Functional and computational analysis of amino acid patterns predictive of type III secretion system substrates in Pseudomonas syringae (Q34257073)

31 July 2017

title

Functional and computational analysis of amino acid patterns predictive of type III secretion system substrates in Pseudomonas syringae (English)

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31 July 2017

Pseudomonas syringae

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3

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31 July 2017

Lisa M Schechter

1

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31 July 2017

Joy C Valenta

series ordinal

2

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31 July 2017

Alan Collmer

series ordinal

4

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31 July 2017

Eric Sakk

series ordinal

5

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31 July 2017

language of work or name

English

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publication date

27 April 2012

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31 July 2017

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31 July 2017

volume

7

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31 July 2017

issue

4

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31 July 2017

page(s)

e36038

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Creative Commons CC0 License

31 July 2017

copyright license

start time

27 April 2012

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April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

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cites work

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Impact of the N-terminal secretor domain on YopD translocator function in Yersinia pseudotuberculosis type III secretion

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Translocation of surface-localized effectors in type III secretion

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T3SEdb: data warehousing of virulence effectors secreted by the bacterial Type III Secretion System

6 July 2018

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Discovery of novel secreted virulence factors from Salmonella enterica serovar Typhimurium by proteomic analysis of culture supernatants

6 July 2018

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Computational prediction of type III and IV secreted effectors in gram-negative bacteria

6 July 2018

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A multi-pronged search for a common structural motif in the secretion signal of Salmonella enterica serovar Typhimurium type III effector proteins

6 July 2018

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Targeting effectors: the molecular recognition of Type III secreted proteins

6 July 2018

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Computational prediction of type III secreted proteins from gram-negative bacteria

6 July 2018

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A comprehensive proteomic analysis of the type III secretome of Citrobacter rodentium

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The Chlamydia type III secretion system C-ring engages a chaperone-effector protein complex

6 July 2018

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Blocking and triggering of plant immunity by Pseudomonas syringae effector AvrPto

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The targeting of plant cellular systems by injected type III effector proteins

6 July 2018

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Common themes in the design and function of bacterial effectors

6 July 2018

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Prediction of type III secretion signals in genomes of gram-negative bacteria

6 July 2018

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Elucidation of a pH-folding switch in the Pseudomonas syringae effector protein AvrPto

6 July 2018

1 reference

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Sequence-based prediction of type III secreted proteins

6 July 2018

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Accurate prediction of secreted substrates and identification of a conserved putative secretion signal for type III secretion systems

6 July 2018

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Deletions in the repertoire of Pseudomonas syringae pv. tomato DC3000 type III secretion effector genes reveal functional overlap among effectors

6 July 2018

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Coiled-coils in type III secretion systems: structural flexibility, disorder and biological implications.

6 July 2018

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Secretion of flagellin by the LEE-encoded type III secretion system of enteropathogenic Escherichia coli

6 July 2018

1 reference

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Pseudomonas syringae type III secretion system effectors: repertoires in search of functions

6 July 2018

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Secreted proteins from Ralstonia solanacearum: a hundred tricks to kill a plant.

6 July 2018

1 reference

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Yersinia enterocolitica type III secretion of YopR requires a structure in its mRNA

6 July 2018

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EspC translocation into epithelial cells by enteropathogenic Escherichia coli requires a concerted participation of type V and III secretion systems

6 July 2018

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Injection of flagellin into the host cell cytosol by Salmonella enterica serotype Typhimurium

6 July 2018

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Identification of harpins in Pseudomonas syringae pv. tomato DC3000, which are functionally similar to HrpK1 in promoting translocation of type III secretion system effectors

6 July 2018

1 reference

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Protein delivery into eukaryotic cells by type III secretion machines

6 July 2018

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Bioinformatics-enabled identification of the HrpL regulon and type III secretion system effector proteins of Pseudomonas syringae pv. phaseolicola 1448A.

6 July 2018

1 reference

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Whole-genome expression profiling defines the HrpL regulon of Pseudomonas syringae pv. tomato DC3000, allows de novo reconstruction of the Hrp cis clement, and identifies novel coregulated genes

6 July 2018

1 reference

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Closing the circle on the discovery of genes encoding Hrp regulon members and type III secretion system effectors in the genomes of three model Pseudomonas syringae strains

6 July 2018

1 reference

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Genome-wide gene expression analysis of Pseudomonas syringae pv. tomato DC3000 reveals overlapping and distinct pathways regulated by hrpL and hrpRS.

6 July 2018

1 reference

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Subterfuge and manipulation: type III effector proteins of phytopathogenic bacteria

6 July 2018

1 reference

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The first 45 amino acids of SopA are necessary for InvB binding and SPI-1 secretion

6 July 2018

1 reference

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Generation and Characterization of Tn5 Insertion Mutations in Pseudomonas syringae pv. tomato.

6 July 2018

1 reference

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Chaperone release and unfolding of substrates in type III secretion

6 July 2018

1 reference

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Rejection of impassable substrates by Yersinia type III secretion machines

6 July 2018

1 reference

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A directed screen for chlamydial proteins secreted by a type III mechanism identifies a translocated protein and numerous other new candidates

6 July 2018

1 reference

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A high-throughput, near-saturating screen for type III effector genes from Pseudomonas syringae

6 July 2018

1 reference

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Process of protein transport by the type III secretion system

6 July 2018

1 reference

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A genetic screen to isolate type III effectors translocated into pepper cells during Xanthomonas infection

6 July 2018

1 reference

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The secretion signal of YopN, a regulatory protein of the Yersinia enterocolitica type III secretion pathway.

6 July 2018

1 reference

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The Pseudomonas syringae HopPtoV protein is secreted in culture and translocated into plant cells via the type III protein secretion system in a manner dependent on the ShcV type III chaperone

6 July 2018

1 reference

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Salmonella type III secretion-associated chaperones confer secretion-pathway specificity

6 July 2018

1 reference

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A predicted ABC transporter, FtsEX, is needed for cell division in Escherichia coli

6 July 2018

1 reference

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Pseudomonas syringae type III secretion system targeting signals and novel effectors studied with a Cya translocation reporter

6 July 2018

1 reference

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Yersinia yopQ mRNA encodes a bipartite type III secretion signal in the first 15 codons

6 July 2018

1 reference

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Translocated Intimin Receptor and Its Chaperone Interact with ATPase of the Type III Secretion Apparatus of EnteropathogenicEscherichia coli

6 July 2018

1 reference

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6 July 2018

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The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000

6 July 2018

1 reference

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How Bacteria Assemble Flagella

6 July 2018

1 reference

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Identifying type III effectors of plant pathogens and analyzing their interaction with plant cells.

6 July 2018

1 reference

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Molecular and functional analysis of the type III secretion signal of the Salmonella enterica InvJ protein

6 July 2018

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The Salmonella enterica serotype typhimurium effector proteins SipA, SopA, SopB, SopD, and SopE2 act in concert to induce diarrhea in calves.

6 July 2018

1 reference

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Yop fusions to tightly folded protein domains and their effects on Yersinia enterocolitica type III secretion.

6 July 2018

1 reference

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Genomewide identification of proteins secreted by the Hrp type III protein secretion system of Pseudomonas syringae pv. tomato DC3000

6 July 2018

1 reference

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A functional screen for the type III (Hrp) secretome of the plant pathogen Pseudomonas syringae.

6 July 2018

1 reference

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Molecular characterization of type III secretion signals via analysis of synthetic N-terminal amino acid sequences

6 July 2018

1 reference

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YplA is exported by the Ysc, Ysa, and flagellar type III secretion systems of Yersinia enterocolitica

6 July 2018

1 reference

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Yersinia YopE is targeted for type III secretion by N-terminal, not mRNA, signals

6 July 2018

1 reference

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A Salmonella inositol polyphosphatase acts in conjunction with other bacterial effectors to promote host cell actin cytoskeleton rearrangements and bacterial internalization

6 July 2018

1 reference

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Molecular signals required for type III secretion and translocation of the Xanthomonas campestris AvrBs2 protein to pepper plants

6 July 2018

1 reference

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Competition between the Yops of Yersinia enterocolitica for delivery into eukaryotic cells: role of the SycE chaperone binding domain of YopE.

6 July 2018

1 reference

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Reciprocal secretion of proteins by the bacterial type III machines of plant and animal pathogens suggests universal recognition of mRNA targeting signals

6 July 2018

1 reference

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A cloned Erwinia chrysanthemi Hrp (type III protein secretion) system functions in Escherichia coli to deliver Pseudomonas syringae Avr signals to plant cells and to secrete Avr proteins in culture

6 July 2018

1 reference

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A mRNA signal for the type III secretion of Yop proteins by Yersinia enterocolitica

6 July 2018

1 reference

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Two independent type III secretion mechanisms for YopE in Yersinia enterocolitica

6 July 2018

1 reference

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Delineation and mutational analysis of the Yersinia pseudotuberculosis YopE domains which mediate translocation across bacterial and eukaryotic cellular membranes

6 July 2018

1 reference

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Identification of the YopE and YopH domains required for secretion and internalization into the cytosol of macrophages, using the cyaA gene fusion approach

6 July 2018

1 reference

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Bacterial blight of soybean: regulation of a pathogen gene determining host cultivar specificity

6 July 2018

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Small, stable shuttle vectors for use in Xanthomonas.

6 July 2018

1 reference

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A common structural motif in the binding of virulence factors to bacterial secretion chaperones

6 July 2018

1 reference

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The cytosolic SycE and SycH chaperones of Yersinia protect the region of YopE and YopH involved in translocation across eukaryotic cell membranes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0036038

High-accuracy prediction of bacterial type III secreted effectors based on position-specific amino acid composition profiles.

21 January 2018

1 reference

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Multiple approaches to a complete inventory of Pseudomonas syringae pv. tomato DC3000 type III secretion system effector proteins.

21 January 2018

1 reference

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Identification of novel Ralstonia solanacearum type III effector proteins through translocation analysis of hrpB-regulated gene products

21 January 2018

1 reference

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An introduction to ROC analysis

21 January 2018

1 reference

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Areas beneath the relative operating characteristics (ROC) and relative operating levels (ROL) curves: Statistical significance and interpretation

21 January 2018

1 reference

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Genome-wide identification of a large repertoire of Ralstonia solanacearum type III effector proteins by a new functional screen

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22558318

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A pseudomonas syringae pv. tomato DC3000 Hrp (Type III secretion) deletion mutant expressing the Hrp system of bean pathogen P. syringae pv. syringae 61 retains normal host specificity for tomato

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22558318

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0036038

1 reference

31 July 2017

0 references

1 reference

31 July 2017

1 reference