Multiscale models of angiogenesis (Q30432668)

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25 January 2020

review article

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title

Multiscale models of angiogenesis (English)

1 reference

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25 January 2020

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5

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25 January 2020

Emmanouil D. Karagiannis

series ordinal

3

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25 January 2020

2

Feilim Mac Gabhann

1 reference

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25 January 2020

Amina A Qutub

1

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author name string

Prakash Vempati

series ordinal

4

1 reference

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25 January 2020

publication date

1 March 2009

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IEEE Engineering in Medicine and Biology Magazine

25 January 2020

published in

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25 January 2020

volume

28

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25 January 2020

issue

2

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25 January 2020

page(s)

14-31

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A compartment model of VEGF distribution in blood, healthy and diseased tissues.

25 January 2020

cites work

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Reactive oxygen species regulate hypoxia-inducible factor 1alpha differentially in cancer and ischemia

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Crosstalk between vascular endothelial growth factor, notch, and transforming growth factor-beta in vascular morphogenesis

20 June 2018

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20 June 2018

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20 June 2018

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Where is VEGF in the body? A meta-analysis of VEGF distribution in cancer.

20 June 2018

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20 June 2018

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A biochemical model of matrix metalloproteinase 9 activation and inhibition

20 June 2018

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20 June 2018

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Growth factors for therapeutic angiogenesis in peripheral arterial disease

20 June 2018

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Three autocrine feedback loops determine HIF1 alpha expression in chronic hypoxia.

20 June 2018

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Sequential logic model deciphers dynamic transcriptional control of gene expressions

20 June 2018

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A computational model of oxygen delivery by hemoglobin-based oxygen carriers in three-dimensional microvascular networks.

20 June 2018

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A data integration approach for cell cycle analysis oriented to model simulation in systems biology

20 June 2018

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Predictive oncology: a review of multidisciplinary, multiscale in silico modeling linking phenotype, morphology and growth

20 June 2018

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Hypoxic regulation of glucose transport, anaerobic metabolism and angiogenesis in cancer: novel pathways and targets for anticancer therapeutics

20 June 2018

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The biochemical, biological, and pathological kaleidoscope of cell surface substrates processed by matrix metalloproteinases.

20 June 2018

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Integrative database management for mouse development: systems and concepts

20 June 2018

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Molecular regulation of angiogenesis and lymphangiogenesis

20 June 2018

1 reference

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Neuropilins in physiological and pathological angiogenesis

20 June 2018

1 reference

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Dimerization of VEGF receptors and implications for signal transduction: a computational study

20 June 2018

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Multi-cell agent-based simulation of the microvasculature to study the dynamics of circulating inflammatory cell trafficking.

20 June 2018

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Structural basis for ligand and heparin binding to neuropilin B domains

20 June 2018

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Evidence-based modeling of critical illness: an initial consensus from the Society for Complexity in Acute Illness

20 June 2018

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Vascular endothelial growth factors: biology and current status of clinical applications in cardiovascular medicine

20 June 2018

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Vascular endothelial growth factor (VEGF) signaling in tumor progression

20 June 2018

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Delta-like ligand 4 (Dll4) is induced by VEGF as a negative regulator of angiogenic sprouting

20 June 2018

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A cell-based model exhibiting branching and anastomosis during tumor-induced angiogenesis

20 June 2018

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Dll4 signalling through Notch1 regulates formation of tip cells during angiogenesis

20 June 2018

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Both ligand- and cell-specific parameters control ligand agonism in a kinetic model of g protein-coupled receptor signaling

20 June 2018

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Targeting neuropilin-1 to inhibit VEGF signaling in cancer: Comparison of therapeutic approaches

20 June 2018

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Blockade of Dll4 inhibits tumour growth by promoting non-productive angiogenesis

20 June 2018

1 reference

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Bringing metabolic networks to life: integration of kinetic, metabolic, and proteomic data

20 June 2018

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Dual role of hydrogen peroxide in cancer: possible relevance to cancer chemoprevention and therapy

20 June 2018

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Vascular endothelial growth factor receptor-1 (VEGFR-1/Flt-1): a dual regulator for angiogenesis

20 June 2018

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Multiple factors affecting cellular redox status and energy metabolism modulate hypoxia-inducible factor prolyl hydroxylase activity in vivo and in vitro

20 June 2018

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Harnessing the hypoxia-inducible factor in cancer and ischemic disease

20 June 2018

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Redox regulation of the hypoxia-inducible factor

20 June 2018

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Alternative splicing in angiogenesis: the vascular endothelial growth factor paradigm

20 June 2018

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Computational model of vascular endothelial growth factor spatial distribution in muscle and pro-angiogenic cell therapy

20 June 2018

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Molecular and functional diversity of vascular endothelial growth factors

20 June 2018

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A computational model of intracellular oxygen sensing by hypoxia-inducible factor HIF1 alpha

20 June 2018

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Oxygen sensing by mitochondria at complex III: the paradox of increased reactive oxygen species during hypoxia.

20 June 2018

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Modelling biological complexity: a physical scientist's perspective

20 June 2018

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Increased prolyl 4-hydroxylase domain proteins compensate for decreased oxygen levels. Evidence for an autoregulatory oxygen-sensing system

20 June 2018

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Oxygen-sensitive reset of hypoxia-inducible factor transactivation response: prolyl hydroxylases tune the biological normoxic set point

20 June 2018

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HIFing the brakes: therapeutic opportunities for treatment of human malignancies

20 June 2018

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From homogeneous to fractal normal and tumorous microvascular networks in the brain

20 June 2018

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Cellular imaging in drug discovery

20 June 2018

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Development of novel therapeutic strategies that target HIF-1.

20 June 2018

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Cell-signalling dynamics in time and space

20 June 2018

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Effects of geldanamycin on HIF-1alpha mediated angiogenesis and invasion in prostate cancer cells

20 June 2018

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Pathguide: a pathway resource list

20 June 2018

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Minimum information requested in the annotation of biochemical models (MIRIAM)

20 June 2018

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Mitochondrial tumour suppressors: a genetic and biochemical update

20 June 2018

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Cell elongation is key to in silico replication of in vitro vasculogenesis and subsequent remodeling

20 June 2018

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Nitric oxide inhibits HIF-1alpha protein accumulation under hypoxic conditions: implication of 2-oxoglutarate and iron

20 June 2018

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A hypoxia-driven vascular endothelial growth factor/Flt1 autocrine loop interacts with hypoxia-inducible factor-1alpha through mitogen-activated protein kinase/extracellular signal-regulated kinase 1/2 pathway in neuroblastoma

20 June 2018

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Multiscale modeling of cardiac cellular energetics

20 June 2018

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Distinct modes of collagen type I proteolysis by matrix metalloproteinase (MMP) 2 and membrane type I MMP during the migration of a tip endothelial cell: insights from a computational model.

20 June 2018

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Processing of VEGF-A by matrix metalloproteinases regulates bioavailability and vascular patterning in tumors

20 June 2018

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Intracellular signaling: spatial and temporal control

20 June 2018

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Cell-autonomous notch signaling regulates endothelial cell branching and proliferation during vascular tubulogenesis.

20 June 2018

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Pathway information for systems biology

20 June 2018

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Space in systems biology of signaling pathways--towards intracellular molecular crowding in silico

20 June 2018

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Hypoxic preconditioning protects against ischemic brain injury

20 June 2018

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Differential binding of VEGF isoforms to VEGF receptor 2 in the presence of neuropilin-1: a computational model

20 June 2018

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Quantitative evaluation and modeling of two-dimensional neovascular network complexity: the surface fractal dimension

20 June 2018

1 reference

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MT1-MMP-dependent neovessel formation within the confines of the three-dimensional extracellular matrix.

20 June 2018

1 reference

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Haploinsufficiency of delta-like 4 ligand results in embryonic lethality due to major defects in arterial and vascular development.

20 June 2018

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Haploinsufficient lethality and formation of arteriovenous malformations in Notch pathway mutants

20 June 2018

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Dosage-sensitive requirement for mouse Dll4 in artery development

20 June 2018

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Hydroxylation of HIF-1: oxygen sensing at the molecular level

20 June 2018

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Endothelial PAS domain protein 1 gene promotes angiogenesis through the transactivation of both vascular endothelial growth factor and its receptor, Flt-1.

20 June 2018

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Properties of switch-like bioregulatory networks studied by simulation of the hypoxia response control system

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Mathematical modelling of tumour-induced angiogenesis: network growth and structure.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Regulation of angiogenesis by extracellular matrix

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Multicellular simulation predicts microvascular patterning and in silico tissue assembly

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Therapeutic angiogenesis in cardiovascular disease

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Hypoxia up-regulates prolyl hydroxylase activity: a feedback mechanism that limits HIF-1 responses during reoxygenation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Review of the BRENDA Database.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Role of PlGF in the intra- and intermolecular cross talk between the VEGF receptors Flt1 and Flk1

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Matrix metalloproteinases and tissue inhibitors of metalloproteinases: structure, function, and biochemistry

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Integration from proteins to organs: the Physiome Project

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Biochemistry and molecular biology of gelatinase B or matrix metalloproteinase-9 (MMP-9)

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Angiogenesis assays: a critical overview

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Functional genomics and the comparative physiology of hypoxia

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

MMPs and TIMPs--an historical perspective

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Untangling the wires: a strategy to trace functional interactions in signaling and gene networks

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Matrix metalloproteinases: a tail of a frog that became a prince

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

VEGF165 mediates formation of complexes containing VEGFR-2 and neuropilin-1 that enhance VEGF165-receptor binding

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Selective induction of neuropilin-1 by vascular endothelial growth factor (VEGF): a mechanism contributing to VEGF-induced angiogenesis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Signaling properties of VEGF receptor-1 and -2 homo- and heterodimers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Involvement of Flt-1 tyrosine kinase (vascular endothelial growth factor receptor-1) in pathological angiogenesis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

HIF-1: using two hands to flip the angiogenic switch

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Matrix metalloproteinase activity is required for activity-induced angiogenesis in rat skeletal muscle

20 June 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

20 June 2018

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Regulation of cell invasion and morphogenesis in a three-dimensional type I collagen matrix by membrane-type matrix metalloproteinases 1, 2, and 3.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Proteolysis and cell migration: creating a path?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Flt-1 lacking the tyrosine kinase domain is sufficient for normal development and angiogenesis in mice

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

The TIMP2 membrane type 1 metalloproteinase "receptor" regulates the concentration and efficient activation of progelatinase A. A kinetic study

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

The mathematical modelling of tumour angiogenesis and invasion.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

The carboxyl-terminal domain (111-165) of vascular endothelial growth factor is critical for its mitogenic potency

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

The degradation of human endothelial cell-derived perlecan and release of bound basic fibroblast growth factor by stromelysin, collagenase, plasmin, and heparanases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

The vascular endothelial growth factor (VEGF) isoforms: differential deposition into the subepithelial extracellular matrix and bioactivity of extracellular matrix-bound VEGF.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

VEGF121, a vascular endothelial growth factor (VEGF) isoform lacking heparin binding ability, requires cell-surface heparan sulfates for efficient binding to the VEGF receptors of human melanoma cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Hypoxia-inducible factor 1 is a basic-helix-loop-helix-PAS heterodimer regulated by cellular O2 tension

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

A mathematical model of tumour-induced capillary growth.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Migration of individual microvessel endothelial cells: stochastic model and parameter measurement.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Analysis of the roles of microvessel endothelial cell random motility and chemotaxis in angiogenesis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Dual regulation of vascular endothelial growth factor bioavailability by genetic and proteolytic mechanisms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Model for initial vascular patterns in melanoma transplants

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Integration of angiogenesis modules at multiple scales: from molecular to tissue

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Skeletal muscle VEGF gradients in peripheral arterial disease: simulations of rest and exercise.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Strategies to enhance capillary formation inside biomaterials: a computational study.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Multi-scale computational models of pro-angiogenic treatments in peripheral arterial disease

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Simulations of chemotaxis and random motility in 2D random porous domains.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

A framework for three-dimensional simulation of morphogenesis.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

VEGF gradients, receptor activation, and sprout guidance in resting and exercising skeletal muscle.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Interactions of VEGF isoforms with VEGFR-1, VEGFR-2, and neuropilin in vivo: a computational model of human skeletal muscle.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Hypoxic preconditioning produces differential expression of hypoxia-inducible factor-1alpha (HIF-1alpha) and its regulatory enzyme HIF prolyl hydroxylase 2 in neonatal rat brain

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Matrilysin (MMP-7) degrades VE-cadherin and accelerates accumulation of beta-catenin in the nucleus of human umbilical vein endothelial cells.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

A computational model of oxygen transport in skeletal muscle for sprouting and splitting modes of angiogenesis.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Monte Carlo simulations of VEGF binding to cell surface receptors in vitro.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

A deterministic model of growth factor-induced angiogenesis

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Nonlinear simulation of tumor necrosis, neo-vascularization and tissue invasion via an adaptive finite-element/level-set method

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Quantitative information management for the biochemical computation of cellular networks.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

A theoretical model of type I collagen proteolysis by matrix metalloproteinase (MMP) 2 and membrane type 1 MMP in the presence of tissue inhibitor of metalloproteinase 2.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

A reaction-diffusion model of basic fibroblast growth factor interactions with cell surface receptors

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

The Karyote® Physico-Chemical Genomic, Proteomic, Metabolic Cell Modeling System

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Estradiol increases extracellular levels of vascular endothelial growth factor in vivo in murine mammary cancer

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Ligand-induced vascular endothelial growth factor receptor-3 (VEGFR-3) heterodimerization with VEGFR-2 in primary lymphatic endothelial cells regulates tyrosine phosphorylation sites

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Exercise but not prostanoids enhance levels of vascular endothelial growth factor and other proliferative agents in human skeletal muscle interstitium

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Model of competitive binding of vascular endothelial growth factor and placental growth factor to VEGF receptors on endothelial cells

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

A Mathematical Model for the Role of Cell Signal Transduction in the Initiation and Inhibition of Angiogenesis

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

An alternative processing of integrin alpha(v) subunit in tumor cells by membrane type-1 matrix metalloproteinase

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Mathematical modeling of capillary formation and development in tumor angiogenesis: penetration into the stroma.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Membrane type 1-matrix metalloproteinase is activated during migration of human endothelial cells and modulates endothelial motility and matrix remodeling

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Synergism between vascular endothelial growth factor and placental growth factor contributes to angiogenesis and plasma extravasation in pathological conditions.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Tumor cell invasion of model 3-dimensional matrices: demonstration of migratory pathways, collagen disruption, and intercellular cooperation.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Numerical simulations of angiogenesis in the cornea.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Continuous and discrete mathematical models of tumor-induced angiogenesis.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

A mathematical model for the capillary endothelial cell-extracellular matrix interactions in wound-healing angiogenesis.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Mathematical modelling, simulation and prediction of tumour-induced angiogenesis.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

Mathematical models for tumour angiogenesis: numerical simulations and nonlinear wave solutions.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3077679

The Delta paradox: DLL4 blockade leads to more tumour vessels but less tumour growth

26 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/19349248

12 December 2020

The binding of vascular endothelial growth factor to its receptors is dependent on cell surface-associated heparin-like molecules

1 reference

https://pubmed.ncbi.nlm.nih.gov/19349248

12 December 2020

Agent-based simulation of notch-mediated tip cell selection in angiogenic sprout initialisation

1 reference

https://pubmed.ncbi.nlm.nih.gov/19349248

12 December 2020

The propeptide domain of membrane type 1 matrix metalloproteinase is required for binding of tissue inhibitor of metalloproteinases and for activation of pro-gelatinase A

1 reference

https://pubmed.ncbi.nlm.nih.gov/19349248

12 December 2020

MT1-MMP, but not secreted MMPs, influences the migration of human microvascular endothelial cells in 3-dimensional collagen gels

1 reference

https://pubmed.ncbi.nlm.nih.gov/19349248

12 December 2020

The virtual cell: an integrated modeling environment for experimental and computational cell biology

1 reference

https://pubmed.ncbi.nlm.nih.gov/19349248

12 December 2020

Flaxseed inhibits metastasis and decreases extracellular vascular endothelial growth factor in human breast cancer xenografts

1 reference

https://pubmed.ncbi.nlm.nih.gov/19349248

12 December 2020

Hypoxia-inducible factor 1 levels vary exponentially over a physiologically relevant range of O2 tension

1 reference

https://pubmed.ncbi.nlm.nih.gov/19349248

12 December 2020

Computational modeling of physiological systems

1 reference

https://pubmed.ncbi.nlm.nih.gov/19349248

12 December 2020

Mathematical modeling of tumor-induced angiogenesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19349248

12 December 2020

Matrix metalloproteinases and angiogenesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19349248

12 December 2020

Biochemistry by numbers: simulation of biochemical pathways with Gepasi 3

1 reference

https://pubmed.ncbi.nlm.nih.gov/19349248

12 December 2020

Identifiers

DOI

10.1109/MEMB.2009.931791

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19349248%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19349248%20AND%20SRC:MED&resulttype=core&format=json

25 January 2020

PubMed publication ID

19349248

1 reference