A probabilistic model of RNA conformational space (Q21145357)

17 August 2022

Thomas Hamelryck

6

Thomas

Hamelryck

1 reference

17 August 2022

Ida Moltke

2

Ida

Moltke

1 reference

17 August 2022

4

Kanti V Mardia

Kanti V.

Mardia

1 reference

1023966567

17 August 2022

Jesper Ferkinghoff-Borg

series ordinal

5

object named as

Jesper Ferkinghoff-Borg

author given names

Jesper

author last names

Ferkinghoff-Borg

1 reference

17 August 2022

Martin Thiim

3

Martin

Thiim

1 reference

1023966567

full work available at URL

17 August 2022

language of work or name

English

0 references

publication date

June 2009

0 references

http://eprints.whiterose.ac.uk/10094/

content deliverer

White Rose Research Online

object of statement has role

postprint

0 references

published in

PLOS Computational Biology

0 references

volume

5

0 references

issue

6

0 references

page(s)

e1000406

0 references

copyright license

Creative Commons Attribution 4.0 International

start time

19 June 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

A generative, probabilistic model of local protein structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691987

RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution)

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691987

Automated de novo prediction of native-like RNA tertiary structures

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691987

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691987

Sampling realistic protein conformations using local structural bias

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691987

A statistical sampling algorithm for RNA secondary structure prediction

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691987

Geometric nomenclature and classification of RNA base pairs

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691987

Non–coding RNA genes and the modern RNA world

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691987

A general method applicable to the search for similarities in the amino acid sequence of two proteins

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691987

The Eukaryotic Genome as an RNA Machine

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691987

The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691987

Practical conversion from torsion space to Cartesian space for in silico protein synthesis

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691987

Early evolution of histone mRNA 3' end processing

19 March 2017

1 reference

Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691987

The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691987

RNA dynamics: it is about time.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691987

Bridging the gap in RNA structure prediction.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691987

Statistical analysis of RNA backbone

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691987

Revolutions in RNA secondary structure prediction

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691987

Significance of conformational biases in Monte Carlo simulations of protein folding: lessons from Metropolis-Hastings approach.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691987

RNA conformational classes

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691987

RNA backbone is rotameric

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2691987

On Information and Sufficiency

12 September 2017

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000406

Monte Carlo sampling methods using Markov chains and their applications

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000406

HMM sampling and applications to gene finding and alternative splicing

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19543381

12 December 2020

inferred from PubMed ID database lookup

A complete conformational map for RNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19543381

12 December 2020

inferred from PubMed ID database lookup

Monte Carlo simulation and global optimization without parameters

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19543381

12 December 2020

inferred from PubMed ID database lookup

Assessing a mixture model for clustering with the integrated completed likelihood

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000406

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1371/JOURNAL.PCBI.1000406

1 reference

10.1371/JOURNAL.PCBI.1000406

Altmetric DOI

0 references

CORE ID

87506096

0 references

DBLP publication ID

journals/ploscb/FrellsenMTMFH09

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1023966567

0 references

1 reference

1 reference

PubMed publication ID

19543381

1 reference