Genetic flexibility of regulatory networks (Q34059313)

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7 February 2020

title

Genetic flexibility of regulatory networks (English)

1 reference

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7 February 2020

5

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7 February 2020

author name string

Alexander Hunziker

1

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7 February 2020

Csaba Tuboly

2

1 reference

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7 February 2020

Péter Horváth

3

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7 February 2020

Sandeep Krishna

4

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7 February 2020

language of work or name

English

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publication date

6 July 2010

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7 February 2020

number of pages

6

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Proceedings of the National Academy of Sciences of the United States of America

inferred from page(s)

published in

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7 February 2020

volume

107

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7 February 2020

issue

29

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7 February 2020

page(s)

12998-13003

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Next-generation synthetic gene networks

7 February 2020

cites work

1 reference

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Relation of intracellular signal levels and promoter activities in the gal regulon of Escherichia coli

5 July 2018

1 reference

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Dynamic features of gene expression control by small regulatory RNAs.

5 July 2018

1 reference

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EcoCyc: a comprehensive view of Escherichia coli biology

5 July 2018

1 reference

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The incoherent feed-forward loop can generate non-monotonic input functions for genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919941

Diverse two-dimensional input functions control bacterial sugar genes

5 July 2018

1 reference

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Recombineering: genetic engineering in bacteria using homologous recombination

5 July 2018

1 reference

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Programming gene expression with combinatorial promoters

5 July 2018

1 reference

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Gene duplication and the adaptive evolution of a classic genetic switch

5 July 2018

1 reference

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Combinatorial promoter design for engineering noisy gene expression

5 July 2018

1 reference

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Combinatorial transcriptional control of the lactose operon of Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919941

Plasticity of the cis-regulatory input function of a gene

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919941

Expression divergence between duplicate genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919941

A gamut of loops: meandering DNA.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919941

Transcriptional interference--a crash course

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919941

GalR represses galP1 by inhibiting the rate-determining open complex formation through RNA polymerase contact: a GalR negative control mutant

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919941

DNA trajectory in the Gal repressosome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919941

Transcription through the roadblocks: the role of RNA polymerase cooperation

5 July 2018

1 reference

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On schemes of combinatorial transcription logic

5 July 2018

1 reference

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Transcriptional repression: the long and the short of it.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919941

Metabolic modeling of microbial strains in silico.

5 July 2018

1 reference

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Regulation of the L-arabinose operon of Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919941

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919941

Transcription regulation by repressosome and by RNA polymerase contact

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919941

GalR mutants defective in repressosome formation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919941

Genomic cis-regulatory logic: experimental and computational analysis of a sea urchin gene

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919941

Histone-like protein HU as a specific transcriptional regulator: co-factor role in repression of gal transcription by GAL repressor.

5 July 2018

1 reference

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Genetic studies of the Lac repressor. XV: 4000 single amino acid substitutions and analysis of the resulting phenotypes on the basis of the protein structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919941

Homeostasis and Differentiation in Random Genetic Control Networks

5 July 2018

1 reference

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Cyclic adenosine monophosphate in bacteria

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919941

Mutations that reduce expression from the P2 promoter of the Escherichia coli galactose operon.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919941

Multipartite genetic control elements: communication by DNA loop

5 July 2018

1 reference

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Consensus DNA site for the Escherichia coli catabolite gene activator protein (CAP): CAP exhibits a 450-fold higher affinity for the consensus DNA site than for the E. coli lac DNA site

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919941

Substitution of 2 base pairs (1 base pair per DNA half-site) within the Escherichia coli lac promoter DNA site for catabolite gene activator protein places the lac promoter in the FNR regulon

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919941

Control of gal transcription through DNA looping: inhibition of the initial transcribing complex

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2919941

Predicting gene expression from sequence

5 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0915003107

Axiom of determining transcription start points by RNA polymerase in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0915003107

Genetic studies of the lac repressor. XIV. Analysis of 4000 altered Escherichia coli lac repressors reveals essential and non-essential residues, as well as "spacers" which do not require a specific sequence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0915003107

Duplicate genes increase gene expression diversity within and between species.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0915003107

Evolvability and hierarchy in rewired bacterial gene networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0915003107

Repression of lac promoter as a function of distance, phase and quality of an auxiliary lac operator

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/20615961

12 December 2020

Signal integration in the galactose network of Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/20615961

12 December 2020

https://pubmed.ncbi.nlm.nih.gov/20615961

1 reference

12 December 2020

Where are the pseudogenes in bacterial genomes?

1 reference

https://pubmed.ncbi.nlm.nih.gov/20615961

12 December 2020

Identification of promoters of Escherichia coli and phage in transcription section plasmid pSA850

1 reference

https://pubmed.ncbi.nlm.nih.gov/20615961

12 December 2020

Identifiers

DOI

10.1073/PNAS.0915003107

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20615961%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

0 references

1 reference

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7 February 2020

PubMed publication ID

20615961

1 reference