Forward-time simulation of realistic samples for genome-wide association studies (Q30988891)

18 October 2017

Forward-time simulation of realistic samples for genome-wide association studies (English)

1 reference

genome-wide association study

18 October 2017

0 references

1

Bo Peng

1 reference

18 October 2017

2

Christopher I Amos

1 reference

18 October 2017

1 September 2010

1 reference

18 October 2017

1 reference

18 October 2017

11

1 reference

18 October 2017

442

1 reference

Creative Commons Attribution 2.0 Generic

18 October 2017

start time

1 September 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

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21 June 2018

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Detection of disease-associated deletions in case-control studies using SNP genotypes with application to rheumatoid arthritis

21 June 2018

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GLOSSI: a method to assess the association of genetic loci-sets with complex diseases

21 June 2018

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Detecting gene-environment interactions using a combined case-only and case-control approach

21 June 2018

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Fast and flexible simulation of DNA sequence data

21 June 2018

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Fregene: simulation of realistic sequence-level data in populations and ascertained samples

21 June 2018

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ForSim: a tool for exploring the genetic architecture of complex traits with controlled truth

21 June 2018

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GENOMEPOP: a program to simulate genomes in populations

21 June 2018

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Forward-time simulations of non-random mating populations using simuPOP.

21 June 2018

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Genome-wide association studies for complex traits: consensus, uncertainty and challenges

21 June 2018

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Genome-wide association scan of tag SNPs identifies a susceptibility locus for lung cancer at 15q25.1

21 June 2018

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Examining the statistical properties of fine-scale mapping in large-scale association studies

21 June 2018

1 reference

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Sequence-level population simulations over large genomic regions

21 June 2018

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Simulating association studies: a data-based resampling method for candidate regions or whole genome scans

21 June 2018

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Combining evidence of natural selection with association analysis increases power to detect malaria-resistance variants

21 June 2018

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A new multipoint method for genome-wide association studies by imputation of genotypes

21 June 2018

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Forward-time simulations of human populations with complex diseases

21 June 2018

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The Stepping Stone Model of Population Structure and the Decrease of Genetic Correlation with Distance

21 June 2018

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Simulations provide support for the common disease-common variant hypothesis

21 June 2018

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Principal components analysis corrects for stratification in genome-wide association studies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

Fast "coalescent" simulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

A map of recent positive selection in the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

A haplotype map of the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

CoaSim: a flexible environment for simulating genetic data under coalescent models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

A fine-scale map of recombination rates and hotspots across the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

Will admixture mapping work to find disease genes?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

simuPOP: a forward-time population genetics simulation environment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

Mapping by admixture linkage disequilibrium: advances, limitations and guidelines

21 June 2018

1 reference

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Joint modeling of linkage and association: identifying SNPs responsible for a linkage signal

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

In silico analysis of disease-association mapping strategies using the coalescent process and incorporating ascertainment and selection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

Estimation of individual admixture: analytical and study design considerations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

Admixture mapping for hypertension loci with genome-scan markers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

Towards sound epistemological foundations of statistical methods for high-dimensional biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

Haploview: analysis and visualization of LD and haplotype maps

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

SelSim: a program to simulate population genetic data with natural selection and recombination

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

A genealogical interpretation of linkage disequilibrium

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

Powerful regression-based quantitative-trait linkage analysis of general pedigrees

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

Case-control studies of association in structured or admixed populations.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

Generating samples under a Wright-Fisher neutral model of genetic variation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

Genomic control for association studies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

Population structure in admixed populations: effect of admixture dynamics on the pattern of linkage disequilibrium.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

When did the human population size start increasing?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

Association mapping in structured populations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

A coalescent approach to study linkage disequilibrium between single-nucleotide polymorphisms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

Genetic dissection of complex traits

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

Linkage disequilibrium in growing and stable populations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

Gm3;5,13,14 and type 2 diabetes mellitus: an association in American Indians with genetic admixture

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

The genetic structure of admixed populations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

Joint reanalysis of 29 correlated SNPs supports the role of PCLO/Piccolo as a causal risk factor for major depressive disorder

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

Consortium hopes to sequence genome of 1000 volunteers

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

GENOME: a rapid coalescent-based whole genome simulator

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

The structure of linkage disequilibrium around a selective sweep

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

Approximating the coalescent with recombination

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2939614

Simulating genealogies of selected alleles in a population of variable size

25 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/20809983

12 December 2020

GWAsimulator: a rapid whole-genome simulation program

1 reference

https://pubmed.ncbi.nlm.nih.gov/20809983

12 December 2020

Intermediate phenotypes in schizophrenia genetics redux: is it a no brainer?

1 reference

https://pubmed.ncbi.nlm.nih.gov/20809983

12 December 2020

ESTIMATING F-STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE.

1 reference

https://pubmed.ncbi.nlm.nih.gov/20809983

12 December 2020

Comparison of model-free linkage mapping strategies for the study of a complex trait

1 reference

https://pubmed.ncbi.nlm.nih.gov/20809983

12 December 2020

Identifiers

DOI

10.1186/1471-2105-11-442

1 reference

18 October 2017

journals/bmcbi/PengA10

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

PMC publication ID

2939614

18 October 2017

PubMed publication ID

20809983

1 reference

PMC publication ID

2939614