IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies (Q28250973)

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7 June 2020

Heiko A Schmidt

series ordinal

2

1 reference

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Molecular Biology and Evolution

7 June 2020

language of work or name

English

0 references

publication date

January 2015

0 references

published in

1 reference

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7 June 2020

volume

32

1 reference

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7 June 2020

issue

1

1 reference

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7 June 2020

page(s)

268-274

1 reference

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Ultrafast approximation for phylogenetic bootstrap

7 June 2020

cites work

1 reference

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New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

20 March 2017

1 reference

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RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

20 March 2017

1 reference

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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

20 March 2017

1 reference

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A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

20 March 2017

1 reference

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Evolutionary trees from DNA sequences: A maximum likelihood approach

20 March 2017

1 reference

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Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

20 March 2017

1 reference

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BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data

7 April 2017

1 reference

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A new method for calculating evolutionary substitution rates

7 April 2017

1 reference

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The phylogenetic likelihood library.

7 April 2017

1 reference

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Characterizing the phylogenetic tree-search problem

29 September 2017

1 reference

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MetaPIGA v2.0: maximum likelihood large phylogeny estimation using the metapopulation genetic algorithm and other stochastic heuristics.

29 September 2017

1 reference

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A genetic algorithm for maximum-likelihood phylogeny inference using nucleotide sequence data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271533

The prevalence of multifurcations in tree-space and their implications for tree-search

29 September 2017

1 reference

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Improving the efficiency of SPR moves in phylogenetic tree search methods based on maximum likelihood

27 November 2018

1 reference

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pIQPNNI: parallel reconstruction of large maximum likelihood phylogenies.

27 November 2018

1 reference

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IQPNNI: moving fast through tree space and stopping in time.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271533

Accelerated Likelihood Surface Exploration: The Likelihood Ratchet

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271533

Stochastic search strategy for estimation of maximum likelihood phylogenetic trees.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271533

Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human influenza virus A.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4271533

Increasing the efficiency of searches for the maximum likelihood tree in a phylogenetic analysis of up to 150 nucleotide sequences

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25371430

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/MOLBEV/MSU300

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25371430%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

1 reference

2 references

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7 June 2020

PubMed publication ID

25371430

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25371430%20AND%20SRC:MED&resulttype=core&format=json