Improving ancient DNA read mapping against modern reference genomes (Q28727226)

8

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Aurelien Ginolhac

2

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Anders Krogh

7

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Stinus Lindgreen

Stinus Lindgreen

3

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Mikkel Schubert

Mikkel Schubert

1

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John F Thompson

John F Thompson

4

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Khaled A S Al-Rasheid

5

Improving the performance of true single molecule sequencing for ancient DNA

Khaled A S Al-Rasheid

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language of work or name

English

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publication date

10 May 2012

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published in

BMC Genomics

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volume

13

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issue

1

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page(s)

178

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cites work

1 reference

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Species-specific responses of Late Quaternary megafauna to climate and humans

17 March 2017

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A draft genome of Yersinia pestis from victims of the Black Death

17 March 2017

1 reference

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An Aboriginal Australian genome reveals separate human dispersals into Asia

17 March 2017

1 reference

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Targeted enrichment of ancient pathogens yielding the pPCP1 plasmid of Yersinia pestis from victims of the Black Death

17 March 2017

1 reference

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True single-molecule DNA sequencing of a pleistocene horse bone

17 March 2017

1 reference

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Genetic history of an archaic hominin group from Denisova Cave in Siberia

17 March 2017

1 reference

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Single molecule sequencing with a HeliScope genetic analysis system

17 March 2017

1 reference

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A Draft Sequence of the Neandertal Genome

17 March 2017

1 reference

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Computational challenges in the analysis of ancient DNA

17 March 2017

1 reference

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The complete mitochondrial DNA genome of an unknown hominin from southern Siberia

17 March 2017

1 reference

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Ancient human genome sequence of an extinct Palaeo-Eskimo

17 March 2017

1 reference

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Genome sequence, comparative analysis, and population genetics of the domestic horse

17 March 2017

1 reference

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The Neandertal genome and ancient DNA authenticity

17 March 2017

1 reference

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Fast and accurate short read alignment with Burrows-Wheeler transform

17 March 2017

1 reference

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Expression profiling of microRNAs by deep sequencing

17 March 2017

1 reference

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Sequencing the nuclear genome of the extinct woolly mammoth

17 March 2017

1 reference

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Novel high-resolution characterization of ancient DNA reveals C > U-type base modification events as the sole cause of post mortem miscoding lesions

17 March 2017

1 reference

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Patterns of damage in genomic DNA sequences from a Neandertal

17 March 2017

1 reference

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Ancient biomolecules from deep ice cores reveal a forested southern Greenland

17 March 2017

1 reference

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Analysis of one million base pairs of Neanderthal DNA

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3468387

Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3468387

Targeted retrieval and analysis of five Neandertal mtDNA genomes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3468387

Assessing ancient DNA studies

7 April 2017

1 reference

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mapDamage: testing for damage patterns in ancient DNA sequences

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3468387

Multiplexed DNA sequence capture of mitochondrial genomes using PCR products

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3468387

Single-molecule sequencing: sequence methods to enable accurate quantitation.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3468387

Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA.

3 June 2018

1 reference

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Virtual terminator nucleotides for next-generation DNA sequencing.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3468387

Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3468387

Pathogenicity and immunogenicity of influenza viruses with genes from the 1918 pandemic virus.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3468387

Long-term persistence of bacterial DNA.

3 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2164-13-178

Withering away--25,000 years of genetic decline preceded cave bear extinction

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2164-13-178

Paleo-Eskimo mtDNA genome reveals matrilineal discontinuity in Greenland

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2164-13-178

21 January 2018

Identifiers

DOI

10.1186/1471-2164-13-178

1 reference

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-13-178

1 reference

1 reference

PubMed publication ID

22574660

1 reference