Editor meets silencer: crosstalk between RNA editing and RNA interference (Q24632981)

Nature Reviews Molecular Cell Biology

Europe PubMed Central

title

Editor meets silencer: crosstalk between RNA editing and RNA interference (English)

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Kazuko Nishikura

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language of work or name

English

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publication date

December 2006

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published in

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volume

7

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issue

12

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page(s)

919-31

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cites work

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RNA editing of a miRNA precursor

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Editing of glutamate receptor B subunit ion channel RNAs by four alternatively spliced DRADA2 double-stranded RNA adenosine deaminases

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Size selective recognition of siRNA by an RNA silencing suppressor

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Recognition of small interfering RNA by a viral suppressor of RNA silencing

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MicroRNAs: genomics, biogenesis, mechanism, and function

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Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans

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A germline-specific class of small RNAs binds mammalian Piwi proteins

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Regulating gene expression through RNA nuclear retention

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RNAi-mediated pathways in the nucleus

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Mechanisms of gene silencing by double-stranded RNA

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Glutamate receptors: RNA editing and death of motor neurons

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Nervous system targets of RNA editing identified by comparative genomics

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Requirement of dimerization for RNA editing activity of adenosine deaminases acting on RNA

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Altered editing of serotonin 2C receptor pre-mRNA in the prefrontal cortex of depressed suicide victims

7 April 2017

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RNAi is antagonized by A-->I hyper-editing

7 April 2017

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The fate of dsRNA in the nucleus: a p54(nrb)-containing complex mediates the nuclear retention of promiscuously A-to-I edited RNAs

7 April 2017

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Specific cleavage of hyper-edited dsRNAs

7 April 2017

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RNA editing of the human serotonin 5-HT2C receptor. alterations in suicide and implications for serotonergic pharmacotherapy

7 April 2017

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Requirement of the RNA editing deaminase ADAR1 gene for embryonic erythropoiesis

7 April 2017

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Altered G protein-coupling functions of RNA editing isoform and splicing variant serotonin2C receptors

7 April 2017

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Regulation of serotonin-2C receptor G-protein coupling by RNA editing

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A mammalian RNA editing enzyme

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RNA editing of AMPA receptor subunit GluR-B: a base-paired intron-exon structure determines position and efficiency

7 April 2017

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A double-stranded RNA unwinding activity introduces structural alterations by means of adenosine to inosine conversions in mammalian cells and Xenopus eggs

7 April 2017

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Structure and specific RNA binding of ADAR2 double-stranded RNA binding motifs

7 April 2017

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Stress-induced Apoptosis Associated with Null Mutation of ADAR1 RNA Editing Deaminase Gene

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Modulation of RNA editing by functional nucleolar sequestration of ADAR2

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Dynamic association of RNA-editing enzymes with the nucleolus

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Regulation of alternative splicing by RNA editing

7 April 2017

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Characterization of the piRNA Complex from Rat Testes

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Antisense transcription in the mammalian transcriptome

7 April 2017

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MicroRNA biogenesis: coordinated cropping and dicing

7 April 2017

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Chromatin modifications by methylation and ubiquitination: implications in the regulation of gene expression

7 April 2017

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Identification of microRNAs of the herpesvirus family

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Systematic identification of abundant A-to-I editing sites in the human transcriptome

7 April 2017

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Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2

7 April 2017

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A-to-I RNA editing and human disease

7 April 2017

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Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes

27 September 2017

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An overview of cytidine deaminases

27 September 2017

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Extensive adenosine-to-inosine editing detected in Alu repeats of antisense RNAs reveals scarcity of sense-antisense duplex formation

27 September 2017

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microPrimer: the biogenesis and function of microRNA.

27 September 2017

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Identification and characterization of small RNAs involved in RNA silencing

27 September 2017

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ADAR gene family and A-to-I RNA editing: diverse roles in posttranscriptional gene regulation

27 September 2017

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RNA interference and heterochromatin in the fission yeast Schizosaccharomyces pombe

27 September 2017

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Rules of engagement: co-transcriptional recruitment of pre-mRNA processing factors

27 September 2017

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A bioinformatic screen for novel A-I RNA editing sites reveals recoding editing in BC10.

27 September 2017

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Regulation of serotonin 2C receptor pre-mRNA editing by serotonin

27 September 2017

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Vigilins bind to promiscuously A-to-I-edited RNAs and are involved in the formation of heterochromatin.

27 September 2017

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A survey of RNA editing in human brain

27 September 2017

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Widespread RNA editing of embedded alu elements in the human transcriptome

27 September 2017

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Minimal conditions for exonization of intronic sequences: 5' splice site formation in alu exons

27 September 2017

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A conserved siRNA-degrading RNase negatively regulates RNA interference in C. elegans.

27 September 2017

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AluGene: a database of Alu elements incorporated within protein-coding genes

27 September 2017

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Mutations of the RNA-specific adenosine deaminase gene (DSRAD) are involved in dyschromatosis symmetrica hereditaria

27 September 2017

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Regulation of ion channel/neurotransmitter receptor function by RNA editing

27 September 2017

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The dsRNA binding protein family: critical roles, diverse cellular functions

27 September 2017

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Editing site recognition and nucleotide insertion are separable processes in Physarum mitochondria

27 September 2017

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RNA editing by ADARs is important for normal behavior in Caenorhabditis elegans

27 September 2017

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tadA, an essential tRNA-specific adenosine deaminase from Escherichia coli

27 September 2017

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CRM1 mediates the export of ADAR1 through a nuclear export signal within the Z-DNA binding domain

27 September 2017

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RNA silencing in plants--defense and counterdefense

27 September 2017

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RNA editing by base deamination: more enzymes, more targets, new mysteries

27 September 2017

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The RNA world meets behavior: A-->I pre-mRNA editing in animals

27 September 2017

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Functions and mechanisms of RNA editing

27 September 2017

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Double-stranded RNA as a template for gene silencing

27 September 2017

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Inosine exists in mRNA at tissue-specific levels and is most abundant in brain mRNA

27 September 2017

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The cytoplasm of Xenopus oocytes contains a factor that protects double-stranded RNA from adenosine-to-inosine modification

27 September 2017

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Substrate specificity of the dsRNA unwinding/modifying activity

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953463

RNA editing of hepatitis delta virus antigenome by dsRNA-adenosine deaminase

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953463

RNA editing of human microRNAs

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953463

High doses of siRNAs induce eri-1 and adar-1 gene expression and reduce the efficiency of RNA interference in the mouse

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953463

Mutations in RNAi rescue aberrant chemotaxis of ADAR mutants

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953463

Human RNA-specific adenosine deaminase (ADAR1) gene specifies transcripts that initiate from a constitutively active alternative promoter

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953463

A-to-I pre-mRNA editing in Drosophila is primarily involved in adult nervous system function and integrity

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953463

Molecular basis of double-stranded RNA-protein interactions: structure of a dsRNA-binding domain complexed with dsRNA.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953463

Mutagenic analysis of double-stranded RNA adenosine deaminase, a candidate enzyme for RNA editing of glutamate-gated ion channel transcripts

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953463

Antisense RNA injections in fertilized frog eggs reveal an RNA duplex unwinding activity.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953463

ADAR2-dependent RNA editing of AMPA receptor subunit GluR2 determines vulnerability of neurons in forebrain ischemia

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953463

The RISC subunit Tudor-SN binds to hyper-edited double-stranded RNA and promotes its cleavage

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953463

Is abundant A-to-I RNA editing primate-specific?

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953463

Editing the message from A to I.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953463

AMPA receptor tetramerization is mediated by Q/R editing

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953463

Widespread inosine-containing mRNA in lymphocytes regulated by ADAR1 in response to inflammation.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953463

The role of RNA editing by ADARs in RNAi

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953463

The mle(napts) RNA helicase mutation in drosophila results in a splicing catastrophe of the para Na+ channel transcript in a region of RNA editing.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953463

RED2, a brain-specific member of the RNA-specific adenosine deaminase family

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953463

A developmentally regulated activity that unwinds RNA duplexes

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2953463

An unwinding activity that covalently modifies its double-stranded RNA substrate

28 November 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRM2061

The importance of internal loops within RNA substrates of ADAR1

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM2061

Genome-wide analysis of coordinate expression and evolution of human cis-encoded sense-antisense transcripts

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM2061

Is there any sense in antisense editing?

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM2061

Transposon silencing in the Caenorhabditis elegans germ line by natural RNAi

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM2061

Polycistronic transcription and editing of the mitochondrial small subunit (SSU ) ribosomal RNA in Dictyostelium discoideum

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRM2061

Methods for analysis of mitochondrial tRNA editing in Acanthamoeba castellanii

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17139332

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NRM2061

1 reference

Dimensions Publication ID

1052425587

0 references

1 reference

1 reference

PubMed publication ID

17139332

1 reference