The microbiome in inflammatory bowel disease: current status and the future ahead (Q33664898)

28 July 2017

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title

The microbiome in inflammatory bowel disease: current status and the future ahead (English)

1 reference

inflammatory bowel diseases

28 July 2017

main subject

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3

Dirk Gevers

1 reference

28 July 2017

2

Ramnik J Xavier

1 reference

28 July 2017

Aleksandar D Kostic

1

1 reference

28 July 2017

language of work or name

English

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publication date

19 February 2014

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28 July 2017

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28 July 2017

volume

146

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28 July 2017

issue

6

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28 July 2017

page(s)

1489-1499

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The treatment-naive microbiome in new-onset Crohn's disease

28 July 2017

cites work

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Alteration of intestinal dysbiosis by fecal microbiota transplantation does not induce remission in patients with chronic active ulcerative colitis

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21 June 2018

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21 June 2018

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21 June 2018

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Safety, tolerability, and clinical response after fecal transplantation in children and young adults with ulcerative colitis

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease

21 June 2018

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21 June 2018

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Microbiota and innate immunity in intestinal inflammation and neoplasia

21 June 2018

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21 June 2018

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Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease

21 June 2018

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Toward an understanding of changes in diversity associated with fecal microbiome transplantation based on 16S rRNA gene deep sequencing

21 June 2018

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The colonic microbiota in health and disease.

21 June 2018

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The microbiome and inflammatory bowel disease: is there a therapeutic role for fecal microbiota transplantation?

21 June 2018

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A metagenome-wide association study of gut microbiota in type 2 diabetes

21 June 2018

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Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

21 June 2018

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Functional predictions from inference and observation in sequence-based inflammatory bowel disease research

21 June 2018

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Diversity, stability and resilience of the human gut microbiota

21 June 2018

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The role of the gut microbiota in nutrition and health.

21 June 2018

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The human microbiome: ecosystem resilience and health

21 June 2018

1 reference

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Systematic review: faecal microbiota transplantation in the management of inflammatory bowel disease

21 June 2018

1 reference

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Collateral effects of antibiotics on mammalian gut microbiomes

21 June 2018

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Dietary-fat-induced taurocholic acid promotes pathobiont expansion and colitis in Il10-/- mice

21 June 2018

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Structure, function and diversity of the healthy human microbiome

21 June 2018

1 reference

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The human gut microbiome: current knowledge, challenges, and future directions

21 June 2018

1 reference

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Microbiota-targeted therapies: an ecological perspective

21 June 2018

1 reference

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Interactions between the microbiota and the immune system

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Bacterial biogeography of the human digestive tract

21 June 2018

1 reference

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Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease

21 June 2018

1 reference

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Colonic mucosa-associated microbiota is influenced by an interaction of Crohn disease and FUT2 (Secretor) genotype

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Genomic analysis identifies association of Fusobacterium with colorectal carcinoma

21 June 2018

1 reference

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Increasing Incidence and Prevalence of the Inflammatory Bowel Diseases With Time, Based on Systematic Review

21 June 2018

1 reference

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The antibacterial lectin RegIIIgamma promotes the spatial segregation of microbiota and host in the intestine

21 June 2018

1 reference

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Successful transmission of a retrovirus depends on the commensal microbiota

21 June 2018

1 reference

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Linking long-term dietary patterns with gut microbial enterotypes

21 June 2018

1 reference

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Host-microbe relationships in inflammatory bowel disease detected by bacterial and metaproteomic analysis of the mucosal-luminal interface

21 June 2018

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Genetics and pathogenesis of inflammatory bowel disease

21 June 2018

1 reference

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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

21 June 2018

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Development of the human gastrointestinal microbiota and insights from high-throughput sequencing

21 June 2018

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Unravelling the effects of the environment and host genotype on the gut microbiome

21 June 2018

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Antibiotic therapy in inflammatory bowel disease: a systematic review and meta-analysis.

21 June 2018

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Characterization of bacteria in biopsies of colon and stools by high throughput sequencing of the V2 region of bacterial 16S rRNA gene in human

21 June 2018

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Antibiotic treatment alters the colonic mucus layer and predisposes the host to exacerbated Citrobacter rodentium-induced colitis.

21 June 2018

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Desulfovibrio Bacterial Species Are Increased in Ulcerative Colitis

21 June 2018

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Differential adaptation of human gut microbiota to bariatric surgery-induced weight loss: links with metabolic and low-grade inflammation markers

21 June 2018

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Dysbiosis of fecal microbiota in Crohn's disease patients as revealed by a custom phylogenetic microarray

21 June 2018

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Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation

21 June 2018

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Disease phenotype and genotype are associated with shifts in intestinal-associated microbiota in inflammatory bowel diseases

21 June 2018

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The two mucus layers of colon are organized by the MUC2 mucin, whereas the outer layer is a legislator of host-microbial interactions

21 June 2018

1 reference

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Virus-plus-susceptibility gene interaction determines Crohn's disease gene Atg16L1 phenotypes in intestine

21 June 2018

1 reference

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Composition, variability, and temporal stability of the intestinal microbiota of the elderly

21 June 2018

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Fucosyltransferase 2 (FUT2) non-secretor status is associated with Crohn's disease

21 June 2018

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A human gut microbial gene catalogue established by metagenomic sequencing

21 June 2018

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Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults

21 June 2018

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Microbiota and SCFA in lean and overweight healthy subjects

21 June 2018

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Commensal bacteria can enter colonic epithelial cells and induce proinflammatory cytokine secretion: a possible pathogenic mechanism of ulcerative colitis

21 June 2018

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Molecular diversity of Escherichia coli in the human gut: new ecological evidence supporting the role of adherent-invasive E. coli (AIEC) in Crohn's disease

21 June 2018

1 reference

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Probiotics, prebiotics and competitive exclusion for prophylaxis against bacterial disease

21 June 2018

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A core gut microbiome in obese and lean twins

21 June 2018

1 reference

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Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients

21 June 2018

1 reference

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Fungi and inflammatory bowel diseases: Alterations of composition and diversity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Evolution of mammals and their gut microbes

21 June 2018

1 reference

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Molecular analysis of the gut microbiota of identical twins with Crohn's disease

21 June 2018

1 reference

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Unstable composition of the fecal microbiota in ulcerative colitis during clinical remission

21 June 2018

1 reference

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Microbial influences in inflammatory bowel diseases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Probiotics affect virulence-related gene expression in Escherichia coli O157:H7

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

The fundamental basis of inflammatory bowel disease

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Microbial diversity of inflamed and noninflamed gut biopsy tissues in inflammatory bowel disease.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

An obesity-associated gut microbiome with increased capacity for energy harvest

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Temperature gradient gel electrophoresis of fecal 16S rRNA reveals active Escherichia coli in the microbiota of patients with ulcerative colitis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

The gut flora as a forgotten organ

21 June 2018

1 reference

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Family and twin studies in inflammatory bowel disease

21 June 2018

1 reference

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Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Bacterial DNA within granulomas of patients with Crohn's disease--detection by laser capture microdissection and PCR.

21 June 2018

1 reference

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High prevalence of adherent-invasive Escherichia coli associated with ileal mucosa in Crohn’s disease

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Therapeutic manipulation of the enteric microflora in inflammatory bowel diseases: antibiotics, probiotics, and prebiotics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Clinical epidemiology of inflammatory bowel disease: Incidence, prevalence, and environmental influences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Induction of experimental ulcerative colitis by Fusobacterium varium isolated from colonic mucosa of patients with ulcerative colitis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Developmental regulation of intestinal angiogenesis by indigenous microbes via Paneth cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Roseburia intestinalis sp. nov., a novel saccharolytic, butyrate-producing bacterium from human faeces

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Adherent invasive Escherichia coli strains from patients with Crohn's disease survive and replicate within macrophages without inducing host cell death

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

A frameshift mutation in NOD2 associated with susceptibility to Crohn's disease

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

The contribution of sulphate reducing bacteria and 5-aminosalicylic acid to faecal sulphide in patients with ulcerative colitis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Mucosal antibodies in inflammatory bowel disease are directed against intestinal bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Reactivity of infiltrating T lymphocytes with microbial antigens in Crohn's disease

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Sequential isolation of metabolites, RNA, DNA, and proteins from the same unique sample.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

The secret garden's gardeners. Research increasingly appreciates the crucial role of gut viruses for human health and disease

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Colonisation by Faecalibacterium prausnitzii and maintenance of clinical remission in patients with ulcerative colitis

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Medicines from microbiota

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Translating the human microbiome

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Increasing incidence of pediatric inflammatory bowel disease in Spain (1996-2009): the SPIRIT Registry

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Smokers with active Crohn's disease have a clinically relevant dysbiosis of the gastrointestinal microbiota.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Invasive potential of gut mucosa-derived Fusobacterium nucleatum positively correlates with IBD status of the host

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

A vegan or vegetarian diet substantially alters the human colonic faecal microbiota.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

The role of Candida in inflammatory bowel disease. Estimation of transmission of C. albicans fungi in gastrointestinal tract based on genetic affinity between strains

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Microarrays in the clinic

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

What are the consequences of the disappearing human microbiota?

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Crohn's disease-associated Nod2 mutants reduce IL10 transcription

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Low counts of Faecalibacterium prausnitzii in colitis microbiota.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Twin studies reveal specific imbalances in the mucosa-associated microbiota of patients with ileal Crohn's disease

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Lactobacillus casei downregulates commensals' inflammatory signals in Crohn's disease mucosa

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Early differences in fecal microbiota composition in children may predict overweight.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Adherent-invasive Escherichia coli isolated from Crohn's disease patients induce granulomas in vitro

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Commensal anaerobic gut bacteria attenuate inflammation by regulating nuclear-cytoplasmic shuttling of PPAR-gamma and RelA.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Mucosal flora in inflammatory bowel disease

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Butyrate and glucose metabolism by colonocytes in experimental colitis in mice

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

Host-Mediated Inflammation Disrupts the Intestinal Microbiota and Promotes the Overgrowth of Enterobacteriaceae

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4034132

The commensal microbiota and enteropathogens in the pathogenesis of inflammatory bowel diseases

30 October 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/24560869

12 December 2020

Antiinflammatory Effects of Enterically Coated Amoxicillin-Clavulanic Acid in Active Ulcerative Colitis

1 reference

https://pubmed.ncbi.nlm.nih.gov/24560869

12 December 2020

Dextran sodium sulfate-induced colitis in germ-free IQI/Jic mice

1 reference

https://pubmed.ncbi.nlm.nih.gov/24560869

12 December 2020

A complex microworld in the gut: Harnessing pathogen-commensal relations

1 reference

https://pubmed.ncbi.nlm.nih.gov/24560869

12 December 2020

Fusobacterium varium localized in the colonic mucosa of patients with ulcerative colitis stimulates species-specific antibody

1 reference

https://pubmed.ncbi.nlm.nih.gov/24560869

12 December 2020

10.1053/J.GASTRO.2014.02.009

Identifiers

DOI

1 reference

28 July 2017

1 reference

28 July 2017

1 reference