Systematic deletion of Salmonella small RNA genes identifies CyaR, a conserved CRP-dependent riboregulator of OmpX synthesis (Q28275777)

6

0 references

Kai Papenfort

object named as

Kai Papenfort

1

0 references

Jay C. D. Hinton

5

object named as

Jay C D Hinton

0 references

Sacha Lucchini

3

object named as

Sacha Lucchini

0 references

author name string

Verena Pfeiffer

2

0 references

Avinash Sonawane

Staphylococcus aureus RNAIII coordinately represses the synthesis of virulence factors and the transcription regulator Rot by an antisense mechanism

4

0 references

language of work or name

English

0 references

publication date

May 2008

0 references

published in

Molecular Microbiology

0 references

volume

68

0 references

issue

4

0 references

page(s)

890-906

0 references

cites work

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

MicC, a second small-RNA regulator of Omp protein expression in Escherichia coli

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

MicF: an antisense RNA gene involved in response of Escherichia coli to global stress factors

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

Remodelling of the Escherichia coli outer membrane by two small regulatory RNAs

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

Hfq modulates the sigmaE-mediated envelope stress response and the sigma32-mediated cytoplasmic stress response in Escherichia coli

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

A survey of small RNA-encoding genes in Escherichia coli

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

Secondary structure prediction for aligned RNA sequences

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

Conserved small non-coding RNAs that belong to the sigmaE regulon: role in down-regulation of outer membrane proteins

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by Hfq

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

A unique mechanism regulating gene expression: translational inhibition by a complementary RNA transcript (micRNA)

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

Spot 42 RNA mediates discoordinate expression of the E. coli galactose operon

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

SigmaE-dependent small RNAs of Salmonella respond to membrane stress by accelerating global omp mRNA decay

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

Fast and effective prediction of microRNA/target duplexes

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

Conserved and variable functions of the sigmaE stress response in related genomes

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

The RNA chaperone Hfq is essential for the virulence of Salmonella typhimurium

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

pH-dependent expression of periplasmic proteins and amino acid catabolism in Escherichia coli

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

Target prediction for small, noncoding RNAs in bacteria

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

Sigma E controls biogenesis of the antisense RNA MicA

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA.

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

Translational control and target recognition by Escherichia coli small RNAs in vivo

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

Two seemingly homologous noncoding RNAs act hierarchically to activate glmS mRNA translation

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

A conserved small RNA promotes discoordinate expression of the glmUS operon mRNA to activate GlmS synthesis

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

Involvement of a novel transcriptional activator and small RNA in post-transcriptional regulation of the glucose phosphoenolpyruvate phosphotransferase system

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

Cyclic AMP (cAMP) and cAMP receptor protein influence both synthesis and uptake of extracellular autoinducer 2 in Escherichia coli

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

Identification of novel small RNAs using comparative genomics and microarrays

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

Global analysis of small RNA and mRNA targets of Hfq

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

Mfold web server for nucleic acid folding and hybridization prediction

21 April 2017

1 reference

https://api.crossref.org/works/10.1111/J.1365-2958.2008.06189.X

Molecular cloning and nucleotide sequencing of the gene for E. coli cAMP receptor protein

21 April 2017

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Cloning and promoter analysis of theEscherichia coliadenylate cyclase gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Gene duplication of the eight-stranded beta-barrel OmpX produces a functional pore: a scenario for the evolution of transmembrane beta-barrels

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Differential expression of over 60 chromosomal genes in Escherichia coli by constitutive expression of MarA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Sensitive detection of bacterial transcription initiation sites and differentiation from RNA processing sites in the pheromone-induced plasmid transfer system of Enterococcus faecalis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

A small RNA downregulates LamB maltoporin in Salmonella

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Non-canonical CRP sites control competence regulons in Escherichia coli and many other gamma-proteobacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Novel mechanism of Escherichia coli porin regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Carbon nutrition of Escherichia coli in the mouse intestine

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Cloning and sequence of the crp gene of Escherichia coli K 12.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

A role for the Escherichia coli H-NS-like protein StpA in OmpF porin expression through modulation of micF RNA stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Enterobacter aerogenes OmpX, a cation-selective channel mar- and osmo-regulated

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

An early response to environmental stress involves regulation of OmpX and OmpF, two enterobacterial outer membrane pore-forming proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Loss of Hfq activates the sigmaE-dependent envelope stress response in Salmonella enterica

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Studies of the distribution of Escherichia coli cAMP-receptor protein and RNA polymerase along the E. coli chromosome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Modulating the outer membrane with small RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Identification of regulatory network topological units coordinating the genome-wide transcriptional response to glucose in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Comparative genomic hybridization detects secondary chromosomal deletions in Escherichia coli K-12 MG1655 mutants and highlights instability in the flhDC region

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

A global role for Fis in the transcriptional control of metabolism and type III secretion in Salmonella enterica serovar Typhimurium.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Insertion sequence IS10 anti-sense pairing initiates by an interaction between the 5' end of the target RNA and a loop in the anti-sense RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

pH-Dependent Modulation of Cyclic AMP Levels and GadW-Dependent Repression of RpoS Affect Synthesis of the GadX Regulator andEscherichia coliAcid Resistance

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Identifying global regulators in transcriptional regulatory networks in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

The activity of sigma E, an Escherichia coli heat-inducible sigma-factor, is modulated by expression of outer membrane proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

New components of protein folding in extracytoplasmic compartments of Escherichia coli SurA, FkpA and Skp/OmpH.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Hfq: a bacterial Sm-like protein that mediates RNA-RNA interaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Inactivation of ompX causes increased interactions of type 1 fimbriated Escherichia coli with abiotic surfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Adhesion of type 1-fimbriated Escherichia coli to abiotic surfaces leads to altered composition of outer membrane proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

A small non-coding RNA of the invasion gene island (SPI-1) represses outer membrane protein synthesis from the Salmonella core genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

The sigmaE and Cpx regulatory pathways: overlapping but distinct envelope stress responses

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Identification of the sigmaE regulon of Salmonella enterica serovar Typhimurium

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Catabolite repression of the SirA regulatory cascade in Salmonella enterica.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

SigmaE regulates and is regulated by a small RNA in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

The bacterial Sm-like protein Hfq: a key player in RNA transactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

How to find small non-coding RNAs in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Small non-coding RNAs and the bacterial outer membrane

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Target identification of small noncoding RNAs in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

The small RNA IstR inhibits synthesis of an SOS-induced toxic peptide

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Molecular cloning and amplification of the adenylate cyclase gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Construction of versatile low-copy-number vectors for cloning, sequencing and gene expression in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2958.2008.06189.X

Space flight alters bacterial gene expression and virulence and reveals a role for global regulator Hfq.

21 January 2018

1 reference