Memory in microbes: quantifying history-dependent behavior in a bacterium (Q33322890)

25 July 2017

title

Memory in microbes: quantifying history-dependent behavior in a bacterium (English)

1 reference

25 July 2017

Adam P Arkin

6

0 references

Jay Keasling

5

object named as

Jay Keasling

1 reference

25 July 2017

Denise M Wolf

1

1 reference

25 July 2017

Lisa Fontaine-Bodin

2

1 reference

25 July 2017

Ilka Bischofs

3

1 reference

25 July 2017

Gavin Price

4

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25 July 2017

language of work or name

English

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publication date

27 February 2008

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25 July 2017

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25 July 2017

volume

3

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25 July 2017

issue

2

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25 July 2017

page(s)

e1700

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Creative Commons CC0 License

25 July 2017

copyright license

start time

27 February 2008

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April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

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cites work

Rational design of memory in eukaryotic cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Mammalian synthetic biology: engineering of sophisticated gene networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Adaptive response of a gene network to environmental changes by fitness-induced attractor selection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Transcriptional dynamics of the embryonic stem cell switch

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Transcriptional profiling of the Bacillus anthracis life cycle in vitro and an implied model for regulation of spore formation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

21 June 2018

Bistability in bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

An excitable gene regulatory circuit induces transient cellular differentiation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Bifurcation and singularity analysis of a molecular network for the induction of long-term memory

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Enhancement of cellular memory by reducing stochastic transitions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Diversity in times of adversity: probabilistic strategies in microbial survival games

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

A master regulator for biofilm formation by Bacillus subtilis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

The Bacillus subtilis sin operon: an evolvable network motif

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Phenotypic consequences of 1,000 generations of selection at elevated CO2 in a green alga

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Switches, cross-talk and memory in Escherichia coli adherence.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Stochastic gene expression in fluctuating environments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Bacillus subtilis transcriptional regulators interaction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

How much information is associated with a particular stimulus?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

On the deduction of chemical reaction pathways from measurements of time series of concentrations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Motifs, modules and games in bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Hysteresis drives cell-cycle transitions in Xenopus laevis egg extracts

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Memory in bacteria and phage

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Self-perpetuating states in signal transduction: positive feedback, double-negative feedback and bistability

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Survival of enteric bacteria in seawater

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Network dynamics and cell physiology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Playing Dr Jekyll and Mr Hyde: combined mechanisms of phase variation in bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Bistability in the JNK cascade

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Autoamplification of a two-component regulatory system results in "learning" behavior

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Positive feedback in eukaryotic gene networks: cell differentiation by graded to binary response conversion

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

How to measure the information gained from one symbol

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Construction of a genetic toggle switch in Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Information theory and neural coding

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Mathematical model of the fission yeast cell cycle with checkpoint controls at the G1/S, G2/M and metaphase/anaphase transitions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Molecular genetics of sporulation in Bacillus subtilis.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Genetic networks controlling the initiation of sporulation and the development of genetic competence in Bacillus subtilis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Genetics of subtilin and nisin biosyntheses: biosynthesis of lantibiotics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

FACS-optimized mutants of the green fluorescent protein (GFP)

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

SpoIIE governs the phosphorylation state of a protein regulating transcription factor sigma F during sporulation in Bacillus subtilis.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Chemotaxis in Bacillus subtilis: how bacteria monitor environmental signals

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

A strategy of win-stay, lose-shift that outperforms tit-for-tat in the Prisoner's Dilemma game

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

The DegS/DegU and ComP/ComA two-component systems are part of a network controlling degradative enzyme synthesis and competence in Bacillus subtilis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Regulation of peptide antibiotic production in Bacillus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

The evolution of cooperation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Replacement of the Bacillus subtilis subtilisin structural gene with an In vitro-derived deletion mutation.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Extinction dynamics of age-structured populations in a fluctuating environment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Short-term and long-term memory in single cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

A response regulator model in a simple sensory system

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2264733

Growth history influences starvation-induced expression of uspA, grpE, and rpoS and subsequent cryotolerance in Escherichia coli O157:H7.

21 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0001700

Signalling network with a bistable hysteretic switch controls developmental activation of the sigma transcription factor in Bacillus subtilis.

21 January 2018

1 reference

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21 January 2018

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21 January 2018

1 reference

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Phosphatases modulate the bistable sporulation gene expression pattern in Bacillus subtilis.

21 January 2018

1 reference

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21 January 2018

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21 January 2018

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31 October 2018

1 reference

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1 reference

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21 January 2018

1 reference

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When the going gets tough: survival strategies and environmental signaling networks in Bacillus subtilis

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1 reference

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Control of development by altered localization of a transcription factor in B. subtilis

1 reference

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Bacterial observations: a rudimentary form of intelligence?

1 reference

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Construction of protein overproducer strains in Bacillus subtilis by an integrative approach

1 reference

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The effect of the growth environment on the lag phase of Listeria monocytogenes

1 reference

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Information transport in spatiotemporal systems

1 reference

https://pubmed.ncbi.nlm.nih.gov/18324309

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Multiple attractors in immunology: theory and experiment

1 reference

https://pubmed.ncbi.nlm.nih.gov/18324309

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DNA transport during transformation

1 reference

https://pubmed.ncbi.nlm.nih.gov/18324309

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Cell fates as high-dimensional attractor states of a complex gene regulatory network

1 reference

https://pubmed.ncbi.nlm.nih.gov/18324309

12 December 2020

10.1371/JOURNAL.PONE.0001700

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DOI

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25 July 2017

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25 July 2017

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