Handling realistic assumptions in hypothesis testing of 3D co-localization of genomic elements (Q30540090)

16 August 2017

Handling realistic assumptions in hypothesis testing of 3D co-localization of genomic elements (English)

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16 August 2017

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theoretical assumption

1 reference

Lars Holden

4

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Eivind Hovig

object named as

Eivind Hovig

7

0 references

Ingrid Kristine Glad

6

object named as

Ingrid K Glad

1 reference

16 August 2017

3

Geir Kjetil Sandve

1 reference

16 August 2017

Jonas Paulsen

1

1 reference

16 August 2017

Tonje G Lien

2

1 reference

16 August 2017

Ornulf Borgan

5

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16 August 2017

language of work or name

English

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publication date

9 April 2013

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16 August 2017

Nucleic Acids Research

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16 August 2017

41

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16 August 2017

10

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16 August 2017

5164-5174

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Creative Commons Attribution-NonCommercial 3.0 Unported

16 August 2017

start time

5 October 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

DNA replication timing and higher-order nuclear organization determine single-nucleotide substitution patterns in cancer genomes

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Memories from the polycomb group proteins.

14 July 2018

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Iterative correction of Hi-C data reveals hallmarks of chromosome organization

14 July 2018

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Topological domains in mammalian genomes identified by analysis of chromatin interactions

14 July 2018

1 reference

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On the assessment of statistical significance of three-dimensional colocalization of sets of genomic elements

14 July 2018

1 reference

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Three-dimensional folding and functional organization principles of the Drosophila genome

14 July 2018

1 reference

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Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation

14 July 2018

1 reference

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DNA replication timing and long-range DNA interactions predict mutational landscapes of cancer genomes

14 July 2018

1 reference

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High order chromatin architecture shapes the landscape of chromosomal alterations in cancer

14 July 2018

1 reference

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Nuclear colocalization of transcription factor target genes strengthens coregulation in yeast

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664813

Whole-genome sequencing identifies recurrent mutations in chronic lymphocytic leukaemia

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664813

Mapping and analysis of chromatin state dynamics in nine human cell types

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664813

The Genomic HyperBrowser: inferential genomics at the sequence level

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664813

Intra- and inter-chromosomal interactions correlate with CTCF binding genome wide.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664813

The NIH Roadmap Epigenomics Mapping Consortium

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664813

A three-dimensional model of the yeast genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664813

An oestrogen-receptor-α-bound human chromatin interactome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664813

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664813

Beyond the sequence: cellular organization of genome function

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664813

Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664813

Remote control of gene transcription

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664813

Long-range control of gene expression: emerging mechanisms and disruption in disease

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664813

The ENCODE (ENCyclopedia Of DNA Elements) Project

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664813

Cellular machineries for chromosomal DNA repair.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664813

Capturing chromosome conformation

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664813

Chromatin organization is a major influence on regional mutation rates in human cancer cells.

14 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKT227

Permutation P-values should never be zero: calculating exact P-values when permutations are randomly drawn

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3664813

26 November 2018

Identifiers

DOI

10.1093/NAR/GKT227

1 reference

16 August 2017

1 reference

16 August 2017

PubMed publication ID

23571755

1 reference