI impairs capsid release and membrane lysis

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Mass spectrometry-based proteomics and network biology

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

System-wide perturbation analysis with nearly complete coverage of the yeast proteome by single-shot ultra HPLC runs on a bench top Orbitrap

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Performance characteristics of a new hybrid quadrupole time-of-flight tandem mass spectrometer (TripleTOF 5600).

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Functional genetic and biophysical analyses of membrane disruption by human adenovirus

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Model of the Trimeric Fiber and Its Interactions with the Pentameric Penton Base of Human Adenovirus by Cryo-electron Microscopy

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Crystal Structure of Human Adenovirus at 3.5 Å Resolution

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Atomic Structure of Human Adenovirus by Cryo-EM Reveals Interactions Among Protein Networks

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Crystallization and preliminary X-ray diffraction analysis of human adenovirus

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Adenoviral vector-based strategies for cancer therapy

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Value of using multiple proteases for large-scale mass spectrometry-based proteomics

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Dual-pressure linear ion trap mass spectrometer improving the analysis of complex protein mixtures

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Adenoviruses: update on structure and function

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Insights into adenovirus host cell interactions from structural studies

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Presence of the adenovirus IVa2 protein at a single vertex of the mature virion

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Mechanism of adenovirus neutralization by Human alpha-defensins

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Higher-energy C-trap dissociation for peptide modification analysis.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Chimeric adenovirus 5/35 vector containing the clade C HIV gag gene induces a cross-reactive immune response against HIV.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

9 July 2018

The PeptideAtlas project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Adenovirus protein VI mediates membrane disruption following capsid disassembly.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Open source system for analyzing, validating, and storing protein identification data

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Switch from capsid protein import to adenovirus assembly by cleavage of nuclear transport signals

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Specific interactions of the adenovirus proteinase with the viral DNA, an 11-amino-acid viral peptide, and the cellular protein actin

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Genetic content and evolution of adenoviruses

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Crystallographic structure at 1.6-A resolution of the human adenovirus proteinase in a covalent complex with its 11-amino-acid peptide cofactor: insights on a new fold

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Structural stability of adenovirus type 5.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Cell receptors involved in adenovirus entry

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Molecular composition of the adenovirus type 2 virion

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

The proteinase polypeptide of adenovirus serotype 2 virions

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Genetic analysis of adenovirus type 2 III. Temperature sensitivity of processing viral proteins

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

An amazing sequence arrangement at the 5' ends of adenovirus 2 messenger RNA.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

Spliced segments at the 5′ terminus of adenovirus 2 late mRNA

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4036278

A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed.

9 July 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.537498

In-house construction of a UHPLC system enabling the identification of over 4000 protein groups in a single analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.537498

The need for a public proteomics repository

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.537498

Evaluation of metalloendopeptidase Lys-N protease performance under different sample handling conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.537498

Protease bias in absolute protein quantitation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.537498

Characterization of the adenovirus proteinase: substrate specificity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.537498

Analysis of the adenovirus type 5 proteome by liquid chromatography and tandem mass spectrometry methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.537498

The structure of the adenovirus capsid. II. The packing symmetry of hexon and its implications for viral architecture

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/24591515

12 December 2020

The Effect of Heat on the Anatomy of the Adenovirus

1 reference

https://pubmed.ncbi.nlm.nih.gov/24591515

12 December 2020

The coming age of complete, accurate, and ubiquitous proteomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/24591515

12 December 2020

Stepwise dismantling of adenovirus 2 during entry into cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/24591515

12 December 2020

Identifiers

DOI

10.1074/JBC.M113.537498

1 reference

6 August 2017

1 reference

6 August 2017

1 reference