Transcriptional Activation of Inflammatory Genes: Mechanistic Insight into Selectivity and Diversity (Q27026790)

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7 June 2020

author name string

Afsar U Ahmed

series ordinal

1

1 reference

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7 June 2020

Gregory E Hannigan

series ordinal

3

1 reference

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7 June 2020

language of work or name

1 reference

11 November 2015

6 references

20 November 2019

11 December 2019

19 December 2019

22 December 2019

5 April 2021

7 references

20 November 2019

11 December 2019

19 December 2019

22 December 2019

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7 June 2020

5 April 2021

5

2 references

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7 June 2020

issue

4

2 references

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7 June 2020

page(s)

3087-3111

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Creative Commons Attribution

7 June 2020

copyright license

5 references

20 November 2019

11 December 2019

19 December 2019

22 December 2019

5 April 2021

0 references

Preparing the first responders: building the inflammatory transcriptome from the ground up

1 reference

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Chromatin targeting drugs in cancer and immunity

21 March 2017

1 reference

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Human mediator subunit MED26 functions as a docking site for transcription elongation factors

21 March 2017

1 reference

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A large fraction of extragenic RNA pol II transcription sites overlap enhancers

21 March 2017

1 reference

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Type I collagen promotes epithelial-mesenchymal transition through ILK-dependent activation of NF-kappaB and LEF-1

21 March 2017

1 reference

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Transcriptional competence and the active marking of tissue-specific enhancers by defined transcription factors in embryonic and induced pluripotent stem cells

21 March 2017

1 reference

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The phosphorylation status of nuclear NF-kappa B determines its association with CBP/p300 or HDAC-1

21 March 2017

1 reference

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IkappaB kinases phosphorylate NF-kappaB p65 subunit on serine 536 in the transactivation domain

21 March 2017

1 reference

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Rapid and phosphoinositol-dependent binding of the SWI/SNF-like BAF complex to chromatin after T lymphocyte receptor signaling

21 March 2017

1 reference

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Crystal structure of the nucleosome core particle at 2.8 A resolution

21 March 2017

1 reference

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An Atomic Model of the Interferon-β Enhanceosome

21 March 2017

1 reference

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The role of pattern-recognition receptors in innate immunity: update on Toll-like receptors

21 March 2017

1 reference

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High-resolution profiling of histone methylations in the human genome

21 March 2017

1 reference

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Pathogen recognition and innate immunity

21 March 2017

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NF-kappa B and Rel proteins: evolutionarily conserved mediators of immune responses

21 March 2017

2 references

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21 March 2017

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Mitogen-activated protein kinases in innate immunity

7 April 2017

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Tetrahymena histone acetyltransferase A: a homolog to yeast Gcn5p linking histone acetylation to gene activation

21 March 2017

1 reference

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Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex

21 March 2017

1 reference

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The histone H3 lysine-27 demethylase Jmjd3 links inflammation to inhibition of polycomb-mediated gene silencing

21 March 2017

1 reference

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Acetylation of RelA at discrete sites regulates distinct nuclear functions of NF-kappaB.

21 March 2017

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Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

21 March 2017

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Post-activation turn-off of NF-kappa B-dependent transcription is regulated by acetylation of p65

21 March 2017

1 reference

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ChIP-seq accurately predicts tissue-specific activity of enhancers

21 March 2017

1 reference

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The chromatin structure of specific genes: I. Evidence for higher order domains of defined DNA sequence

21 March 2017

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Integrin CD11b negatively regulates TLR-triggered inflammatory responses by activating Syk and promoting degradation of MyD88 and TRIF via Cbl-b

21 March 2017

1 reference

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Phosphoinositide-mediated adaptor recruitment controls Toll-like receptor signaling

21 March 2017

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Phosphorylation of NF-kappa B p65 by PKA stimulates transcriptional activity by promoting a novel bivalent interaction with the coactivator CBP/p300

21 March 2017

1 reference

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Missing pieces in the NF-kappaB puzzle

21 March 2017

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Activation and regulation of the inflammasomes

7 April 2017

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The biology of chromatin remodeling complexes

7 April 2017

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Regulation and function of NF-kappaB transcription factors in the immune system

7 April 2017

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Virus induction of human IFN beta gene expression requires the assembly of an enhanceosome

7 April 2017

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Facilitated binding of TATA-binding protein to nucleosomal DNA

7 April 2017

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Nucleosome disruption and enhancement of activator binding by a human SW1/SNF complex

7 April 2017

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Inducibility of kappa immunoglobulin enhancer-binding protein Nf-kappa B by a posttranslational mechanism

7 April 2017

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New strategies to address the pharmacodynamics and pharmacokinetics of tumor necrosis factor (TNF) inhibitors: A systematic analysis

7 April 2017

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Inhibition of integrin-linked kinase expression by emodin through crosstalk of AMPKα and ERK1/2 signaling and reciprocal interplay of Sp1 and c-Jun

28 September 2017

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BTB-ZF transcriptional regulator PLZF modifies chromatin to restrain inflammatory signaling programs.

28 September 2017

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Integrin-linked kinase modulates lipopolysaccharide- and Helicobacter pylori-induced nuclear factor κB-activated tumor necrosis factor-α production via regulation of p65 serine 536 phosphorylation

28 September 2017

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IAP family of cell death and signaling regulators

28 September 2017

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Involvement of ILK/ERK1/2 and ILK/p38 pathways in mediating the enhanced osteoblast differentiation by micro/nanotopography

28 September 2017

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p53 and NF-κB coregulate proinflammatory gene responses in human macrophages

28 September 2017

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Ubiquitin in inflammation: the right linkage makes all the difference

28 September 2017

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Rev-Erbs repress macrophage gene expression by inhibiting enhancer-directed transcription.

28 September 2017

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Signaling pathways differentially affect RNA polymerase II initiation, pausing, and elongation rate in cells

28 September 2017

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Modification of enhancer chromatin: what, how, and why?

28 September 2017

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eRNAs are required for p53-dependent enhancer activity and gene transcription

28 September 2017

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Transcription elongation factors DSIF and NELF: promoter-proximal pausing and beyond

28 September 2017

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Site-specific phosphorylation of the p65 protein subunit mediates selective gene expression by differential NF-κB and RNA polymerase II promoter recruitment

28 September 2017

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The inhibitor of apoptosis (IAP) proteins are critical regulators of signaling pathways and targets for anti-cancer therapy.

28 September 2017

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Transcription factors: from enhancer binding to developmental control

28 September 2017

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Transcript dynamics of proinflammatory genes revealed by sequence analysis of subcellular RNA fractions

28 September 2017

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Dimer-specific regulatory mechanisms within the NF-κB family of transcription factors

28 September 2017

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The noncanonical NF-κB pathway

28 September 2017

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Cellular inhibitors of apoptosis are global regulators of NF-κB and MAPK activation by members of the TNF family of receptors

28 September 2017

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Signaling in innate immunity and inflammation

28 September 2017

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28 September 2017

IAPs: guardians of RIPK1

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Hierarchies of NF-κB target-gene regulation

28 September 2017

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The Toll-like receptor gene family is integrated into human DNA damage and p53 networks.

28 September 2017

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Integrin-linked kinase regulates melanoma angiogenesis by activating NF-κB/interleukin-6 signaling pathway.

28 September 2017

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Epigenetic mechanisms in inflammation

28 September 2017

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Regulators of TLR4 signaling by endotoxins.

28 September 2017

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p53 Research: the past thirty years and the next thirty years.

28 September 2017

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Indirect inhibition of Toll-like receptor and type I interferon responses by ITAM-coupled receptors and integrins.

28 September 2017

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Selective transcription in response to an inflammatory stimulus

28 September 2017

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Inflammation 2010: new adventures of an old flame

28 September 2017

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Specification of DNA binding activity of NF-kappaB proteins

28 September 2017

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The NF-kappaB family of transcription factors and its regulation

28 September 2017

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Targeting the epigenome in the treatment of asthma and chronic obstructive pulmonary disease

28 September 2017

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DNA methylation of cancer genome.

28 September 2017

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Different modes of ubiquitination of the adaptor TRAF3 selectively activate the expression of type I interferons and proinflammatory cytokines

28 September 2017

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Regulation of NF-kappaB activity through lysine monomethylation of p65.

28 September 2017

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Rethinking how DNA methylation patterns are maintained

28 September 2017

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28 September 2017

Transcription dynamics

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Jmjd3 contributes to the control of gene expression in LPS-activated macrophages

28 September 2017

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Focal adhesion kinase modulates activation of NF-kappaB by flow in endothelial cells.

28 September 2017

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Induction of TLR4-target genes entails calcium/calmodulin-dependent regulation of chromatin remodeling

28 September 2017

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Pioneer factors, genetic competence, and inductive signaling: programming liver and pancreas progenitors from the endoderm

28 September 2017

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The LPS-induced transcriptional upregulation of the chicken lysozyme locus involves CTCF eviction and noncoding RNA transcription.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4693271

Repression of gene expression by unphosphorylated NF-kappaB p65 through epigenetic mechanisms.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4693271

Apigenin blocks lipopolysaccharide-induced lethality in vivo and proinflammatory cytokines expression by inactivating NF-kappaB through the suppression of p65 phosphorylation.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4693271

Helicobacter exploits integrin for type IV secretion and kinase activation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4693271

Parathyroid hormone-related protein induces cell survival in human renal cell carcinoma through the PI3K Akt pathway: evidence for a critical role for integrin-linked kinase and nuclear factor kappa B.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4693271

An inducible enhancer required for Il12b promoter activity in an insulated chromatin environment

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4693271

Transcriptional regulation via the NF-kappaB signaling module.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4693271

The proinflammatory actions of angiotensin II are dependent on p65 phosphorylation by the IkappaB kinase complex

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4693271

Promoter hypomethylation of Toll-like receptor-2 gene is associated with increased proinflammatory response toward bacterial peptidoglycan in cystic fibrosis bronchial epithelial cells.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4693271

A hyper-dynamic equilibrium between promoter-bound and nucleoplasmic dimers controls NF-kappaB-dependent gene activity

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4693271

The therapeutic potential of tumor necrosis factor for autoimmune disease: a mechanistically based hypothesis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4693271

Crystal structure of ATF-2/c-Jun and IRF-3 bound to the interferon-beta enhancer

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4693271

Regulation of distinct biological activities of the NF-kappaB transcription factor complex by acetylation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4693271

IKK beta plays an essential role in the phosphorylation of RelA/p65 on serine 536 induced by lipopolysaccharide

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4693271

Dynamic changes in histone H3 Lys 9 methylation occurring at tightly regulated inducible inflammatory genes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4693271

Integrin-linked kinase regulates inducible nitric oxide synthase and cyclooxygenase-2 expression in an NF-kappa B-dependent manner

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4693271

Two waves of nuclear factor kappaB recruitment to target promoters

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4693271

CD11b/CD18 acts in concert with CD14 and Toll-like receptor (TLR) 4 to elicit full lipopolysaccharide and taxol-inducible gene expression

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4693271

Primary response genes induced by growth factors and tumor promoters

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4693271

Steroid Receptors: Elements for Modulation of Eukaryotic Transcription

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4693271

A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4693271

Upregulation of IKKalpha/IKKbeta by integrin-linked kinase is required for HER2/neu-induced NF-kappaB antiapoptotic pathway

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4693271

NF-kappaB binds P-TEFb to stimulate transcriptional elongation by RNA polymerase II.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4693271

Chromosomal subunits in active genes have an altered conformation

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4693271

The acetyltransferase HAT1 moderates the NF-κB response by regulating the transcription factor PLZF.

31 May 2018

1 reference

https://api.crossref.org/works/10.3390%2FBIOM5043087

Coordination of a transcriptional switch by HMGI(Y) acetylation

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FBIOM5043087

Acute alcohol exposure exerts anti-inflammatory effects by inhibiting IkappaB kinase activity and p65 phosphorylation in human monocytes.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FBIOM5043087

Phosphorylation of RelA/p65 on serine 536 defines an I{kappa}B{alpha}-independent NF-{kappa}B pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FBIOM5043087

Selective and antagonistic functions of SWI/SNF and Mi-2beta nucleosome remodeling complexes during an inflammatory response

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FBIOM5043087

Modifying gene expression programs by altering core promoter chromatin architecture.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FBIOM5043087

Balance between apoptosis or survival induced by changes in extracellular-matrix composition in human mesangial cells: a key role for ILK-NFκB pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FBIOM5043087

β(2) integrins inhibit TLR responses by regulating NF-κB pathway and p38 MAPK activation

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FBIOM5043087

Heat shock protein 90 maintains the tumour-like character of rheumatoid synovial cells by stabilizing integrin-linked kinase, extracellular signal-regulated kinase and protein kinase B.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FBIOM5043087

GSK-3β-induced ASK1 stabilization is crucial in LPS-induced endotoxin shock.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FBIOM5043087

Gene-specific control of inflammation by TLR-induced chromatin modifications

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FBIOM5043087

Selective regulation of p38β protein and signaling by integrin-linked kinase mediates bladder cancer cell migration

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/26569329

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Involvement of CD14 and complement receptors CR3 and CR4 in nuclear factor-kappaB activation and TNF production induced by lipopolysaccharide and group B streptococcal cell walls

1 reference

https://pubmed.ncbi.nlm.nih.gov/26569329

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Cell-type-restricted binding of the transcription factor NFAT to a distal IL-4 enhancer in vivo

1 reference

https://pubmed.ncbi.nlm.nih.gov/26569329

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.3390/BIOM5043087

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26569329%20AND%20SRC:MED&resulttype=core&format=json

release_wpgjtmbor5hivmyw7xhfx2zx6a

7 June 2020

Fatcat ID

0 references

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26569329%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

PubMed publication ID

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26569329%20AND%20SRC:MED&resulttype=core&format=json