Human Splicing Finder: an online bioinformatics tool to predict splicing signals (Q34973311)

5 August 2017

title

Human Splicing Finder: an online bioinformatics tool to predict splicing signals (English)

1 reference

5 August 2017

1 reference

Christophe Béroud

6

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Mireille Claustres

object named as

Mireille Claustres

5

1 reference

5 August 2017

Gwenaëlle Collod-Béroud

object named as

Gwenaëlle Collod-Béroud

4

1 reference

5 August 2017

author name string

François-Olivier Desmet

1

1 reference

5 August 2017

Dalil Hamroun

2

1 reference

5 August 2017

Marine Lalande

3

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5 August 2017

language of work or name

English

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publication date

1 April 2009

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5 August 2017

published in

Nucleic Acids Research

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5 August 2017

volume

37

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5 August 2017

issue

9

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5 August 2017

page(s)

e67

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Genetic regulation of MUC1 alternative splicing in human tissues

5 August 2017

cites work

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Guidelines for antisense oligonucleotide design and insight into splice-modulating mechanisms

8 July 2018

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FBN1 mutation screening of patients with Marfan syndrome and related disorders: detection of 46 novel FBN1 mutations.

8 July 2018

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8 July 2018

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Searching for splicing motifs.

8 July 2018

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8 July 2018

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8 July 2018

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Aberrant splicing is a common mutational mechanism in MKS1, a key player in Meckel-Gruber syndrome

8 July 2018

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8 July 2018

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Seemingly neutral polymorphic variants may confer immunity to splicing-inactivating mutations: a synonymous SNP in exon 5 of MCAD protects from deleterious mutations in a flanking exonic splicing enhancer

8 July 2018

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The Meckel-Gruber syndrome gene, MKS3, is mutated in Joubert syndrome

8 July 2018

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Aneurysm syndromes caused by mutations in the TGF-beta receptor

8 July 2018

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8 July 2018

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An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers

8 July 2018

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Comparative analysis identifies exonic splicing regulatory sequences--The complex definition of enhancers and silencers

8 July 2018

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Method of predicting splice sites based on signal interactions

8 July 2018

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RNA splicing manipulation: strategies to modify gene expression for a variety of therapeutic outcomes.

8 July 2018

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A syndrome of altered cardiovascular, craniofacial, neurocognitive and skeletal development caused by mutations in TGFBR1 or TGFBR2

8 July 2018

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Systematic identification and analysis of exonic splicing silencers.

8 July 2018

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RESCUE-ESE identifies candidate exonic splicing enhancers in vertebrate exons

8 July 2018

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Computational definition of sequence motifs governing constitutive exon splicing.

8 July 2018

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Silencer elements as possible inhibitors of pseudoexon splicing

8 July 2018

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The spliceosome: the most complex macromolecular machine in the cell?

8 July 2018

1 reference

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Update of the UMD-FBN1 mutation database and creation of an FBN1 polymorphism database

8 July 2018

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ESEfinder: A web resource to identify exonic splicing enhancers

8 July 2018

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Comprehensive proteomic analysis of the human spliceosome

8 July 2018

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BRCA2 T2722R is a deleterious allele that causes exon skipping

8 July 2018

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Predictive identification of exonic splicing enhancers in human genes

8 July 2018

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Alternative pre-mRNA splicing and proteome expansion in metazoans

8 July 2018

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Premature termination mutations in FBN1: distinct effects on differential allelic expression and on protein and clinical phenotypes

8 July 2018

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Listening to silence and understanding nonsense: exonic mutations that affect splicing

8 July 2018

1 reference

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Exon Identity Established through Differential Antagonism between Exonic Splicing Silencer-Bound hnRNP A1 and Enhancer-Bound SR Proteins

8 July 2018

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Ten novel FBN2 mutations in congenital contractural arachnodactyly: delineation of the molecular pathogenesis and clinical phenotype

8 July 2018

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Genotype and phenotype analysis of 171 patients referred for molecular study of the fibrillin-1 gene FBN1 because of suspected Marfan syndrome

8 July 2018

1 reference

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Mild muscular dystrophy due to a nonsense mutation in the LAMA2 gene resulting in exon skipping

8 July 2018

1 reference

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Three novel types of splicing aberrations in the tuberous sclerosis TSC2 gene caused by mutations apart from splice consensus sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2685110

Exonic splicing enhancers: mechanism of action, diversity and role in human genetic diseases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2685110

UMD (Universal mutation database): a generic software to build and analyze locus-specific databases

8 July 2018

1 reference

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Mutation nomenclature extensions and suggestions to describe complex mutations: a discussion

8 July 2018

1 reference

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Splicing modulation of integrin beta4 pre-mRNA carrying a branch point mutation underlies epidermolysis bullosa with pyloric atresia undergoing spontaneous amelioration with ageing

8 July 2018

1 reference

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A point mutation in an intronic branch site results in aberrant splicing of COL5A1 and in Ehlers-Danlos syndrome type II in two British families

8 July 2018

1 reference

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Modification of splicing in the dystrophin gene in cultured Mdx muscle cells by antisense oligoribonucleotides

8 July 2018

1 reference

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A BRCA1 nonsense mutation causes exon skipping

8 July 2018

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Classification of introns: U2-type or U12-type

8 July 2018

1 reference

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A rare branch-point mutation is associated with missplicing of fibrillin-2 in a large family with congenital contractural arachnodactyly.

8 July 2018

1 reference

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Familial occurrence of typical and severe lethal congenital contractural arachnodactyly caused by missplicing of exon 34 of fibrillin-2.

8 July 2018

1 reference

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An intronic mutation in a lariat branchpoint sequence is a direct cause of an inherited human disorder (fish-eye disease).

8 July 2018

1 reference

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Four novel FBN1 mutations: significance for mutant transcript level and EGF-like domain calcium binding in the pathogenesis of Marfan syndrome

8 July 2018

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Mutations in the fibrillin gene responsible for dominant ectopia lentis and neonatal Marfan syndrome

8 July 2018

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Prenatal diagnosis and a donor splice site mutation in fibrillin in a family with Marfan syndrome.

8 July 2018

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

8 July 2018

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Recurrent mis-splicing of fibrillin exon 32 in two patients with neonatal Marfan syndrome

8 July 2018

1 reference

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Fifteen novel FBN1 mutations causing Marfan syndrome detected by heteroduplex analysis of genomic amplicons

8 July 2018

1 reference

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RNA splice junctions of different classes of eukaryotes: sequence statistics and functional implications in gene expression

8 July 2018

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Intricate combinatorial patterns of exon splicing generate multiple regulated troponin T isoforms from a single gene

8 July 2018

1 reference

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The 5' splice site: phylogenetic evolution and variable geometry of association with U1RNA.

8 July 2018

1 reference

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Exon definition may facilitate splice site selection in RNAs with multiple exons

8 July 2018

1 reference

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Biochemical Mechanisms of Constitutive and Regulated Pre-mRNA Splicing

8 July 2018

1 reference

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Spliced segments at the 5′ terminus of adenovirus 2 late mRNA

8 July 2018

1 reference

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The FBN2 gene: new mutations, locus-specific database (Universal Mutation Database FBN2), and genotype-phenotype correlations

8 July 2018

1 reference

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Evaluation of in silico splice tools for decision-making in molecular diagnosis.

26 October 2018

1 reference

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Unclassified variants identified in BRCA1 exon 11: Consequences on splicing.

26 October 2018

1 reference

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EuSplice: a unified resource for the analysis of splice signals and alternative splicing in eukaryotic genes

26 October 2018

1 reference

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A nonsense mutation-created intraexonic splice site is active in the lymphocytes, but not in the skeletal muscle of a DMD patient.

26 October 2018

1 reference

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Lariat branch point mutation in the dysferlin gene with mild limb-girdle muscular dystrophy

26 October 2018

1 reference

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A class of human exons with predicted distant branch points revealed by analysis of AG dinucleotide exclusion zones

26 October 2018

1 reference

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An exon skipping-associated nonsense mutation in the dystrophin gene uncovers a complex interplay between multiple antagonistic splicing elements

26 October 2018

1 reference

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Systematic mRNA analysis for the effect of MLH1 and MSH2 missense and silent mutations on aberrant splicing.

26 October 2018

1 reference

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PMM2 intronic branch-site mutations in CDG-Ia

26 October 2018

1 reference

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Molecular pathology of Shprintzen-Goldberg syndrome

26 October 2018

1 reference

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Computational searches for splicing signals.

26 October 2018

1 reference

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UMD (Universal Mutation Database): 2005 update

26 October 2018

1 reference

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Automated splicing mutation analysis by information theory

26 October 2018

1 reference

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Disruption of exonic splicing enhancer elements is the principal cause of exon skipping associated with seven nonsense or missense alleles of NF1.

26 October 2018

1 reference

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A point mutation in the lariat branch point of intron 6 of NPC1 as the cause of abnormal pre-mRNA splicing in Niemann-Pick type C disease

26 October 2018

1 reference

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RNA analysis reveals splicing mutations and loss of expression defects in MLH1 and BRCA1.

26 October 2018

1 reference

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Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals

26 October 2018

1 reference

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FBN2 mutation associated with manifestations of Marfan syndrome and congenital contractural arachnodactyly

26 October 2018

1 reference

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Detection of thirty novel FBN1 mutations in patients with Marfan syndrome or a related fibrillinopathy

26 October 2018

1 reference

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Two essential splice lariat branchpoint sequences in one intron in a xeroderma pigmentosum DNA repair gene: mutations result in reduced XPC mRNA levels that correlate with cancer risk.

26 October 2018

1 reference

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Mutation screening of the fibrillin-1 (FBN1) gene in 76 unrelated patients with Marfan syndrome or Marfanoid features leads to the identification of 11 novel and three previously reported mutations

26 October 2018

1 reference

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Marfan syndrome caused by a mutation in FBN1 that gives rise to cryptic splicing and a 33 nucleotide insertion in the coding sequence

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2685110

Molecular analysis of eight mutations in FBN1.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2685110

A large fraction of unclassified variants of the mismatch repair genesMLH1andMSH2is associated with splicing defects

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2685110

The importance of mutation detection in Marfan syndrome and Marfan-related disorders: report of 193 FBN1 mutations

26 October 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/19339519

12 December 2020

Denaturing HPLC-identified novel FBN1 mutations, polymorphisms, and sequence variants in Marfan syndrome and related connective tissue disorders

1 reference

https://pubmed.ncbi.nlm.nih.gov/19339519

12 December 2020

Alternative splicing of exon 37 of FBN1 deletes part of an 'eight-cysteine' domain resulting in the Marfan syndrome

1 reference

https://pubmed.ncbi.nlm.nih.gov/19339519

12 December 2020

A new locus-specific database (LSDB) for mutations in theTGFBR2gene: UMD-TGFBR2

1 reference

https://pubmed.ncbi.nlm.nih.gov/19339519

12 December 2020

Novel exon skipping mutation in the fibrillin-1 gene: Two 'hot spots' for the neonatal Marfan syndrome

1 reference

https://pubmed.ncbi.nlm.nih.gov/19339519

12 December 2020

A branch site mutation leading to aberrant splicing of the human tyrosine hydroxylase gene in a child with a severe extrapyramidal movement disorder

1 reference

https://pubmed.ncbi.nlm.nih.gov/19339519

12 December 2020

Mutant fibrillin-1 monomers lacking EGF-like domains disrupt microfibril assembly and cause severe marfan syndrome

1 reference

https://pubmed.ncbi.nlm.nih.gov/19339519

12 December 2020

Comparison of heteroduplex analysis, direct sequencing, and enzyme mismatch cleavage for detecting mutations in a large gene, FBN1

1 reference

https://pubmed.ncbi.nlm.nih.gov/19339519

12 December 2020

Two novel fibrillin-1 mutations resulting in premature termination codons but in different mutant transcript levels and clinical phenotypes

1 reference

https://pubmed.ncbi.nlm.nih.gov/19339519

12 December 2020

Enzymatic mutation detection (EMD) of novel mutations (R565X and R1523X) in the FBN1 gene of patients with Marfan syndrome using T4 endonuclease VII

1 reference

https://pubmed.ncbi.nlm.nih.gov/19339519

12 December 2020

Clustering of mutations associated with mild Marfan-like phenotypes in the 3? region ofFBN1 suggests a potential genotype-phenotype correlation

1 reference

https://pubmed.ncbi.nlm.nih.gov/19339519

12 December 2020

Human-mouse comparative analysis reveals that branch-site plasticity contributes to splicing regulation

1 reference

https://pubmed.ncbi.nlm.nih.gov/19339519

12 December 2020

Clustering of FBN2 mutations in patients with congenital contractural arachnodactyly indicates an important role of the domains encoded by exons 24 through 34 during human development

1 reference

https://pubmed.ncbi.nlm.nih.gov/19339519

12 December 2020

A strong exonic splicing enhancer in dystrophin exon 19 achieve proper splicing without an upstream polypyrimidine tract

1 reference

https://pubmed.ncbi.nlm.nih.gov/19339519

12 December 2020

Fibrillin gene (FBN1) mutations in Japanese patients with Marfan syndrome

1 reference

https://pubmed.ncbi.nlm.nih.gov/19339519

12 December 2020

FBN1 exon 2 splicing error in a patient with Marfan syndrome

1 reference

https://pubmed.ncbi.nlm.nih.gov/19339519

12 December 2020

A novel deletion in the GH1 gene including the IVS3 branch site responsible for autosomal dominant isolated growth hormone deficiency

1 reference

https://pubmed.ncbi.nlm.nih.gov/19339519

12 December 2020

Genetic variation at a splicing branch point in intron 9 of the low density lipoprotein (LDL)-receptor gene: a rare mutation that disrupts mRNA splicing in a patient with familial hypercholesterolaemia and a common polymorphism

1 reference

https://pubmed.ncbi.nlm.nih.gov/19339519

12 December 2020

Multiexon skipping leading to an artificial DMD protein lacking amino acids from exons 45 through 55 could rescue up to 63% of patients with Duchenne muscular dystrophy

1 reference

https://pubmed.ncbi.nlm.nih.gov/19339519

12 December 2020

Identifiers

DOI

10.1093/NAR/GKP215

1 reference

5 August 2017

1 reference

5 August 2017

1 reference