DOMINE: a comprehensive collection of known and predicted domain-domain interactions (Q24610433)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21113022

protein interaction domains and motifs

4 September 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21113022

4 September 2024

3

Dmitri V. Zaykin

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21113022

4 September 2024

author name string

Sailu Yellaboina

1

0 references

Asba Tasneem

2

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Balaji Raghavachari

4

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Raja Jothi

5

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language of work or name

English

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publication date

January 2011

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27 November 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21113022

full work available at URL

4 September 2024

https://academic.oup.com/nar/article-pdf/39/suppl_1/D730/18786973/gkq1229.pdf

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21113022

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/21113022/pdf/?tool=EBI

4 September 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21113022

http://nar.oxfordjournals.org/cgi/content/full/39/suppl_1/D730

4 September 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21113022

http://nar.oxfordjournals.org/cgi/reprint/39/suppl_1/D730.pdf

4 September 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21113022

http://nar.oxfordjournals.org/cgi/content/abstract/39/suppl_1/D730

4 September 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21113022

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/21113022/?tool=EBI

4 September 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21113022

https://europepmc.org/articles/PMC3013741

4 September 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21113022

https://europepmc.org/articles/PMC3013741?pdf=render

4 September 2024

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21113022

http://academic.oup.com/nar/article-pdf/39/suppl_1/D730/18786973/gkq1229.pdf

4 September 2024

https://api.crossref.org/works/10.1093/NAR/GKQ1229

1 reference

Creative Commons Attribution-NonCommercial 2.5 Generic

4 September 2024

published in

Nucleic Acids Research

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volume

39

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issue

Database issue

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page(s)

D730-5

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copyright license

start time

14 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Inferring protein domain interactions from databases of interacting proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013741

Assembly of Cell Regulatory Systems Through Protein Interaction Domains

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013741

Domain combinations in archaeal, eubacterial and eukaryotic proteomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013741

Knowledge-guided inference of domain-domain interactions from incomplete protein-protein interaction networks

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013741

Interrogating domain-domain interactions with parsimony based approaches

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013741

DOMINE: a database of protein domain interactions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013741

InSite: a computational method for identifying protein-protein interaction binding sites on a proteome-wide scale

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013741

Reuse of structural domain-domain interactions in protein networks

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013741

A domain-based approach to predict protein-protein interactions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013741

Predicting protein domain interactions from coevolution of conserved regions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013741

Predicting domain-domain interactions using a parsimony approach

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013741

Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain interactions mediating protein-protein interactions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013741

An integrated approach to the prediction of domain-domain interactions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013741

Finding biologically relevant protein domain interactions: conserved binding mode analysis

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013741

iPfam: visualization of protein-protein interactions in PDB at domain and amino acid resolutions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013741

Inferring domain-domain interactions from protein-protein interactions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013741

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013741

A discriminative approach for identifying domain-domain interactions from protein-protein interactions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013741

3did Update: domain-domain and peptide-mediated interactions of known 3D structure

30 May 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1229

Integrative approach for computationally inferring protein domain interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1229

Statistical analysis of domains in interacting protein pairs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1229

Prediction of protein-protein interactions using random decision forest framework

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1229

A domain interaction map based on phylogenetic profiling

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21113022

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKQ1229

1 reference

journals/nar/YellaboinaTZRJ11

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

1 reference

1 reference