Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery (Q24599569)

1

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Evan E. Eichler

7

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Can Alkan

Can Alkan

6

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Iman Hajirasouliha

2

Iman Hajirasouliha

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S. Cenk Sahinalp

8

S Cenk Sahinalp

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Deniz Yorukoglu

5

Deniz Yorukoglu

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author name string

Phuong Dao

3

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Faraz Hach

Death and resurrection of the human IRGM gene

4

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language of work or name

English

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publication date

15 June 2010

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1 reference

26

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issue

12

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page(s)

i350-7

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881400

Accurate whole human genome sequencing using reversible terminator chemistry

24 March 2017

1 reference

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Mapping and sequencing of structural variation from eight human genomes

24 March 2017

1 reference

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Evaluation of paired-end sequencing strategies for detection of genome rearrangements in cancer

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881400

Paired-end mapping reveals extensive structural variation in the human genome

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881400

The diploid genome sequence of an individual human

24 March 2017

1 reference

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End-sequence profiling: sequence-based analysis of aberrant genomes

24 March 2017

1 reference

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Structural variation in the human genome

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881400

Fine-scale structural variation of the human genome

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881400

PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881400

Base-calling of automated sequencer traces using phred. II. Error probabilities

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881400

Repbase Update, a database of eukaryotic repetitive elements

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881400

Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881400

Computational methods for discovering structural variation with next-generation sequencing

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881400

Personalized copy number and segmental duplication maps using next-generation sequencing.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881400

BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881400

Exon-trapping mediated by the human retrotransposon SVA.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881400

Integrating sequencing technologies in personal genomics: optimal low cost reconstruction of structural variants

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881400

A geometric approach for classification and comparison of structural variants

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881400

Mobile elements create structural variation: analysis of a complete human genome.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881400

Deletion polymorphism upstream of IRGM associated with altered IRGM expression and Crohn's disease

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881400

A robust framework for detecting structural variations in a genome

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881400

Psoriasis is associated with increased beta-defensin genomic copy number

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881400

Which transposable elements are active in the human genome?

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881400

An Alu Transposition Model for the Origin and Expansion of Human Segmental Duplications

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881400

Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881400

MoDIL: detecting small indels from clone-end sequencing with mixtures of distributions

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2881400

10.1093/BIOINFORMATICS/BTQ216

28 November 2018

Identifiers

DOI

1 reference

journals/bioinformatics/HormozdiariHDHYAES10

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

1 reference

PubMed publication ID

20529927

1 reference