Context similarity scoring improves protein sequence alignments in the midnight zone. (Q30368028)

21 June 2017

title

Context similarity scoring improves protein sequence alignments in the midnight zone. (English)

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21 June 2017

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2

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21 June 2017

Armin Meier

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21 June 2017

language of work or name

English

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publication date

22 October 2014

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21 June 2017

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21 June 2017

volume

31

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21 June 2017

issue

5

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21 June 2017

page(s)

674-681

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Discriminative modelling of context-specific amino acid substitution probabilities

21 June 2017

cites work

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21 January 2018

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Protein secondary structure prediction based on position-specific scoring matrices

21 January 2018

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Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 January 2018

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Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry

21 January 2018

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Evaluation of local structure alphabets based on residue burial.

21 January 2018

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Combining local-structure, fold-recognition, and new fold methods for protein structure prediction.

21 January 2018

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21 January 2018

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21 January 2018

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A conditional neural fields model for protein threading

21 January 2018

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Protein threading using context-specific alignment potential

21 January 2018

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Detection of distant evolutionary relationships between protein families using theory of sequence profile-profile comparison.

21 January 2018

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Improved alignment quality by combining evolutionary information, predicted secondary structure and self-organizing maps.

21 January 2018

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Comparative protein modelling by satisfaction of spatial restraints

21 January 2018

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Protein homology detection by HMM-HMM comparison

21 January 2018

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High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABER-TOOTH.

21 January 2018

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MUSTER: Improving protein sequence profile-profile alignments by using multiple sources of structure information

21 January 2018

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A comparative assessment and analysis of 20 representative sequence alignment methods for protein structure prediction.

21 January 2018

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Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates

21 January 2018

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TM-align: a protein structure alignment algorithm based on the TM-score

21 January 2018

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Fold recognition by concurrent use of solvent accessibility and residue depth

21 January 2018

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10.1093/BIOINFORMATICS/BTU697

21 January 2018

Identifiers

DOI

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journals/bioinformatics/MeierS15

21 June 2017

DBLP publication ID

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DBLP Dataset 2021-01-02

28 January 2021

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