The role of phylogenetics in comparative genetics (Q28770095)

Phylogeny of Capparaceae and Brassicaceae based on chloroplast sequence data

Europe PubMed Central

title

The role of phylogenetics in comparative genetics (English)

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Pamela S Soltis

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Douglas E. Soltis

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1

object named as

Douglas E Soltis

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language of work or name

English

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publication date

August 2003

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published in

Plant Physiology

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volume

132

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issue

4

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page(s)

1790-800

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cites work

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The rest of the iceberg. Legume diversity and evolution in a phylogenetic context

16 March 2017

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A comparative genetic linkage map of eggplant (Solanum melongena) and its implications for genome evolution in the solanaceae

16 March 2017

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Phylogenetics of asterids based on 3 coding and 3 non-coding chloroplast DNA markers and the utility of non-coding DNA at higher taxonomic levels

16 March 2017

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Orthologs and paralogs - we need to get it right

16 March 2017

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An apology for orthologs - or brave new memes

16 March 2017

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Disintegration of the scrophulariaceae

16 March 2017

1 reference

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Vegetative and reproductive innovations of early land plants: implications for a unified phylogeny

16 March 2017

1 reference

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Phylogeny of seed plants based on all three genomic compartments: extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=526274

Seed plant phylogeny inferred from all three plant genomes: monophyly of extant gymnosperms and origin of Gnetales from conifers

16 March 2017

1 reference

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Divergence time and evolutionary rate estimation with multilocus data

16 March 2017

1 reference

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Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach

7 April 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=526274

7 April 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=526274

Bayesian inference of phylogeny and its impact on evolutionary biology

26 November 2018

1 reference

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Gaps as characters in sequence-based phylogenetic analyses

7 April 2017

1 reference

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The closest living relatives of land plants

7 April 2017

1 reference

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The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=526274

Phylogenetic test of the molecular clock and linearized trees

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=526274

Sources of error and confidence intervals in estimating the age of angiosperms from rbcL and 18S rDNA data.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=526274

Conservation of gene repertoire but not gene order in pepper and tomato

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=526274

Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=526274

Potential applications and pitfalls of Bayesian inference of phylogeny

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=526274

Beyond the Arabidopsis genome: opportunities for comparative genomics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=526274

The root of the angiosperms revisited

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=526274

Rate heterogeneity among lineages of tracheophytes: integration of molecular and fossil data and evidence for molecular living fossils

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=526274

Plant evolutionary genomics

3 June 2018

1 reference

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Plant systematics in the age of genomics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=526274

Horsetails and ferns are a monophyletic group and the closest living relatives to seed plants.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=526274

The ABCs of floral evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=526274

Contributions of plant molecular systematics to studies of molecular evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=526274

Evolution of genes and taxa: a primer

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=526274

Seed plant phylogeny: Demise of the anthophyte hypothesis?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=526274

The diversification of plant cytosolic small heat shock proteins preceded the divergence of mosses

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=526274

Structure and evolution of the actin gene family in Arabidopsis thaliana

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=526274

Parallel evolution of glucosinolate biosynthesis inferred from congruent nuclear and plastid gene phylogenies

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=526274

Phylogenetic dating with confidence intervals using mean path lengths

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=526274

A novel MADS-box gene subfamily with a sister-group relationship to class B floral homeotic genes.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=526274

MADS-Box gene diversity in seed plants 300 million years ago.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=526274

Divergence of the phytochrome gene family predates angiosperm evolution and suggests that Selaginella and Equisetum arose prior to Psilotum

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=526274

Molecular systematics of the Brassicaceae: evidence from coding plastidic matK and nuclear Chs sequences

26 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/12913137

12 December 2020

Evolutionary History of the Grasses

1 reference

https://pubmed.ncbi.nlm.nih.gov/12913137

12 December 2020

Deciding among green plants for whole genome studies

1 reference

https://pubmed.ncbi.nlm.nih.gov/12913137

12 December 2020

Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms

1 reference

https://pubmed.ncbi.nlm.nih.gov/12913137

12 December 2020

A green chapter in the book of life

1 reference

https://pubmed.ncbi.nlm.nih.gov/12913137

12 December 2020

The origin and early evolution of plants on land

1 reference

COCI

https://opencitations.net/index/coci/api/v1/citations/10.1038/37918