The structure of the protein universe and genome evolution (Q31118789)

29 June 2017

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title

The structure of the protein universe and genome evolution (English)

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29 June 2017

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1

Eugene V Koonin

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29 June 2017

2

Yuri I Wolf

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29 June 2017

3

Georgy P Karev

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29 June 2017

language of work or name

English

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publication date

1 November 2002

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29 June 2017

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29 June 2017

volume

420

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29 June 2017

issue

6912

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29 June 2017

page(s)

218-223

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Mapping the protein universe

29 June 2017

cites work

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Protein folds: molecular systematics in three dimensions.

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Did evolution leap to create the protein universe?

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Establishing homologies in protein sequences

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Structural classification of proteins: new superfamilies

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

CATH--a hierarchic classification of protein domain structures

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Evolution of function in protein superfamilies, from a structural perspective.

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

SCOP database in 2002: refinements accommodate structural genomics

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Comparative genomics and evolution of proteins involved in RNA metabolism

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains.

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

The P-loop--a common motif in ATP- and GTP-binding proteins

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

A superfamily of ATPases with diverse functions containing either classical or deviant ATP-binding motif

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Trends in protein evolution inferred from sequence and structure analysis.

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Analogous enzymes: independent inventions in enzyme evolution

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Protein folds and functions

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Distinguishing Homologous from Analogous Proteins

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Homology a personal view on some of the problems

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

A genomic perspective on protein families

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

The COG database: a tool for genome-scale analysis of protein functions and evolution

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Lineage-specific gene expansions in bacterial and archaeal genomes

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

The role of lineage-specific gene family expansion in the evolution of eukaryotes

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Gene families: the taxonomy of protein paralogs and chimeras

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Biological meaning, statistical significance, and classification of local spatial similarities in nonhomologous proteins

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Protein superfamilies and domain superfolds

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

The appearance of new structures and functions in proteins during evolution.

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

One thousand families for the molecular biologist

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Relations of the numbers of protein sequences, families and folds.

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

A re-estimation for the total numbers of protein folds and superfamilies

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Estimating the number of protein folds.

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Estimating the total number of protein folds

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Estimating the number of protein folds and families from complete genome data

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

A unifold, mesofold, and superfold model of protein fold use

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

The frequency distribution of gene family sizes in complete genomes.

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Protein family and fold occurrence in genomes: power-law behaviour and evolutionary model

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Studying genomes through the aeons: protein families, pseudogenes and proteome evolution

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

The dominance of the population by a selected few: power-law behaviour applies to a wide variety of genomic properties

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Emergence of Scaling in Random Networks

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Topological properties of citation and metabolic networks.

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Statistical mechanics of complex networks

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Scale invariance in biology: coincidence or footprint of a universal mechanism?

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

The large-scale organization of metabolic networks

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Hierarchical organization of modularity in metabolic networks

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Lethality and centrality in protein networks

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Emergence of Preferred Structures in a Simple Model of Protein Folding

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Are protein folds atypical?

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome.

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

A Mathematical Theory of Evolution, Based on the Conclusions of Dr. J. C. Willis, F.R.S

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

https://api.crossref.org/works/10.1038%2FNATURE01256

1 reference

7 January 2021

Phylogenetic classification and the universal tree

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes.

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Horizontal gene transfer in prokaryotes: quantification and classification

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Detection of lateral gene transfer among microbial genomes.

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Detecting protein function and protein-protein interactions from genome sequences

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Protein interaction maps for complete genomes based on gene fusion events

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Who's your neighbor? New computational approaches for functional genomics

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Guilt by association: contextual information in genome analysis

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

The impact of comparative genomics on our understanding of evolution

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Initial sequencing and analysis of the human genome

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Scale-free behavior in protein domain networks.

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

An insight into domain combinations

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Crystal structure of human 53BP1 BRCT domains bound to p53 tumour suppressor

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Completeness in structural genomics.

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

CDD: a database of conserved domain alignments with links to domain three-dimensional structure

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https://api.crossref.org/works/10.1038%2FNATURE01256

7 January 2021

Identifiers

DOI

10.1038/NATURE01256

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Dimensions Publication ID

29 June 2017

1046871020

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