Conservation of complex knotting and slipknotting patterns in proteins (Q34280376)

1 August 2017

title

Conservation of complex knotting and slipknotting patterns in proteins (English)

1 reference

1 August 2017

5

Andrzej Stasiak

1 reference

1 August 2017

Joanna I Sułkowska

1

1 reference

1 August 2017

Eric J Rawdon

series ordinal

2

1 reference

1 August 2017

Kenneth C Millett

series ordinal

3

1 reference

1 August 2017

Jose N Onuchic

series ordinal

4

1 reference

1 August 2017

language of work or name

English

0 references

publication date

8 June 2012

1 reference

Proceedings of the National Academy of Sciences of the United States of America

1 August 2017

published in

1 reference

1 August 2017

volume

109

1 reference

1 August 2017

issue

26

1 reference

1 August 2017

page(s)

E1715-23

1 reference

Protein stabilization in a highly knotted protein polymer

1 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

Structure and folding of a designed knotted protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

Structural classification of proteins and structural genomics: new insights into protein folding and evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

Slipknotting upon native-like loop formation in a trefoil knot protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

Knotted vs. unknotted proteins: evidence of knot-promoting loops

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

The energy landscape, folding pathways and the kinetics of a knotted protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

Experimental detection of knotted conformations in denatured proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

A Stevedore's protein knot

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

The size of knots in polymers.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

Advances and pitfalls of protein structural alignment

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

Tightening the knot in phytochrome by single-molecule atomic force microscopy

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

Dodging the crisis of folding proteins with knots

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

Sequence-specific size, structure, and stability of tight protein knots

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

Stabilizing effect of knots on proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

3D visualization software to analyze topological outcomes of topoisomerase reactions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

The crystal structure of DehI reveals a new alpha-haloacid dehalogenase fold and active-site mechanism

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

pKNOT: the protein KNOT web server

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

Hinge Atlas: relating protein sequence to sites of structural flexibility

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

The folding mechanics of a knotted protein

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

Intricate knots in proteins: Function and evolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

ArchPRED: a template based loop structure prediction server.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

Statistics of knots, geometry of conformations, and evolution of proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

Pfam: clans, web tools and services

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

Origin of mechanical strength of bovine carbonic anhydrase studied by molecular dynamics simulation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

Simulations of action of DNA topoisomerases to investigate boundaries and shapes of spaces of knots

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

MUSCLE: multiple sequence alignment with high accuracy and high throughput

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

A deeply knotted protein structure and how it might fold.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

6 July 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

Mapping the protein universe

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3387036

Are there knots in proteins?

6 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1205918109

Identification of rare slipknots in proteins and their implications for stability and folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1205918109

Force measurement and inhibitor binding assay of monomer and engineered dimer of bovine carbonic anhydrase B.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1205918109

A comparison of the folding of two knotted proteins: YbeA and YibK.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1205918109

Tightness of random knotting

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1205918109

Bio3d: an R package for the comparative analysis of protein structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1205918109

A new polynomial invariant of knots and links

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1205918109

The importance of being knotted: effects of the C-terminal knot structure on enzymatic and mechanical properties of bovine carbonic anhydrase II

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/22685208

12 December 2020

Translocation of a knotted polypeptide through a pore

1 reference

https://pubmed.ncbi.nlm.nih.gov/22685208

12 December 2020

Predicting atomic details of the unfolding pathway for YibK, a knotted protein from the SPOUT superfamily

1 reference

https://pubmed.ncbi.nlm.nih.gov/22685208

12 December 2020

The folding of knotted proteins: insights from lattice simulations

1 reference

https://pubmed.ncbi.nlm.nih.gov/22685208

12 December 2020

Protein folding: To knot or not to knot?

1 reference

https://pubmed.ncbi.nlm.nih.gov/22685208

12 December 2020

Identifiers

DOI

10.1073/PNAS.1205918109

1 reference

1 August 2017

0 references

1 reference

1 August 2017

1 reference