Evolutionary clues to eukaryotic DNA clamp-loading mechanisms: analysis of the functional constraints imposed on replication factor C AAA+ ATPases (Q24811970)

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English	Evolutionary clues to eukaryotic DNA clamp-loading mechanisms: analysis of the functional constraints imposed on replication factor C AAA+ ATPases	scientific article

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scholarly article

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Evolutionary clues to eukaryotic DNA clamp-loading mechanisms: analysis of the functional constraints imposed on replication factor C AAA+ ATPases (English)

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replication factor C subunit 1, putative

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replication factor C subunit 3, putative

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replication factor C subunit 4, putative

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replication factor C subunit 1, putative

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replication factor C subunit 3, putative

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replication factor C subunit 4, putative

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replication factor C subunit 1

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replication factor C subunit 4, putative

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replication factor C subunit 3, putative

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replication factor C subunit 3, putative

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replication factor C subunit 1, putative

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replication factor C subunit 4, putative

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replication factor C subunit 1, putative

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replication factor C subunit 4, putative

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replication factor C subunit 4, putative

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replication factor C subunit 3, putative

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replication factor C subunit 4, putative

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replication factor C subunit 1, putative

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replication factor C subunit 4, putative

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replication factor C subunit 3, putative

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replication factor C subunit 1, putative

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replication factor C subunit 3, putative

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replication factor C subunit 4, putative

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replication factor C subunit 1, putative

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replication factor C subunit 3, putative

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replication factor C subunit 1, putative

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replication factor C subunit 3, putative

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replication factor C subunit 4, putative

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replication factor C subunit 4, putative

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DNA clamp loader activity

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Gene Ontology release 2020-05-02

Gene Ontology ID

author name string

Andrew F Neuwald

1

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language of work or name

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publication date

2005

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Nucleic Acids Research

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33

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11

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3614-28

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Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model

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7 April 2017

Biochemical characterization of DNA damage checkpoint complexes: clamp loader and clamp complexes with specificity for 5' recessed DNA

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7 April 2017

The alternative Ctf18-Dcc1-Ctf8-replication factor C complex required for sister chromatid cohesion loads proliferating cell nuclear antigen onto DNA

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7 April 2017

Chl12 (Ctf18) forms a novel replication factor C-related complex and functions redundantly with Rad24 in the DNA replication checkpoint pathway

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7 April 2017

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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7 April 2017

Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold

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7 April 2017

Regulation of the transcriptional activator NtrC1: structural studies of the regulatory and AAA+ ATPase domains

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7 April 2017

Atomic structure of the clamp loader small subunit from Pyrococcus furiosus

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7 April 2017

Crystal structure of the processivity clamp loader gamma (gamma) complex of E. coli DNA polymerase III

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7 April 2017

Mechanism of processivity clamp opening by the delta subunit wrench of the clamp loader complex of E. coli DNA polymerase III

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7 April 2017

Crystal structure of the delta' subunit of the clamp-loader complex of E. coli DNA polymerase III

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7 April 2017

Crystal structure of the eukaryotic DNA polymerase processivity factor PCNA

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7 April 2017

Three-dimensional structure of the beta subunit of E. coli DNA polymerase III holoenzyme: a sliding DNA clamp

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7 April 2017

Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

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7 April 2017

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

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7 April 2017

Yeast Rad17/Mec3/Ddc1: a sliding clamp for the DNA damage checkpoint

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7 April 2017

The DNA replication fork in eukaryotic cells.

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7 April 2017

AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes

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7 April 2017

Nucleotide dependent motion and mechanism of action of p97/VCP

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7 April 2017

Structural analysis of a eukaryotic sliding DNA clamp-clamp loader complex

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7 April 2017

Complete structure of p97/valosin-containing protein reveals communication between nucleotide domains

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7 April 2017

AAA+ superfamily ATPases: common structure--diverse function

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7 April 2017

The cell-cycle regulated proliferating cell nuclear antigen is required for SV40 DNA replication in vitro

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7 April 2017

Mechanism of the sliding beta-clamp of DNA polymerase III holoenzyme

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7 April 2017

Replication factors required for SV40 DNA replication in vitro. I. DNA structure-specific recognition of a primer-template junction by eukaryotic DNA polymerases and their accessory proteins

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7 April 2017

Confirmation of the arginine-finger hypothesis for the GAP-stimulated GTP-hydrolysis reaction of Ras

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7 April 2017

RASMOL: biomolecular graphics for all

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7 April 2017

Amino acid preferences for specific locations at the ends of alpha helices

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7 April 2017

Insights into enzyme structure and dynamics elucidated by amide H/D exchange mass spectrometry.

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28 September 2017

An expanding genetic code.

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28 September 2017

Unnatural amino acid mutagenesis: a precise tool for probing protein structure and function.

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28 September 2017

Methods to study protein dynamics and folding by mass spectrometry

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28 September 2017

Dial 9-1-1 for DNA damage: the Rad9-Hus1-Rad1 (9-1-1) clamp complex

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28 September 2017

The PCNA-RFC families of DNA clamps and clamp loaders

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28 September 2017

The clamp-loading complex for processive DNA replication

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28 September 2017

TROSY in NMR studies of the structure and function of large biological macromolecules

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28 September 2017

On the Mechanism of ATP Hydrolysis in F1-ATPase

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28 September 2017

Evolutionary clues to DNA polymerase III beta clamp structural mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160110

28 September 2017

Ran's C-terminal, basic patch, and nucleotide exchange mechanisms in light of a canonical structure for Rab, Rho, Ras, and Ran GTPases

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160110

28 September 2017

Protein analysis by hydrogen exchange mass spectrometry

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28 September 2017

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28 September 2017

A unified view of the DNA-damage checkpoint

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28 September 2017

ATP utilization by yeast replication factor C. I. ATP-mediated interaction with DNA and with proliferating cell nuclear antigen

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28 September 2017

Changes in protein conformational mobility upon activation of extracellular regulated protein kinase-2 as detected by hydrogen exchange

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28 September 2017

A theory of information with special application to search problems

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28 September 2017

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28 September 2017

DNA polymerase III holoenzyme: structure and function of a chromosomal replicating machine

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28 September 2017

Helix signals in proteins

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28 September 2017

Purification of a cellular replication factor, RF-C, that is required for coordinated synthesis of leading and lagging strands during simian virus 40 DNA replication in vitro

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28 September 2017

Functions of replication factor C and proliferating-cell nuclear antigen: functional similarity of DNA polymerase accessory proteins from human cells and bacteriophage T4.

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28 September 2017

Site-specific in vivo labeling of proteins for NMR studies

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30 May 2018

DNA damage checkpoint in budding yeast.

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30 May 2018

Studies on the activator 1 protein complex, an accessory factor for proliferating cell nuclear antigen-dependent DNA polymerase delta

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160110

30 May 2018

Docking motif interactions in MAP kinases revealed by hydrogen exchange mass spectrometry

1 reference

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28 November 2018

Expanding the DNA-Recognition Repertoire for Zinc Finger Proteins beyond 20 Amino Acids

1 reference

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28 November 2018

Ordered ATP hydrolysis in the gamma complex clamp loader AAA+ machine.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1160110

28 November 2018

Unusual oligomerization required for activity of NtrC, a bacterial enhancer-binding protein.

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28 November 2018

DNA damage and replication checkpoints in the fission yeast, Schizosaccharomyces pombe

1 reference

https://pubmed.ncbi.nlm.nih.gov/16082778

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Two types of replication proteins increase the rate at which T4 DNA polymerase traverses the helical regions in a single-stranded DNA template

1 reference

https://pubmed.ncbi.nlm.nih.gov/16082778

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKI674

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release_f6rlm6caejhs7ibynwud56g2zu

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24 November 2022

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mapped directly with Wikidata item

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