Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum (Q22065465)

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language of work or name

English

0 references

publication date

15 August 2001

0 references

published in

Journal of Bacteriology

0 references

volume

183

0 references

issue

16

0 references

page(s)

4823-4838

0 references

cites work

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Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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Acetone-butanol fermentation revisited

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The complete genome sequence of the gram-positive bacterium Bacillus subtilis

19 March 2017

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Structure of the lnlB leucine-rich repeats, a domain that triggers host cell invasion by the bacterial pathogen L. monocytogenes

19 March 2017

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Base-calling of automated sequencer traces using phred. I. Accuracy assessment

19 March 2017

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Whole-genome random sequencing and assembly of Haemophilus influenzae Rd

19 March 2017

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The COG database: a tool for genome-scale analysis of protein functions and evolution

19 March 2017

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19 March 2017

DNA uptake in bacteria

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The cellulosome concept as an efficient microbial strategy for the degradation of insoluble polysaccharides

19 March 2017

1 reference

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The Minimal Gene Complement of Mycoplasma genitalium

19 March 2017

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Using CLUSTAL for multiple sequence alignments

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Iterated profile searches with PSI-BLAST--a tool for discovery in protein databases

7 April 2017

1 reference

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Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Asymmetric substitution patterns in the two DNA strands of bacteria

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Isolation and Characterization of Mutants of Clostridium acetobutylicum ATCC 824 Deficient in Acetoacetyl-Coenzyme A:Acetate/Butyrate:Coenzyme A-Transferase (EC 2.8.3.9) and in Other Solvent Pathway Enzymes

7 April 2017

1 reference

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Purification and Characterization of Two Endoxylanases from Clostridium acetobutylicum ATCC 824

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

A large gene cluster for the Clostridium cellulovorans cellulosome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

From complete genomes to measures of substitution rate variability within and between proteins

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Comparative genome analysis of the pathogenic spirochetes Borrelia burgdorferi and Treponema pallidum

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction

12 September 2017

1 reference

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Identification of three oligosaccharide binding sites in ricin

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Evolution of aminoacyl-tRNA synthetases--analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Identification of a gene in Staphylococcus xylosus encoding a novel glucose uptake protein

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Variation and evolution of the citric-acid cycle: a genomic perspective.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Eukaryotic signalling domain homologues in archaea and bacteria. Ancient ancestry and horizontal gene transfer

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Structure of the cell-adhesion fragment of intimin from enteropathogenic Escherichia coli.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Cellulosomes-structure and ultrastructure.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Regulation of the sol locus genes for butanol and acetone formation in Clostridium acetobutylicum ATCC 824 by a putative transcriptional repressor

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Novel families of putative protein kinases in bacteria and archaea: evolution of the "eukaryotic" protein kinase superfamily

12 September 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

12 September 2017

https://api.crossref.org/works/10.1128%2FJB.183.16.4823-4838.2001

7 January 2021

inferred from DOI database lookup

Cloning and DNA sequencing of the genes encoding Clostridium josui scaffolding protein CipA and cellulase CelD and identification of their gene products as major components of the cellulosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Physical and genetic map of the Clostridium acetobutylicum ATCC 824 chromosome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

SEALS: a system for easy analysis of lots of sequences.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

The genes for butanol and acetone formation in Clostridium acetobutylicum ATCC 824 reside on a large plasmid whose loss leads to degeneration of the strain

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Regulation of carbon and electron flow in Clostridium acetobutylicum grown in chemostat culture at neutral pH on mixtures of glucose and glycerol

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Regulation of Clostridium acetobutylicum metabolism as revealed by mixed-substrate steady-state continuous cultures: role of NADH/NAD ratio and ATP pool

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Non-globular domains in protein sequences: automated segmentation using complexity measures

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

The sigma factors of Bacillus subtilis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

The anchorage function of CipA (CelL), a scaffolding protein of the Clostridium thermocellum cellulosome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Terminal-sequence analysis of bacterial ribosomal RNA. Correlation between the 3'-terminal-polypyrimidine sequence of 16-S RNA and translational specificity of the ribosome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Study of the NADH and NADPH-ferredoxin oxidoreductase activities in Clostridium acetobutylicum

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

A COMPARATIVE STUDY OF SIX DIFFERENT STRAINS OF THE ORGANISM COMMONLY CONCERNED IN LARGE-SCALE PRODUCTION OF BUTYL ALCOHOL AND ACETONE BY THE BIOLOGICAL PROCESS.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Stress- and Growth Phase-Associated Proteins of Clostridium acetobutylicum.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Xylanolytic Activity of Clostridium acetobutylicum.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Molecular biology and genetics of substrate utilization in clostridia.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

The genetic engineering of microbial solvent production

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Expression of heat shock genes inClostridium acetobutylicum

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Solventogenic enzymes ofClostridium acetobutylicum: catalytic properties, genetic organization, and transcriptional regulation

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Catabolite repression and inducer control in Gram-positive bacteria

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Molecular genetics of sporulation in Bacillus subtilis.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Novel phosphotransferase system genes revealed by genome analysis - the complete complement of PTS proteins encoded within the genome of Bacillus subtilis

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Physiology of carbohydrate to solvent conversion by clostridia

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Taxonomy and Phylogeny of Industrial Solvent-Producing Clostridia

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Initiation of sporulation in B. subtilis is controlled by a multicomponent phosphorelay

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Spo0A directly controls the switch from acid to solvent production in solvent-forming clostridia

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Phylogenetic basis for a taxonomic dissection of the genus Clostridium

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Genetic manipulation of acid formation pathways by gene inactivation in Clostridium acetobutylicum ATCC 824.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=99537

Characterization of recombinant strains of the Clostridium acetobutylicum butyrate kinase inactivation mutant: need for new phenomenological models for solventogenesis and butanol inhibition?

29 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/11466286

12 December 2020

Multiple histidine kinases regulate entry into stationary phase and sporulation in Bacillus subtilis

1 reference

https://pubmed.ncbi.nlm.nih.gov/11466286

12 December 2020

Expression of cloned homologous fermentative genes in Clostridium acetobutylicum ATCC 824

1 reference

https://pubmed.ncbi.nlm.nih.gov/11466286

12 December 2020

Genetic and metabolic engineering of Clostridium acetobutylicum ATCC 824

1 reference

https://pubmed.ncbi.nlm.nih.gov/11466286

12 December 2020

Analysis of Tn916-induced mutants of Clostridium acetobutylicum altered in solventogenesis and sporulation

1 reference

https://pubmed.ncbi.nlm.nih.gov/11466286

12 December 2020

Production of acetone butanol ethanol (ABE) by a hyper-producing mutant strain of Clostridium beijerinckii BA101 and recovery by pervaporation

1 reference

https://pubmed.ncbi.nlm.nih.gov/11466286

12 December 2020

Solvent-forming genes in clostridia

1 reference

Crossref