Identification of new noncoding RNAs in Listeria monocytogenes and prediction of mRNA targets (Q24684824)

5

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Francis Repoila

2

object named as

Francis Repoila

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Pierre Mandin

object named as

Pierre Mandin

1

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author name string

Massimo Vergassola

3

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Thomas Geissmann

Target prediction for small, noncoding RNAs in bacteria

4

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language of work or name

English

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publication date

2007

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published in

Nucleic Acids Research

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volume

35

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issue

3

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page(s)

962-74

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cites work

1 reference

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Identification of small Hfq-binding RNAs in Listeria monocytogenes

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Translational repression is sufficient for gene silencing by bacterial small noncoding RNAs in the absence of mRNA destruction

7 April 2017

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A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action

7 April 2017

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A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes

7 April 2017

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Small RNA genes expressed from Staphylococcus aureus genomic and pathogenicity islands with specific expression among pathogenic strains

7 April 2017

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Identification of cyanobacterial non-coding RNAs by comparative genome analysis

7 April 2017

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Staphylococcus aureus RNAIII and the endoribonuclease III coordinately regulate spa gene expression

7 April 2017

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Rfam: annotating non-coding RNAs in complete genomes

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GadY, a small-RNA regulator of acid response genes in Escherichia coli

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Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species

7 April 2017

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Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli

7 April 2017

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Spot 42 RNA mediates discoordinate expression of the E. coli galactose operon

7 April 2017

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Identification of novel small RNAs using comparative genomics and microarrays

7 April 2017

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A trans-acting RNA as a control switch in Escherichia coli: DsrA modulates function by forming alternative structures

7 April 2017

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The Ribonuclease P Database

7 April 2017

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DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription

7 April 2017

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DNA uptake during bacterial transformation

7 April 2017

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Lysergic acid diethylamide- and mescaline-induced attenuation of the effect of punishment in the rat

7 April 2017

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Basic local alignment search tool

7 April 2017

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The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in Vibrio harveyi and Vibrio cholerae

7 April 2017

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Small non-coding RNAs, co-ordinators of adaptation processes in Escherichia coli: the RpoS paradigm

7 April 2017

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An RNA thermosensor controls expression of virulence genes in Listeria monocytogenes

7 April 2017

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Novel small RNA-encoding genes in the intergenic regions of Escherichia coli

7 April 2017

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6S RNA regulates E. coli RNA polymerase activity

7 April 2017

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The small RNA regulators of Escherichia coli: roles and mechanisms*

7 April 2017

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The bacterial Sm-like protein Hfq: a key player in RNA transactions

7 April 2017

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The role of RNAs in the regulation of virulence-gene expression.

7 April 2017

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Subversion of cellular functions by Listeria monocytogenes

28 September 2017

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How to find small non-coding RNAs in bacteria

28 September 2017

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SigmaB contributes to Listeria monocytogenes invasion by controlling expression of inlA and inlB.

28 September 2017

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VirR, a response regulator critical for Listeria monocytogenes virulence

28 September 2017

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Addition of poly(A) and heteropolymeric 3' ends in Bacillus subtilis wild-type and polynucleotide phosphorylase-deficient strains

28 September 2017

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An abundance of RNA regulators

28 September 2017

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Construction and characterization of Listeria monocytogenes mutants with in-frame deletions in the response regulator genes identified in the genome sequence

28 September 2017

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Bacterial small RNA regulators

28 September 2017

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New vector for efficient allelic replacement in naturally nontransformable, low-GC-content, gram-positive bacteria.

28 September 2017

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Molecular determinants of Listeria monocytogenes virulence

28 September 2017

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6S RNA function enhances long-term cell survival

28 September 2017

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The RNA-binding protein Hfq of Listeria monocytogenes: role in stress tolerance and virulence

28 September 2017

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Controlling mRNA stability and translation with small, noncoding RNAs

28 September 2017

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RNA-mediated control of virulence gene expression in bacterial pathogens

28 September 2017

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A salvage pathway for protein structures: tmRNA and trans-translation

28 September 2017

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Controlling competence in Bacillus subtilis: shared use of regulators

28 September 2017

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Small RNAs in bacteria: diverse regulators of gene expression in response to environmental changes

28 September 2017

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Listeria pathogenesis and molecular virulence determinants

28 September 2017

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Identification in Listeria monocytogenes of MecA, a homologue of the Bacillus subtilis competence regulatory protein

28 September 2017

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A pair of mobilizable shuttle vectors conferring resistance to spectinomycin for molecular cloning in Escherichia coli and in gram-positive bacteria

28 September 2017

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A single regulatory gene integrates control of vitamin B12 synthesis and propanediol degradation

28 September 2017

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Prediction of rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures.

28 September 2017

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Selective inhibition of cyclooxygenase-2 expression by 15-deoxy-Delta(12,14)(12,14)-prostaglandin J(2) in activated human astrocytes, but not in human brain macrophages

30 May 2018

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Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKL1096

The repetitive DNA elements called CRISPRs and their associated genes: evidence of horizontal transfer among prokaryotes.

21 January 2018

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Crossref

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fhlA repression by OxyS RNA: kissing complex formation at two sites results in a stable antisense-target RNA complex

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17259222

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Antisense RNAs everywhere?

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17259222

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKL1096

1 reference

release_pdkhl7w2dza4dn4gdej7w7qpii

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/pdkhl7w2dza4dn4gdej7w7qpii

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

1 reference

PubMed publication ID

17259222

1 reference